Rw7G024430

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000280
Physical Location & Seq
Forward (+)
30057610 .. 30067459
9850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024430.1

Sequence Viewer

Length: 2934 bp
ATGGCGAGAGGGGGAGGCAGAGGAAGAGGGAGATGGGCAAAGCGGCAAACCCATAACCCAAATCAAACTGAAGATGTTGCTGTCAAAGTTGGTGAAGATGGTGATGGGGTTGTTCTTTCTGAGATAAAGGCTGAAGAAGTTGCTGTGAGTGTGAAGAAGAAGAAGAAGCCTGGGAGGAAGAGTAAGAAGGTTTTGGTGGGAAATGGTGATGGAGGTCTAAAGGAGGTTGCTTTTGGTGGTGATGAGATTTCTATGATGACTTTGAGGAAGAGGCCTGAACGGAAGAAGAGAGTTAGAGTTATGGAGGCAGAGGGAAATGGTGAGAAAGGTAAAGAGAATGGTGCTTCTGTGAACAAGAAGGGTAGGAAAAAGGTGACATTTGCTAAGGAAGGGGGAAAGAAAGGTGTTTTAGAAGTGGATAATGACAAGAAGCGCGATAGGAAGCGTGCGAAAACTGAGGAGGAAGATGGGAATGAGGTAGGCTATTCGTTTAGGCCTCTGAGGGAGCAGGGACATCTATCAACGGAGGAGCGTAAAAAGTGGATTGAGGAGGTATCCCTAATGTGCCACCAATGTCAGAGGAATGATAAGGGAAGGGTTGTTCGGTGCAAAAAGTGCAGGACAAAGCGATATTGTGTTCCTTGCATAGAGAATTGGTATCCACATACATCAGAGGATGCCATTGCTGAGGCTTGTCCTGTATGCCGTGGAAATTGCAATTGCAAAGCATGCTTGCGCTTGGATATACCAGTTAAAGTCAATTTAGTACTTGACAACGATGCAAGAGTTGAGCACTCTAAGTATTTAATTCATGCACTGCTTCCATCCTTGAAAAGAATTCATGAAGAACAAGAGAATGAGATGGCGATGGAGGCAAGGAGAAAAGGATTATCTAACTTGAAGCTCCAGATACCAAAGTCTGACTGTGCTGCTGATGTTCGCGTGTATTGCAACAACTGCAGAACTTCTATTTTTGATTATCACAGAAGCTGTCCTAAATGTTCATATGACCTCTGCCTCATTTGTTGCCGGGAGATTCGTGAAGGACAATTGCAGCTAGGTAGGGAGGAAGTGACTTTGGAGTGTGTTTCTCGGGGCTTACCTTATTTGCATGGTGGAGAGGAAGAGGACAACAAAAAAAGAAAGGGAAAGAGAAATAGGAATGTTGTGGAGCCACCCTCTGAAACTAGTCCCAAAAGTTCTGGAAAGCGAACATTTGAGTGGAAATCATATGAAGATGGAAGCATAATTTGCCCCCCAGAGGACATGGGAGGTTGTGGCAGTGGTAATCTAGAATTGAGATGCATGTTTTCCAAAAATTACGTCAAAGAGTTGGTAAAGAAAGCAGAAGAGATAGATGAAGCTTACAAACTTGTGTATTCAAGTAGAACTTCTGCAGAGAGGTGTTCATGTCTCAACTCTGTCGATGATGTCAATTCAAGCATCAATGCATCAAGGAAAGCAGCTTCACGAGACAATTCTGAGGACAACTATCTGTACTGTGCAAGGGCTGGAGATATCCAAGTAGAGGATTTAAAGCATTTCCAGTGGCATTGGATCAAGGGTGAGCCTGTTATTGTTAGCAATGCACTTGAAACTGCATCAGGTTTAAGCTGGGAACCATTGGTCATGTGGCGCGCTTGTCGTCAGATGCAACATACTAAGCATGGTAAACATTTGGACGTCAAAGCAATAGATTGCCTGGATTGGTGTGAGGGGGATATCAATATCCACCAATTTTTTACTGGATACTCGAAGGGACGGTTTGATCGAGAGAATTGGCCACAGATATTGAAACTGAAAGATTGGCCGCCAACTAATTTATTTGAGGAGCGCCTTCCTCGTCATGGTGCTGAGTTCATTTGTTGTCTGCCGTATAAGGAATATACTCATCCTCGCAATGAATGTGTAAAACCAGACATGGGACCAAAGACATATATTGCTTATGGTTTTTCCCAGGAGCTTGGACGTGGAGATTCTGTAACCAAGCTTCATTGCGATATGTCGGATGCGGTGAATGTTTTGACACATACCACTGAAGTGAACCTTACTCCTGAGCAACTTACTGTCATTGAAAAGTTGAAAAAGAAGCATGCTCAACAAGACCAAAGAGAAATTTTTGGCAATTGTCAGACTGTGGATGATGATGTTGATAGTAGCAAGGCTGCTGGTGATTCTTGTTTCAGTGCTGCTAATGATAAACAACTTCCTAATGAAGTTGATAATAATAGCAGTGGTGTAGCTGTTCCAGAACTGGTTGATCCAATTGTTCAACATGTTGGAGATGCTTCAACGGGATCTGTGTCCGAAAAGAATAAAGAGGCAGAATTAGATCATGACATCGGTGGTGAAATGCCTGCAAGGATTTATGGAAATAAGTTGGAAGAGTCGGATGTCAATGAGGGAGGTGCTTTATGGGACATATTCCGTAGACAGGATGTTCCTAAGCTGCAGGAGTATCTCATGAAGCATTTCAAGGAATTCAGGCACATACACTGTTGTCCATTGCAGCAGGTTATTCATCCCATACATGATCAGACATTTTATCTTACAATGGAGCACAAAAAGAAGCTTAAAGAGGAATATGTGGACGTATTCCTATGGAAGTATTTAACTTGCATATATGCTTCTGTACGTGTTATGTTACACTTCTTAATTAGATCCTTTTTCATTTTCCAGTCATGCATCAAAGTTGCAATGGACTTTGTCTCACCTGAAAATGTCGGCGAGTGCTTTCACTTGACAGAAGTATTCCGCACACTTCCAGAAGATCACAGGGCTAAAGAGGACAAATTGGAGGTAAAGAAAATGATTATTCATTCTGTCACTGATGCTCTGGAGGAACTAAATCAGAATGTGAGGTCTAAGGAAACCACTAATCCACCTCAATCAAGTCAGAGCGATGGAGATTATATGGTTCAGGATACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

977

Amino Acids

111.26

Weight (kDa)

7.45

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 186 - 246 3.2e-07 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1686
Acc36I ACCTGC 1 cut(s) 2503
AccI GTMKAC 1 cut(s) 2431
AccII CGCG 3 cut(s) 435, 942, 1638
AciI CCGC 4 cut(s) 43, 1811, 2012, 2755
AclWI GGATC 4 cut(s) 1565, 2255, 2305, 2655
AcoI YGGCCR 2 cut(s) 1781, 1808
AcsI RAATTY 3 cut(s) 837, 2115, 2480
AcuI CTGAAG 3 cut(s) 90, 153, 2058
AcyI GRCGYC 1 cut(s) 1683
AfaI GTAC 3 cut(s) 768, 1499, 2634
AfiI CCNNNNNNNGG 5 cut(s) 1261, 1528, 1847, 1922, 2434
AflIII ACRYGT 2 cut(s) 2275, 2635
AhlI ACTAGT 1 cut(s) 1187
AjiI CACGTC 1 cut(s) 1970
AjnI CCWGG 3 cut(s) 169, 1701, 1956
AleI CACNNNNGTG 1 cut(s) 2039
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
Alw21I GWGCWC 2 cut(s) 795, 2562
Alw26I GTCTC 3 cut(s) 1418, 1467, 2713
AlwI GGATC 4 cut(s) 1565, 2255, 2305, 2655
AlwNI CAGNNNCTG 1 cut(s) 990
Ama87I CYCGRG 1 cut(s) 1092
AoxI GGCC 4 cut(s) 272, 494, 1781, 1808
ApeKI GCWGC 7 cut(s) 929, 1054, 1463, 2165, 2189, 2449, 2509
ApoI RAATTY 3 cut(s) 837, 2115, 2480
ArsI GACNNNNNNTTYG 2 cut(s) 1308, 1340
Asp700I GAANNNNTTC 1 cut(s) 2471
AspLEI GCGC 5 cut(s) 435, 738, 1638, 1640, 1836
AspS9I GGNCC 1 cut(s) 1925
AsuC2I CCSGG 1 cut(s) 1031
AvaI CYCGRG 1 cut(s) 1092
AvaII GGWCC 1 cut(s) 1925
BaeI ACNNNNGTAYC 2 cut(s) 902, 935
BalI TGGCCA 1 cut(s) 1783
BarI GAAGNNNNNNTAC 2 cut(s) 1974, 2006
BauI CACGAG 1 cut(s) 1470
Bbv12I GWGCWC 2 cut(s) 795, 2562
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 7 cut(s) 916, 1066, 1475, 2152, 2176, 2436, 2521
BceAI ACGGC 2 cut(s) 690, 1858
BciT130I CCWGG 3 cut(s) 171, 1703, 1958
BciVI GTATCC 4 cut(s) 565, 669, 1742, 2917
BclI TGATCA 1 cut(s) 2533
BcnI CCSGG 1 cut(s) 1031
BcoDI GTCTC 3 cut(s) 1418, 1467, 2713
BcuI ACTAGT 1 cut(s) 1187
BfaI CTAG 3 cut(s) 1058, 1188, 1292
BfmI CTRYAG 3 cut(s) 958, 1395, 2450
BfoI RGCGCY 1 cut(s) 1837
BfuAI ACCTGC 1 cut(s) 2503
BfuI GTATCC 4 cut(s) 565, 669, 1742, 2917
BisI GCNGC 9 cut(s) 44, 930, 1055, 1464, 1811, 2166, 2190, 2450, 2510
BlsI GCNGC 9 cut(s) 45, 931, 1056, 1465, 1812, 2167, 2191, 2451, 2511
BmcAI AGTACT 1 cut(s) 768
Bme1390I CCNGG 4 cut(s) 171, 1031, 1703, 1958
Bme18I GGWCC 1 cut(s) 1925
BmeT110I CYCGRG 1 cut(s) 1092
BmgBI CACGTC 1 cut(s) 1970
BmgT120I GGNCC 1 cut(s) 1925
BmiI GGNNCC 3 cut(s) 1173, 1620, 1926
BmrFI CCNGG 4 cut(s) 171, 1031, 1703, 1958
BplI GAGNNNNNCTC 2 cut(s) 1163, 1195
BpmI CTGGAG 3 cut(s) 890, 1533, 2858
Bpu10I CCTNAGC 4 cut(s) 384, 687, 2055, 2445
BpuMI CCSGG 1 cut(s) 1031
BsaAI YACGTR 1 cut(s) 2636
BsaHI GRCGYC 1 cut(s) 1683
BsaJI CCNNGG 3 cut(s) 170, 706, 1956
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 1965, 1995
Bsc4I CCNNNNNNNGG 5 cut(s) 1261, 1528, 1847, 1922, 2434
Bse1I ACTGG 5 cut(s) 749, 1546, 1750, 2259, 2677
Bse3DI GCAATG 6 cut(s) 681, 1591, 1906, 1993, 2504, 2703
BseBI CCWGG 3 cut(s) 171, 1703, 1958
BseDI CCNNGG 3 cut(s) 170, 706, 1956
BseGI GGATG 8 cut(s) 682, 824, 1891, 2014, 2146, 2398, 2443, 2521
BseLI CCNNNNNNNGG 5 cut(s) 1261, 1528, 1847, 1922, 2434
BseMI GCAATG 6 cut(s) 681, 1591, 1906, 1993, 2504, 2703
BseMII CTCAG 7 cut(s) 111, 447, 491, 678, 1473, 1845, 2046
BseNI ACTGG 5 cut(s) 749, 1546, 1750, 2259, 2677
BsePI GCGCGC 1 cut(s) 1636
BseRI GAGGAG 4 cut(s) 473, 542, 563, 1844
BseXI GCAGC 7 cut(s) 916, 1066, 1475, 2152, 2176, 2436, 2521
BseYI CCCAGC 1 cut(s) 1614
BsgI GTGCAG 1 cut(s) 637
Bsh1236I CGCG 3 cut(s) 435, 942, 1638
BshFI GGCC 4 cut(s) 274, 496, 1783, 1810
BsiHKAI GWGCWC 2 cut(s) 795, 2562
BsiHKCI CYCGRG 1 cut(s) 1092
BsiSI CCGG 1 cut(s) 1030
BslFI GGGAC 5 cut(s) 525, 1176, 1773, 1938, 2432
BslI CCNNNNNNNGG 5 cut(s) 1261, 1528, 1847, 1922, 2434
BsmAI GTCTC 3 cut(s) 1418, 1467, 2713
BsmFI GGGAC 5 cut(s) 525, 1176, 1773, 1938, 2432
BsnI GGCC 4 cut(s) 274, 496, 1783, 1810
BsoBI CYCGRG 1 cut(s) 1092
Bsp1286I GDGCHC 2 cut(s) 795, 2562
Bsp143I GATC 8 cut(s) 1557, 1768, 2260, 2297, 2332, 2533, 2660, 2770
BspACI CCGC 4 cut(s) 43, 1811, 2012, 2755
BspANI GGCC 4 cut(s) 274, 496, 1783, 1810
BspCNI CTCAG 7 cut(s) 112, 448, 492, 679, 1474, 1846, 2047
BspFNI CGCG 3 cut(s) 435, 942, 1638
BspHI TCATGA 3 cut(s) 841, 2335, 2463
BspLI GGNNCC 3 cut(s) 1173, 1620, 1926
BspMAI CTGCAG 3 cut(s) 962, 1399, 2454
BspMI ACCTGC 1 cut(s) 2503
BspPI GGATC 4 cut(s) 1565, 2255, 2305, 2655
BsrDI GCAATG 6 cut(s) 681, 1591, 1906, 1993, 2504, 2703
BsrI ACTGG 5 cut(s) 749, 1546, 1750, 2259, 2677
BssECI CCNNGG 3 cut(s) 170, 706, 1956
BssHII GCGCGC 1 cut(s) 1636
BssMI GATC 8 cut(s) 1557, 1768, 2260, 2297, 2332, 2533, 2660, 2770
BssNI GRCGYC 1 cut(s) 1683
BssSI CACGAG 1 cut(s) 1470
Bst2BI CACGAG 1 cut(s) 1470
Bst2UI CCWGG 3 cut(s) 171, 1703, 1958
Bst4CI ACNGT 6 cut(s) 926, 1502, 1764, 2068, 2137, 2498
Bst6I CTCTTC 7 cut(s) 19, 173, 263, 281, 1119, 1344, 2379
BstACI GRCGYC 1 cut(s) 1683
BstAPI GCANNNNNTGC 4 cut(s) 615, 729, 957, 1251
BstBAI YACGTR 1 cut(s) 2636
BstC8I GCNNGC 6 cut(s) 447, 730, 734, 1638, 2094, 2358
BstDSI CCRYGG 1 cut(s) 706
BstF5I GGATG 8 cut(s) 682, 824, 1891, 2014, 2146, 2398, 2443, 2521
BstFNI CGCG 3 cut(s) 435, 942, 1638
BstH2I RGCGCY 1 cut(s) 1837
BstHHI GCGC 5 cut(s) 435, 738, 1638, 1640, 1836
BstKTI GATC 8 cut(s) 1560, 1771, 2263, 2300, 2335, 2536, 2663, 2773
BstMAI GTCTC 3 cut(s) 1418, 1467, 2713
BstMBI GATC 8 cut(s) 1557, 1768, 2260, 2297, 2332, 2533, 2660, 2770
BstMWI GCNNNNNNNGC 6 cut(s) 615, 729, 872, 948, 957, 1251
BstNI CCWGG 3 cut(s) 171, 1703, 1958
BstNSI RCATGY 4 cut(s) 732, 1309, 2096, 2279
BstSCI CCNGG 4 cut(s) 169, 1029, 1701, 1956
BstSFI CTRYAG 3 cut(s) 958, 1395, 2450
BstUI CGCG 3 cut(s) 435, 942, 1638
BstV1I GCAGC 7 cut(s) 916, 1066, 1475, 2152, 2176, 2436, 2521
BstX2I RGATCY 2 cut(s) 2297, 2660
BstXI CCANNNNNNTGG 1 cut(s) 1964
BstYI RGATCY 2 cut(s) 2297, 2660
BsuI GTATCC 4 cut(s) 565, 669, 1742, 2917
BsuRI GGCC 4 cut(s) 274, 496, 1783, 1810
BtgI CCRYGG 1 cut(s) 706
BtgZI GCGATG 2 cut(s) 881, 2916
BtrI CACGTC 1 cut(s) 1970
BtsCI GGATG 8 cut(s) 682, 824, 1891, 2014, 2146, 2398, 2443, 2521
BtsI GCAGTG 3 cut(s) 815, 1288, 2239
BtsIMutI CAGTG 8 cut(s) 815, 1288, 1553, 2034, 2191, 2239, 2494, 2826
BveI ACCTGC 1 cut(s) 2503
Cac8I GCNNGC 6 cut(s) 447, 730, 734, 1638, 2094, 2358
CaiI CAGNNNCTG 1 cut(s) 990
CciI TCATGA 3 cut(s) 841, 2335, 2463
CfoI GCGC 5 cut(s) 435, 738, 1638, 1640, 1836
Cfr13I GGNCC 1 cut(s) 1925
Csp6I GTAC 3 cut(s) 767, 1498, 2633
CspCI CAANNNNNGTGG 2 cut(s) 1773, 1808
CviQI GTAC 3 cut(s) 767, 1498, 2633
DpnI GATC 8 cut(s) 1559, 1770, 2262, 2299, 2334, 2535, 2662, 2772
DpnII GATC 8 cut(s) 1557, 1768, 2260, 2297, 2332, 2533, 2660, 2770
DraI TTTAAA 1 cut(s) 1536
EaeI YGGCCR 2 cut(s) 1781, 1808
Eam1104I CTCTTC 7 cut(s) 19, 173, 263, 281, 1119, 1344, 2379
EarI CTCTTC 7 cut(s) 19, 173, 263, 281, 1119, 1344, 2379
Eco147I AGGCCT 2 cut(s) 274, 496
Eco32I GATATC 2 cut(s) 1519, 1723
Eco47I GGWCC 1 cut(s) 1925
Eco57I CTGAAG 3 cut(s) 90, 153, 2058
Eco88I CYCGRG 1 cut(s) 1092
EcoRI GAATTC 2 cut(s) 837, 2480
EcoRII CCWGG 3 cut(s) 169, 1701, 1956
EcoRV GATATC 2 cut(s) 1519, 1723
EcoT22I ATGCAT 3 cut(s) 1307, 1453, 2687
FalI AAGNNNNNCTT 4 cut(s) 1375, 1407, 2031, 2063
FaqI GGGAC 5 cut(s) 525, 1176, 1773, 1938, 2432
FauNDI CATATG 2 cut(s) 1006, 1231
FbaI TGATCA 1 cut(s) 2533
FblI GTMKAC 1 cut(s) 2431
Fnu4HI GCNGC 9 cut(s) 44, 930, 1055, 1464, 1811, 2166, 2190, 2450, 2510
FokI GGATG 8 cut(s) 689, 811, 1878, 2021, 2153, 2405, 2450, 2508
Fsp4HI GCNGC 9 cut(s) 44, 930, 1055, 1464, 1811, 2166, 2190, 2450, 2510
FspBI CTAG 3 cut(s) 1058, 1188, 1292
GlaI GCGC 5 cut(s) 434, 737, 1637, 1639, 1835
GluI GCNGC 9 cut(s) 44, 930, 1055, 1464, 1811, 2166, 2190, 2450, 2510
GsaI CCCAGC 1 cut(s) 1618
GsuI CTGGAG 3 cut(s) 890, 1533, 2858
HaeII RGCGCY 1 cut(s) 1837
HaeIII GGCC 4 cut(s) 274, 496, 1783, 1810
HapII CCGG 1 cut(s) 1030
HhaI GCGC 5 cut(s) 435, 738, 1638, 1640, 1836
Hin1I GRCGYC 1 cut(s) 1683
Hin6I GCGC 5 cut(s) 433, 736, 1636, 1638, 1834
HinP1I GCGC 5 cut(s) 433, 736, 1636, 1638, 1834
HindIII AAGCTT 3 cut(s) 1362, 1988, 2570
HinfI GANTC 4 cut(s) 1036, 1976, 2174, 2387
HpaII CCGG 1 cut(s) 1030
Hpy166II GTNNAC 5 cut(s) 352, 1673, 2044, 2432, 2590
Hpy8I GTNNAC 5 cut(s) 352, 1673, 2044, 2432, 2590
HpyAV CCTTC 7 cut(s) 181, 352, 383, 588, 1037, 1750, 1847
HpyCH4III ACNGT 6 cut(s) 926, 1502, 1764, 2068, 2137, 2498
HpyCH4IV ACGT 5 cut(s) 1323, 1683, 1969, 2592, 2635
HpyF10VI GCNNNNNNNGC 6 cut(s) 615, 729, 872, 948, 957, 1251
HpySE526I ACGT 5 cut(s) 1323, 1683, 1969, 2592, 2635
Hsp92I GRCGYC 1 cut(s) 1683
HspAI GCGC 5 cut(s) 433, 736, 1636, 1638, 1834
Ksp22I TGATCA 1 cut(s) 2533
Kzo9I GATC 8 cut(s) 1557, 1768, 2260, 2297, 2332, 2533, 2660, 2770
LmnI GCTCC 7 cut(s) 505, 529, 909, 1171, 1831, 1960, 2557
Lsp1109I GCAGC 7 cut(s) 916, 1066, 1475, 2152, 2176, 2436, 2521
MaeI CTAG 3 cut(s) 1058, 1188, 1292
MaeII ACGT 5 cut(s) 1323, 1683, 1969, 2592, 2635
MaeIII GTNAC 5 cut(s) 373, 1072, 1981, 2643, 2824
MalI GATC 8 cut(s) 1559, 1770, 2262, 2299, 2334, 2535, 2662, 2772
MboI GATC 8 cut(s) 1557, 1768, 2260, 2297, 2332, 2533, 2660, 2770
MfeI CAATTG 4 cut(s) 718, 1049, 2125, 2265
MflI RGATCY 2 cut(s) 2297, 2660
MhlI GDGCHC 2 cut(s) 795, 2562
MlsI TGGCCA 1 cut(s) 1783
MluNI TGGCCA 1 cut(s) 1783
MlyI GAGTC 1 cut(s) 2396
MmeI TCCRAC 4 cut(s) 1986, 2260, 2361, 2370
Mox20I TGGCCA 1 cut(s) 1783
Mph1103I ATGCAT 3 cut(s) 1307, 1453, 2687
MroXI GAANNNNTTC 1 cut(s) 2471
MscI TGGCCA 1 cut(s) 1783
MseI TTAA 7 cut(s) 753, 806, 1535, 1610, 2574, 2612, 2654
MslI CAYNNNNRTG 2 cut(s) 1219, 2039
Msp20I TGGCCA 1 cut(s) 1783
MspI CCGG 1 cut(s) 1030
MspR9I CCNGG 4 cut(s) 171, 1031, 1703, 1958
MunI CAATTG 4 cut(s) 718, 1049, 2125, 2265
MvaI CCWGG 3 cut(s) 171, 1703, 1958
MvnI CGCG 3 cut(s) 435, 942, 1638
MwoI GCNNNNNNNGC 6 cut(s) 615, 729, 872, 948, 957, 1251
NciI CCSGG 1 cut(s) 1031
NdeI CATATG 2 cut(s) 1006, 1231
NdeII GATC 8 cut(s) 1557, 1768, 2260, 2297, 2332, 2533, 2660, 2770
NlaIV GGNNCC 3 cut(s) 1173, 1620, 1926
NmuCI GTSAC 3 cut(s) 373, 1072, 2824
NsiI ATGCAT 3 cut(s) 1307, 1453, 2687
NspI RCATGY 4 cut(s) 732, 1309, 2096, 2279
OliI CACNNNNGTG 1 cut(s) 2039
PaeI GCATGC 2 cut(s) 732, 2096
PagI TCATGA 3 cut(s) 841, 2335, 2463
PauI GCGCGC 1 cut(s) 1636
PceI AGGCCT 2 cut(s) 274, 496
PciI ACATGT 1 cut(s) 2275
PcsI WCGNNNNNNNCGW 1 cut(s) 1768
PdmI GAANNNNTTC 1 cut(s) 2471
PfeI GAWTC 3 cut(s) 1036, 1976, 2174
PflFI GACNNNGTC 1 cut(s) 2705
PkrI GCNGC 9 cut(s) 45, 931, 1056, 1465, 1812, 2167, 2191, 2451, 2511
PleI GAGTC 1 cut(s) 2395
PpsI GAGTC 1 cut(s) 2395
Ppu21I YACGTR 1 cut(s) 2636
PscI ACATGT 1 cut(s) 2275
Psp6I CCWGG 3 cut(s) 169, 1701, 1956
PspFI CCCAGC 1 cut(s) 1614
PspGI CCWGG 3 cut(s) 169, 1701, 1956
PspN4I GGNNCC 3 cut(s) 1173, 1620, 1926
PspPI GGNCC 1 cut(s) 1925
PstI CTGCAG 3 cut(s) 962, 1399, 2454
PstNI CAGNNNCTG 1 cut(s) 990
PsuI RGATCY 2 cut(s) 2297, 2660
PsyI GACNNNGTC 1 cut(s) 2705
PteI GCGCGC 1 cut(s) 1636
RsaI GTAC 3 cut(s) 768, 1499, 2634
RsaNI GTAC 3 cut(s) 767, 1498, 2633
RseI CAYNNNNRTG 2 cut(s) 1219, 2039
SaqAI TTAA 7 cut(s) 753, 806, 1535, 1610, 2574, 2612, 2654
SatI GCNGC 9 cut(s) 44, 930, 1055, 1464, 1811, 2166, 2190, 2450, 2510
Sau3AI GATC 8 cut(s) 1557, 1768, 2260, 2297, 2332, 2533, 2660, 2770
Sau96I GGNCC 1 cut(s) 1925
ScaI AGTACT 1 cut(s) 768
SchI GAGTC 1 cut(s) 2396
ScrFI CCNGG 4 cut(s) 171, 1031, 1703, 1958
SduI GDGCHC 2 cut(s) 795, 2562
SfcI CTRYAG 3 cut(s) 958, 1395, 2450
SinI GGWCC 1 cut(s) 1925
SmiMI CAYNNNNRTG 2 cut(s) 1219, 2039
SpeI ACTAGT 1 cut(s) 1187
SphI GCATGC 2 cut(s) 732, 2096
SseBI AGGCCT 2 cut(s) 274, 496
SsiI CCGC 4 cut(s) 43, 1811, 2012, 2755
SspMI CTAG 3 cut(s) 1058, 1188, 1292
StuI AGGCCT 2 cut(s) 274, 496
StyD4I CCNGG 4 cut(s) 169, 1029, 1701, 1956
TaaI ACNGT 6 cut(s) 926, 1502, 1764, 2068, 2137, 2498
TaiI ACGT 5 cut(s) 1326, 1686, 1972, 2595, 2638
TaqI TCGA 3 cut(s) 1425, 1754, 1771
TatI WGTACW 2 cut(s) 766, 1497
TauI GCSGC 2 cut(s) 46, 1813
TfiI GAWTC 3 cut(s) 1036, 1976, 2174
Tru1I TTAA 7 cut(s) 753, 806, 1535, 1610, 2574, 2612, 2654
Tru9I TTAA 7 cut(s) 753, 806, 1535, 1610, 2574, 2612, 2654
TscAI CASTG 8 cut(s) 822, 1288, 1553, 2041, 2191, 2239, 2501, 2833
TseFI GTSAC 3 cut(s) 373, 1072, 2824
TseI GCWGC 7 cut(s) 929, 1054, 1463, 2165, 2189, 2449, 2509
Tsp45I GTSAC 3 cut(s) 373, 1072, 2824
TspGWI ACGGA 3 cut(s) 295, 539, 2417
TspRI CASTG 8 cut(s) 822, 1288, 1553, 2041, 2191, 2239, 2501, 2833
Tth111I GACNNNGTC 1 cut(s) 2705
VpaK11BI GGWCC 1 cut(s) 1925
XapI RAATTY 3 cut(s) 837, 2115, 2480
XbaI TCTAGA 1 cut(s) 1291
XceI RCATGY 4 cut(s) 732, 1309, 2096, 2279
XcmI CCANNNNNNNNNTGG 2 cut(s) 1629, 1742
XmiI GTMKAC 1 cut(s) 2431
XmnI GAANNNNTTC 1 cut(s) 2471
XspI CTAG 3 cut(s) 1058, 1188, 1292
ZraI GACGTC 1 cut(s) 1684
ZrmI AGTACT 1 cut(s) 768
Zsp2I ATGCAT 3 cut(s) 1307, 1453, 2687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.