MD06G1012500.v1.1

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000280
Physical Location & Seq
Reverse (-)
1590799 .. 1599810
9012 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1012500.v1.1.491

Sequence Viewer

Length: 3141 bp
ATGGCGAGGGGAAGAGGAAGAGGGAGAGGCAGAGGGAGAGGAAGACCCAGAATGGTGCCGGAAAATCATGGGTCCACCACCAGTGTCGAAAAGGATGGTGCTTTAGAGGCGGAGGAGGTGGGTTTGGAGAATCAGAGTGAAGGGTTGAAAATGGAAGTGGAAGTGGTTGCTGCTGTGACTGAGAAGAAGAAGCGCGGTAGGAAAAGGAAGACTGATTTGGAGGCTGTGAAGGCCGCGGAAGGCGGCGACGGAGGTGCTTCTGCCGCCAAGGAGGAAGGGGAGGCGGAGGAGGAGGGGGTTTTGGGAAATCATAATGGAACACACGGGGAGGAAGCTAAAGGAGTTGAATTGAATCAGAATGGAGCGCAACGTCGAAGCAAGAGAAGCAGAAATTTGGGGGTGGAGTATTTGGAGAAGGATGAGCACGAAAGCGGGGACGAATGCAGACACAATGGCGGTGCTTCTGTGAAGAAGCGCGGTGGGAGAGGTCGGAAAAAGTTGAGATTTGTAGAGGGAAAGGGAAGAACTGTTGGTTTGGAAGGGAATGGTGTAGTTGATGAGTTGAAATGGGAAGAAGGCAGAGGAGACAATGGAAATAGGGCCCCTAAGAAACGTGATAATGGGGGTAGGGAGGATGCAGAAGATGAACAAGTGGGGCATTCTGATGACACCGATATGGAGAAAGAAGGTTTGCGAAGAAGCAAGAGAGCAGATTATTCAATTAGGGGCGTCAAGGATCCTCCGAACCAGGAAGAAAGAAAAGTAAATAAGCAGTCCAAGAAATTTGTTGAGGAGGTTTCGTTGATGTGCCATCAATGTCAGAGGAATGACAAAGGCCGGGTAGTTCGCTGCAAAGAGTGTAAGAGGAAGCGATTTTGTATTCCTTGCATACAGAACTGGTACCCTTATACATCAGAGGATGCCATTGCTGAATCTTGTCCAGTATGCCGAAAAAATTGCAATTGCAAAGCATGCTTGCGCTTAGATTATCAGTCTGAGAAGGATGTTTACCCTGAATTTGAAGTTACCAAGGAGGAGAAAGTTGAGCACTCTAAGTATTTGATCCATACTTTGCTTCCATTTTTGAAAAGACTTAATGCTGAACAAGTGACGGAGATGGAGATCGAGGCTACAAGACAAGGGATATCCCCTTTGGAGCTAAAGACAAAAAAGTCAGATGTAGATCCTGATGAGCGTGTGTTTTGCAACAACTGCAAAACTTCCATCTTTGACTTTCACAGAAGCTGTCCTGGATGTTCATATGACCTCTGCCTTATCTGTTGTGGGGAGATTCGAGATGGATGCTTGCAGGGAGGTGGGGAAGAAATGATTATGGAATATGTGAGTCGAGGCCTAGACTATTTGCATGGGGAGGAGGTAAAAGTGAAACTGCCTTTGGAAGCTAGCCCCAAGTCTTCTGTTAGATCAACATTTGAGTGGAAACCAAATGACAATGGTAGTATTTCTTGTCCTCCAAAGGACATGGGTGGTTGTGGTGATGGTATATTAGAATTGAGATGCTTGTTTCCCGAAAATCACCTCATGGAGTTGGTAAAGAAAGCAGAAGAGATAGACAAAACTTACAAACTAATGAATGCAAGTGAAACTGGTGCAGAGATGTGTTCATGTCTCAAATCTGTTGATGATGTTAACTCAAGCACTAAAATAAGGAAAGCGGCTTCTAGAGATGCTTCGGATGATAACTACTTGTACTGTCCAAGGGCTGTAGATATCCAGCATGAGGATCTGAAGCATTTCCAGTGCCATTGGGTTAAGGGTGAGCCTGTAATTGTGAGCAATGTGCTCGAAACTACATTAGGCTTAAGCTGGGAGCCATTCGTCATGTGGCGGGCTTGTCGTCAAATGCAACATATAAAGCATGGTCAACATTTGGATGTCAAGACTATCGACTGCTTGGATTGGTGTGAGGCGGATATCAATATACACCAATTTTTTACTGGGTATTCGCAAGGTCGGTTTGACTGGAAAAAGTGGCCCCAGATTCTGAAACTGAAAGATTGGCCGCCGTCTACTTTATTTGAGAAACGCCTTCCTCGTCATGGTGCCGAGTTTATAAATTGTTTGCCATTCAAGGAATATACTCATCCTAGAAACGGTTATTTGAACATTGCTACCAAATTGCCTGATAAATATGTAAAGCCAGACATGGGGCCTAAGACATATATAGCTTATGGTGTTGCACAGGAGCTTGGACGTGGAGATTCTGTTACGAAGCTTCATTGTGATATGTCGGATGCAGTCAATGTTTTGACACATACCACTGAAGTGACTCTTAATCCTAAGCAGCTTGCCACTATAGAAGAGTTGAAGAAAAAACATTTTGAGCAAGACCAAAGGGAACTTTTTGGGAATTGTCAGACTCGGGTTGACTGTGTGGAGAGTAACAATCCAGATAGTGGTACATCAGTTCAGGAGTCCGACGAACCAACTGTTCGGCATGATGGAGATATTTCAAAGTGGTCTCAGAGTGTGGAGGAAAAAATAGATCATGATGAAAATGGTGAAAATTGTGAGGATTCGCGAAACAGTGTGAATAAGTTGGAAGGGTCAATTGAAGCTGAGGGAGGTGCTTTGTGGGACATTTTCCGGAGACAGGATGTTCCTAAGCTGCAAGAATATCTCAGGAAGCACTTTAAGGAATTCAGGCATACACACTGTTGTCCGTTGCAGCAGGTTATTCATCCCATACATGATCAAACCTTTTATCTGACCGTGGAGCATAAAAAGAAGCTAAAGGAAGAATACGGAATTGAACCGTGGACGTTTATCCAAAAACTTGGGGACGCTGTCTTTATTCCTGCAGGCTGTCCGCATCAAGTCAGAAACTTGAAGTCATGCATCAAAGTTGCATTGGACTTCGTTTCACCTGAAAATGTCAGTGAGTGCTTCCAGATGACAGAAGAATTCCGAAAACTTCCACCAAATCATAGGGCCAAAGAGGACAAGTTGGAGGTCAAGAAAATGATTGTTCATGCTGTTGAGGATGCTTTGGATCCGAATGCGAGGTCCAAGAAAACTACTGGGCCATCACCGAAAGGTAAGAAAGGTAAAAAACGAGGGCGAAAGAAAGCCAAGATCGTGAAAGGTAAGGGAGGTTCCTCACCCGTCATCAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

1047

Amino Acids

118.43

Weight (kDa)

7.31

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 267 - 328 6.5e-07 Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC PF02373 864 - 960 2.4e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2075
AasI GACNNNNNNGTC 1 cut(s) 1171
Acc36I ACCTGC 1 cut(s) 2683
Acc65I GGTACC 1 cut(s) 900
AccB1I GGYRCC 3 cut(s) 55, 900, 2063
AccB7I CCANNNNNTGG 1 cut(s) 2417
AccI GTMKAC 1 cut(s) 2030
AccII CGCG 4 cut(s) 195, 236, 477, 2542
AccIII TCCGGA 1 cut(s) 2607
AclWI GGATC 7 cut(s) 731, 744, 1057, 1178, 1752, 3008, 3021
AcoI YGGCCR 1 cut(s) 2021
AcsI RAATTY 5 cut(s) 391, 782, 1016, 2660, 2924
AcuI CTGAAG 2 cut(s) 1769, 2304
AcyI GRCGYC 1 cut(s) 729
AfaI GTAC 3 cut(s) 902, 1712, 2422
AfiI CCNNNNNNNGG 6 cut(s) 1741, 2060, 2114, 2168, 2417, 2614
AflII CTTAAG 1 cut(s) 1822
AjiI CACGTC 1 cut(s) 2216
AjnI CCWGG 2 cut(s) 747, 1249
AjuI GAANNNNNNNTTGG 4 cut(s) 200, 232, 1379, 1411
AleI CACNNNNGTG 1 cut(s) 2285
Alw21I GWGCWC 3 cut(s) 426, 1050, 1806
Alw26I GTCTC 4 cut(s) 579, 1634, 2487, 2605
AlwI GGATC 7 cut(s) 731, 744, 1057, 1178, 1752, 3008, 3021
AlwNI CAGNNNCTG 2 cut(s) 1245, 2005
Ama87I CYCGRG 1 cut(s) 2382
Aor13HI TCCGGA 1 cut(s) 2607
AoxI GGCC 9 cut(s) 231, 600, 835, 1351, 1994, 2021, 2171, 2952, 3044
ApaI GGGCCC 1 cut(s) 604
ApeKI GCWGC 5 cut(s) 170, 849, 2305, 2629, 2689
ApoI RAATTY 5 cut(s) 391, 782, 1016, 2660, 2924
ArsI GACNNNNNNTTYG 2 cut(s) 3011, 3043
Asp700I GAANNNNTTC 1 cut(s) 1754
Asp718I GGTACC 1 cut(s) 900
AspLEI GCGC 4 cut(s) 195, 367, 477, 981
AspS9I GGNCC 8 cut(s) 72, 600, 601, 1995, 2171, 2952, 3027, 3044
AsuC2I CCSGG 1 cut(s) 839
AsuHPI GGTGA 7 cut(s) 1508, 1529, 1790, 2534, 2877, 3042, 3114
AsuNHI GCTAGC 1 cut(s) 1403
AvaI CYCGRG 1 cut(s) 2382
AvaII GGWCC 2 cut(s) 72, 3027
BaeGI GKGCMC 1 cut(s) 604
BaeI ACNNNNGTAYC 2 cut(s) 2412, 2445
BamHI GGATCC 2 cut(s) 736, 3013
BanI GGYRCC 3 cut(s) 55, 900, 2063
BanII GRGCYC 1 cut(s) 604
BarI GAAGNNNNNNTAC 2 cut(s) 992, 1024
BbsI GAAGAC 3 cut(s) 49, 215, 1407
Bbv12I GWGCWC 3 cut(s) 426, 1050, 1806
BbvCI CCTCAGC 1 cut(s) 2580
BbvI GCAGC 5 cut(s) 157, 836, 2317, 2616, 2701
BccI CCATC 8 cut(s) 89, 819, 1111, 1232, 1292, 1493, 2456, 3055
BceAI ACGGC 1 cut(s) 2011
BcgI CGANNNNNNTGC 8 cut(s) 236, 270, 939, 973, 1284, 1318, 1786, 1820
BciT130I CCWGG 2 cut(s) 749, 1251
BclI TGATCA 1 cut(s) 2713
BcnI CCSGG 1 cut(s) 839
BcoDI GTCTC 4 cut(s) 579, 1634, 2487, 2605
BfaI CTAG 4 cut(s) 1355, 1404, 1683, 2109
BfmI CTRYAG 3 cut(s) 1725, 2316, 2820
BfrI CTTAAG 1 cut(s) 1822
BfuAI ACCTGC 1 cut(s) 2683
Bme1390I CCNGG 3 cut(s) 749, 839, 1251
Bme18I GGWCC 2 cut(s) 72, 3027
BmeT110I CYCGRG 1 cut(s) 2382
BmgBI CACGTC 1 cut(s) 2216
BmgT120I GGNCC 8 cut(s) 72, 600, 601, 1995, 2171, 2952, 3027, 3044
BmrFI CCNGG 3 cut(s) 749, 839, 1251
BmrI ACTGGG 2 cut(s) 1968, 3051
BmsI GCATC 9 cut(s) 625, 910, 1292, 1508, 1678, 2245, 2842, 2868, 2995
BmtI GCTAGC 1 cut(s) 1407
BmuI ACTGGG 2 cut(s) 1968, 3051
BpiI GAAGAC 3 cut(s) 49, 215, 1407
Bpu10I CCTNAGC 3 cut(s) 2301, 2580, 2625
BpuEI CTTGAG 1 cut(s) 1639
BpuMI CCSGG 1 cut(s) 839
BsaBI GATNNNNATC 2 cut(s) 1121, 1182
BsaHI GRCGYC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 2487
BsaJI CCNNGG 6 cut(s) 234, 267, 1029, 1718, 2733, 2777
BsaWI WCCGGW 1 cut(s) 2607
BsaXI ACNNNNNCTCC 4 cut(s) 785, 815, 2211, 2241
Bsc4I CCNNNNNNNGG 6 cut(s) 1741, 2060, 2114, 2168, 2417, 2614
Bse1I ACTGG 8 cut(s) 81, 902, 941, 1612, 1759, 1963, 1988, 3046
Bse3DI GCAATG 3 cut(s) 924, 1804, 2127
Bse8I GATNNNNATC 2 cut(s) 1121, 1182
BseAI TCCGGA 1 cut(s) 2607
BseBI CCWGG 2 cut(s) 749, 1251
BseDI CCNNGG 6 cut(s) 234, 267, 1029, 1718, 2733, 2777
BseJI GATNNNNATC 2 cut(s) 1121, 1182
BseLI CCNNNNNNNGG 6 cut(s) 1741, 2060, 2114, 2168, 2417, 2614
BseMI GCAATG 3 cut(s) 924, 1804, 2127
BseMII CTCAG 5 cut(s) 171, 987, 2498, 2571, 2656
BseNI ACTGG 8 cut(s) 81, 902, 941, 1612, 1759, 1963, 1988, 3046
BseRI GAGGAG 7 cut(s) 128, 302, 305, 597, 806, 1049, 1388
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 5 cut(s) 157, 836, 2317, 2616, 2701
BseYI CCCAGC 1 cut(s) 1827
BsgI GTGCAG 1 cut(s) 1632
Bsh1236I CGCG 4 cut(s) 195, 236, 477, 2542
BshFI GGCC 9 cut(s) 233, 602, 837, 1353, 1996, 2023, 2173, 2954, 3046
BshNI GGYRCC 3 cut(s) 55, 900, 2063
BsiHKAI GWGCWC 3 cut(s) 426, 1050, 1806
BsiHKCI CYCGRG 1 cut(s) 2382
BsiSI CCGG 3 cut(s) 59, 838, 2608
BslFI GGGAC 3 cut(s) 449, 2612, 2816
BslI CCNNNNNNNGG 6 cut(s) 1741, 2060, 2114, 2168, 2417, 2614
BsmAI GTCTC 4 cut(s) 579, 1634, 2487, 2605
BsmFI GGGAC 3 cut(s) 449, 2612, 2816
BsmI GAATGC 4 cut(s) 446, 658, 1600, 3025
BsnI GGCC 9 cut(s) 233, 602, 837, 1353, 1996, 2023, 2173, 2954, 3046
Bso31I GGTCTC 1 cut(s) 2487
BsoBI CYCGRG 1 cut(s) 2382
Bsp120I GGGCCC 1 cut(s) 600
Bsp1286I GDGCHC 4 cut(s) 426, 604, 1050, 1806
Bsp13I TCCGGA 1 cut(s) 2607
Bsp68I TCGCGA 1 cut(s) 2542
BspANI GGCC 9 cut(s) 233, 602, 837, 1353, 1996, 2023, 2173, 2954, 3046
BspCNI CTCAG 5 cut(s) 172, 988, 2497, 2572, 2655
BspEI TCCGGA 1 cut(s) 2607
BspFNI CGCG 4 cut(s) 195, 236, 477, 2542
BspHI TCATGA 1 cut(s) 2509
BspMAI CTGCAG 1 cut(s) 2824
BspMI ACCTGC 1 cut(s) 2683
BspOI GCTAGC 1 cut(s) 1407
BspPI GGATC 7 cut(s) 731, 744, 1057, 1178, 1752, 3008, 3021
BspT107I GGYRCC 3 cut(s) 55, 900, 2063
BspTI CTTAAG 1 cut(s) 1822
BspTNI GGTCTC 1 cut(s) 2487
BsrDI GCAATG 3 cut(s) 924, 1804, 2127
BsrI ACTGG 8 cut(s) 81, 902, 941, 1612, 1759, 1963, 1988, 3046
BssECI CCNNGG 6 cut(s) 234, 267, 1029, 1718, 2733, 2777
BssNI GRCGYC 1 cut(s) 729
BssT1I CCWWGG 3 cut(s) 267, 1029, 1718
Bst2UI CCWGG 2 cut(s) 749, 1251
Bst4CI ACNGT 9 cut(s) 529, 1715, 2117, 2393, 2452, 2549, 2678, 2734, 2778
Bst6I CTCTTC 4 cut(s) 7, 13, 1560, 2316
BstACI GRCGYC 1 cut(s) 729
BstAFI CTTAAG 1 cut(s) 1822
BstAPI GCANNNNNTGC 2 cut(s) 972, 1212
BstC8I GCNNGC 7 cut(s) 973, 977, 1307, 1405, 1851, 2310, 2824
BstDSI CCRYGG 3 cut(s) 234, 2733, 2777
BstFNI CGCG 4 cut(s) 195, 236, 477, 2542
BstHHI GCGC 4 cut(s) 195, 367, 477, 981
BstMAI GTCTC 4 cut(s) 579, 1634, 2487, 2605
BstMWI GCNNNNNNNGC 6 cut(s) 107, 230, 263, 384, 972, 1212
BstNI CCWGG 2 cut(s) 749, 1251
BstNSI RCATGY 1 cut(s) 975
BstSCI CCNGG 3 cut(s) 747, 837, 1249
BstSFI CTRYAG 3 cut(s) 1725, 2316, 2820
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 4 cut(s) 195, 236, 477, 2542
BstV1I GCAGC 5 cut(s) 157, 836, 2317, 2616, 2701
BstV2I GAAGAC 3 cut(s) 49, 215, 1407
BstX2I RGATCY 4 cut(s) 736, 1183, 1744, 3013
BstXI CCANNNNNNTGG 1 cut(s) 2798
BstYI RGATCY 4 cut(s) 736, 1183, 1744, 3013
BsuRI GGCC 9 cut(s) 233, 602, 837, 1353, 1996, 2023, 2173, 2954, 3046
BtgI CCRYGG 3 cut(s) 234, 2733, 2777
BtrI CACGTC 1 cut(s) 2216
BtsIMutI CAGTG 6 cut(s) 88, 1766, 2280, 2554, 2674, 2905
BtuMI TCGCGA 1 cut(s) 2542
BveI ACCTGC 1 cut(s) 2683
Cac8I GCNNGC 7 cut(s) 973, 977, 1307, 1405, 1851, 2310, 2824
CaiI CAGNNNCTG 2 cut(s) 1245, 2005
CciI TCATGA 1 cut(s) 2509
CfoI GCGC 4 cut(s) 195, 367, 477, 981
Cfr13I GGNCC 8 cut(s) 72, 600, 601, 1995, 2171, 2952, 3027, 3044
Cfr42I CCGCGG 1 cut(s) 237
CseI GACGC 2 cut(s) 718, 2813
Csp6I GTAC 3 cut(s) 901, 1711, 2421
CviQI GTAC 3 cut(s) 901, 1711, 2421
DrdI GACNNNNNNGTC 1 cut(s) 1171
DseDI GACNNNNNNGTC 1 cut(s) 1171
EaeI YGGCCR 1 cut(s) 2021
Eam1104I CTCTTC 4 cut(s) 7, 13, 1560, 2316
EarI CTCTTC 4 cut(s) 7, 13, 1560, 2316
EciI GGCGGA 3 cut(s) 125, 299, 1946
Eco130I CCWWGG 3 cut(s) 267, 1029, 1718
Eco147I AGGCCT 1 cut(s) 1353
Eco24I GRGCYC 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 2487
Eco32I GATATC 3 cut(s) 1146, 1732, 1936
Eco47I GGWCC 2 cut(s) 72, 3027
Eco57I CTGAAG 2 cut(s) 1769, 2304
Eco88I CYCGRG 1 cut(s) 2382
EcoO109I RGGNCCY 3 cut(s) 600, 601, 2171
EcoRI GAATTC 2 cut(s) 2660, 2924
EcoRII CCWGG 2 cut(s) 747, 1249
EcoRV GATATC 3 cut(s) 1146, 1732, 1936
EcoT14I CCWWGG 3 cut(s) 267, 1029, 1718
EcoT22I ATGCAT 1 cut(s) 2861
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 3 cut(s) 267, 1029, 1718
FalI AAGNNNNNCTT 2 cut(s) 2277, 2309
FaqI GGGAC 3 cut(s) 449, 2612, 2816
FauI CCCGC 2 cut(s) 425, 1842
FauNDI CATATG 1 cut(s) 1261
FbaI TGATCA 1 cut(s) 2713
FblI GTMKAC 1 cut(s) 2030
FriOI GRGCYC 1 cut(s) 604
FspBI CTAG 4 cut(s) 1355, 1404, 1683, 2109
GlaI GCGC 4 cut(s) 194, 366, 476, 980
GsaI CCCAGC 1 cut(s) 1831
HaeIII GGCC 9 cut(s) 233, 602, 837, 1353, 1996, 2023, 2173, 2954, 3046
HapII CCGG 3 cut(s) 59, 838, 2608
HgaI GACGC 2 cut(s) 718, 2813
HhaI GCGC 4 cut(s) 195, 367, 477, 981
Hin1I GRCGYC 1 cut(s) 729
Hin6I GCGC 4 cut(s) 193, 365, 475, 979
HinP1I GCGC 4 cut(s) 193, 365, 475, 979
HincII GTYRAC 3 cut(s) 1651, 1886, 2389
HindII GTYRAC 3 cut(s) 1651, 1886, 2389
HindIII AAGCTT 1 cut(s) 2234
HpaI GTTAAC 1 cut(s) 1651
HpaII CCGG 3 cut(s) 59, 838, 2608
HphI GGTGA 7 cut(s) 1508, 1529, 1790, 2534, 2877, 3042, 3114
Hpy166II GTNNAC 7 cut(s) 75, 1009, 1651, 1886, 2031, 2389, 2781
Hpy8I GTNNAC 7 cut(s) 75, 1009, 1651, 1886, 2031, 2389, 2781
Hpy99I CGWCG 3 cut(s) 251, 375, 2444
HpyCH4III ACNGT 9 cut(s) 529, 1715, 2117, 2393, 2452, 2549, 2678, 2734, 2778
HpyCH4IV ACGT 4 cut(s) 370, 613, 2215, 2783
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 230, 263, 384, 972, 1212
HpySE526I ACGT 4 cut(s) 370, 613, 2215, 2783
Hsp92I GRCGYC 1 cut(s) 729
HspAI GCGC 4 cut(s) 193, 365, 475, 979
Kpn2I TCCGGA 1 cut(s) 2607
KpnI GGTACC 1 cut(s) 904
Ksp22I TGATCA 1 cut(s) 2713
KspAI GTTAAC 1 cut(s) 1651
KspI CCGCGG 1 cut(s) 237
LmnI GCTCC 5 cut(s) 362, 1156, 1831, 2206, 2737
Lsp1109I GCAGC 5 cut(s) 157, 836, 2317, 2616, 2701
LweI GCATC 9 cut(s) 625, 910, 1292, 1508, 1678, 2245, 2842, 2868, 2995
MaeI CTAG 4 cut(s) 1355, 1404, 1683, 2109
MaeII ACGT 4 cut(s) 370, 613, 2215, 2783
MaeIII GTNAC 6 cut(s) 175, 1024, 1108, 2227, 2287, 2402
MfeI CAATTG 2 cut(s) 961, 2571
MflI RGATCY 4 cut(s) 736, 1183, 1744, 3013
MhlI GDGCHC 4 cut(s) 426, 604, 1050, 1806
MlyI GAGTC 4 cut(s) 1354, 2284, 2374, 2444
MmeI TCCRAC 5 cut(s) 470, 2232, 2463, 2541, 2949
Mph1103I ATGCAT 1 cut(s) 2861
MroI TCCGGA 1 cut(s) 2607
MroXI GAANNNNTTC 1 cut(s) 1754
MseI TTAA 6 cut(s) 1095, 1650, 1773, 1823, 2295, 2655
MslI CAYNNNNRTG 5 cut(s) 663, 674, 1435, 1893, 2285
MspA1I CMGCKG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 1822
MspI CCGG 3 cut(s) 59, 838, 2608
MspR9I CCNGG 3 cut(s) 749, 839, 1251
MunI CAATTG 2 cut(s) 961, 2571
Mva1269I GAATGC 4 cut(s) 446, 658, 1600, 3025
MvaI CCWGG 2 cut(s) 749, 1251
MvnI CGCG 4 cut(s) 195, 236, 477, 2542
MwoI GCNNNNNNNGC 6 cut(s) 107, 230, 263, 384, 972, 1212
NciI CCSGG 1 cut(s) 839
NdeI CATATG 1 cut(s) 1261
NheI GCTAGC 1 cut(s) 1403
NmeAIII GCCGAG 1 cut(s) 2092
NmuCI GTSAC 3 cut(s) 175, 1108, 2287
NruI TCGCGA 1 cut(s) 2542
NsiI ATGCAT 1 cut(s) 2861
NspI RCATGY 1 cut(s) 975
OliI CACNNNNGTG 1 cut(s) 2285
PaeI GCATGC 1 cut(s) 975
PagI TCATGA 1 cut(s) 2509
PceI AGGCCT 1 cut(s) 1353
PcsI WCGNNNNNNNCGW 1 cut(s) 2053
PctI GAATGC 4 cut(s) 446, 658, 1600, 3025
PdmI GAANNNNTTC 1 cut(s) 1754
PfeI GAWTC 7 cut(s) 130, 352, 932, 1291, 2002, 2222, 2537
PflFI GACNNNGTC 1 cut(s) 2807
PflMI CCANNNNNTGG 1 cut(s) 2417
PfoI TCCNGGA 1 cut(s) 1249
PleI GAGTC 4 cut(s) 1353, 2284, 2374, 2443
PpsI GAGTC 4 cut(s) 1353, 2284, 2374, 2443
PsiI TTATAA 1 cut(s) 2075
Psp6I CCWGG 2 cut(s) 747, 1249
PspFI CCCAGC 1 cut(s) 1827
PspGI CCWGG 2 cut(s) 747, 1249
PspOMI GGGCCC 1 cut(s) 600
PspPI GGNCC 8 cut(s) 72, 600, 601, 1995, 2171, 2952, 3027, 3044
PsrI GAACNNNNNNTAC 2 cut(s) 3100, 3132
PstI CTGCAG 1 cut(s) 2824
PstNI CAGNNNCTG 2 cut(s) 1245, 2005
PsuI RGATCY 4 cut(s) 736, 1183, 1744, 3013
PsyI GACNNNGTC 1 cut(s) 2807
RruI TCGCGA 1 cut(s) 2542
RsaI GTAC 3 cut(s) 902, 1712, 2422
RsaNI GTAC 3 cut(s) 901, 1711, 2421
RseI CAYNNNNRTG 5 cut(s) 663, 674, 1435, 1893, 2285
SacII CCGCGG 1 cut(s) 237
SaqAI TTAA 6 cut(s) 1095, 1650, 1773, 1823, 2295, 2655
Sau96I GGNCC 8 cut(s) 72, 600, 601, 1995, 2171, 2952, 3027, 3044
SbfI CCTGCAGG 1 cut(s) 2824
SchI GAGTC 4 cut(s) 1354, 2284, 2374, 2444
ScrFI CCNGG 3 cut(s) 749, 839, 1251
SdaI CCTGCAGG 1 cut(s) 2824
SduI GDGCHC 4 cut(s) 426, 604, 1050, 1806
SfaNI GCATC 9 cut(s) 625, 910, 1292, 1508, 1678, 2245, 2842, 2868, 2995
SfcI CTRYAG 3 cut(s) 1725, 2316, 2820
Sfr303I CCGCGG 1 cut(s) 237
SgrBI CCGCGG 1 cut(s) 237
SinI GGWCC 2 cut(s) 72, 3027
SmiMI CAYNNNNRTG 5 cut(s) 663, 674, 1435, 1893, 2285
SmlI CTYRAG 2 cut(s) 1654, 1822
SmoI CTYRAG 2 cut(s) 1654, 1822
SphI GCATGC 1 cut(s) 975
Sse8387I CCTGCAGG 1 cut(s) 2824
SseBI AGGCCT 1 cut(s) 1353
SspMI CTAG 4 cut(s) 1355, 1404, 1683, 2109
StuI AGGCCT 1 cut(s) 1353
StyD4I CCNGG 3 cut(s) 747, 837, 1249
StyI CCWWGG 3 cut(s) 267, 1029, 1718
TaaI ACNGT 9 cut(s) 529, 1715, 2117, 2393, 2452, 2549, 2678, 2734, 2778
TaiI ACGT 4 cut(s) 373, 616, 2218, 2786
TaqI TCGA 7 cut(s) 87, 373, 1125, 1294, 1348, 1806, 1908
TatI WGTACW 1 cut(s) 1710
TauI GCSGC 5 cut(s) 236, 246, 266, 1679, 2026
TfiI GAWTC 7 cut(s) 130, 352, 932, 1291, 2002, 2222, 2537
Tru1I TTAA 6 cut(s) 1095, 1650, 1773, 1823, 2295, 2655
Tru9I TTAA 6 cut(s) 1095, 1650, 1773, 1823, 2295, 2655
TscAI CASTG 6 cut(s) 88, 1766, 2287, 2554, 2681, 2905
TseFI GTSAC 3 cut(s) 175, 1108, 2287
TseI GCWGC 5 cut(s) 170, 849, 2305, 2629, 2689
Tsp45I GTSAC 3 cut(s) 175, 1108, 2287
TspDTI ATGAA 8 cut(s) 660, 1248, 1607, 1614, 2228, 2529, 2690, 2981
TspGWI ACGGA 4 cut(s) 264, 1127, 2673, 2781
TspRI CASTG 6 cut(s) 88, 1766, 2287, 2554, 2681, 2905
Tth111I GACNNNGTC 1 cut(s) 2807
Van91I CCANNNNNTGG 1 cut(s) 2417
Vha464I CTTAAG 1 cut(s) 1822
VpaK11BI GGWCC 2 cut(s) 72, 3027
XapI RAATTY 5 cut(s) 391, 782, 1016, 2660, 2924
XbaI TCTAGA 1 cut(s) 1682
XceI RCATGY 1 cut(s) 975
XcmI CCANNNNNNNNNTGG 2 cut(s) 1842, 1955
XmiI GTMKAC 1 cut(s) 2030
XmnI GAANNNNTTC 1 cut(s) 1754
XspI CTAG 4 cut(s) 1355, 1404, 1683, 2109
Zsp2I ATGCAT 1 cut(s) 2861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.