Rmu_sc0007777.1_g000029

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007777.1
OG0000280
Physical Location & Seq
Forward (+)
134705 .. 136305
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007777.1_g000029.1.cds

Sequence Viewer

Length: 993 bp
atggttgagaaatatggaaatcaggaatttgagtgtttcgatggtgagggaaagattattcagaggaatggtgtgggaactaggaggctgaggtcttcttctgcaaagtcaaaggttgaatggaaagcagataaagatggaagcattcgttgccccccagagcacaaggaaggttgcgggttgagttgggaaccctttgtcatgtggagggctattcgtcaagttaataatactaagcatgagaaggatgtggaagttcaagccattgattgcttggattggtgtttcatcgatgtcaatatgcacaaattttttactagatattatgaaggcatgtttgatacaaaagactaccctcggatcctaaaacttaaagactggccgccctccactgattttggtaaacgtcttcctcgccatggcaaggagtttgtgtgttgcttgcctctcaaggaatacactcatccaacaggtagtattctaaaccttgcttgccacttgcccaaaagagctgtcaaacctgacttagggccaaagacatacatttcatatggggttgctcaggaacttggacgcggagattctgtgacaaagcttcactgtgatatgtctgatgcagttaacattctgacccatgctactgaagtgacctttgaacctaaacatcttgctgctatagaagagttgaagagaaagcacaaggagcaagaccaaaaggagatttttggaaattttggtcaaaggagactcccttgcttgatgatgcaggtgaaggaggcgctctatgggacattttcagggctgtccacatcagaggagttccgcactctcccgacagatcatagggcaagcgaggacaagttagaatataaaaaaattattgttcatgctgtctttgatgctgtgaaggagattactggtgggaaggagaggcctaaggatgagaggcctatatgtgcgaggcgtaagggaaaggcctatatgtgtctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

330

Amino Acids

38.01

Weight (kDa)

8.78

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 757
Acc36I ACCTGC 1 cut(s) 757
AccII CGCG 1 cut(s) 576
AciI CCGC 4 cut(s) 177, 383, 576, 823
AclWI GGATC 2 cut(s) 355, 368
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 3 cut(s) 26, 308, 730
AcuI CTGAAG 1 cut(s) 663
AfiI CCNNNNNNNGG 3 cut(s) 419, 424, 527
AgsI TTSAA 4 cut(s) 119, 260, 656, 688
AluBI AGCT 2 cut(s) 512, 595
AluI AGCT 2 cut(s) 512, 595
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 739
AlwI GGATC 2 cut(s) 355, 368
AoxI GGCC 5 cut(s) 380, 530, 932, 947, 975
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 3 cut(s) 26, 308, 730
ArsI GACNNNNNNTTYG 2 cut(s) 498, 530
AspLEI GCGC 1 cut(s) 781
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 2 cut(s) 56, 781
AxyI CCTNAGG 1 cut(s) 936
BamHI GGATCC 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 87, 401
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 658
BccI CCATC 2 cut(s) 35, 131
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 2 cut(s) 81, 318
BfmI CTRYAG 1 cut(s) 675
BfoI RGCGCY 1 cut(s) 782
BfuAI ACCTGC 1 cut(s) 757
BisI GCNGC 2 cut(s) 383, 672
BlsI GCNGC 2 cut(s) 384, 673
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 2 cut(s) 192, 362
BmsI GCATC 3 cut(s) 604, 753, 889
BpiI GAAGAC 2 cut(s) 87, 401
Bpu10I CCTNAGC 2 cut(s) 89, 561
BpuEI CTTGAG 1 cut(s) 434
Bsa29I ATCGAT 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 356, 418
BsaXI ACNNNNNCTCC 4 cut(s) 419, 449, 570, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 424, 527
Bse1I ACTGG 2 cut(s) 383, 922
Bse21I CCTNAGG 1 cut(s) 936
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 356, 418
BseGI GGATG 3 cut(s) 253, 463, 946
BseLI CCNNNNNNNGG 3 cut(s) 419, 424, 527
BseMII CTCAG 2 cut(s) 80, 575
BseNI ACTGG 2 cut(s) 383, 922
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 5 cut(s) 382, 532, 934, 949, 977
BshVI ATCGAT 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 3 cut(s) 419, 424, 527
BsmAI GTCTC 1 cut(s) 739
BsmFI GGGAC 1 cut(s) 802
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 5 cut(s) 382, 532, 934, 949, 977
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 360, 838
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 4 cut(s) 177, 383, 576, 823
BspANI GGCC 5 cut(s) 382, 532, 934, 949, 977
BspCNI CTCAG 2 cut(s) 81, 574
BspDI ATCGAT 1 cut(s) 291
BspFNI CGCG 1 cut(s) 576
BspLI GGNNCC 2 cut(s) 192, 362
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 2 cut(s) 355, 368
BsrI ACTGG 2 cut(s) 383, 922
BssECI CCNNGG 2 cut(s) 356, 418
BssMI GATC 2 cut(s) 360, 838
BssT1I CCWWGG 1 cut(s) 418
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 2 cut(s) 675, 683
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 3 cut(s) 443, 493, 850
BstDEI CTNAG 5 cut(s) 89, 234, 526, 561, 936
BstDSI CCRYGG 1 cut(s) 418
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 3 cut(s) 253, 463, 946
BstFNI CGCG 1 cut(s) 576
BstH2I RGCGCY 1 cut(s) 782
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 2 cut(s) 363, 841
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 2 cut(s) 360, 838
BstMWI GCNNNNNNNGC 2 cut(s) 150, 703
BstNSI RCATGY 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 675
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 2 cut(s) 87, 401
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 936
BsuRI GGCC 5 cut(s) 382, 532, 934, 949, 977
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 3 cut(s) 253, 463, 946
BtsIMutI CAGTG 2 cut(s) 390, 598
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 3 cut(s) 443, 493, 850
CfoI GCGC 1 cut(s) 781
Cfr13I GGNCC 1 cut(s) 530
ClaI ATCGAT 1 cut(s) 291
CseI GACGC 1 cut(s) 582
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 6 cut(s) 202, 239, 334, 419, 635, 887
DdeI CTNAG 5 cut(s) 89, 234, 526, 561, 936
DpnI GATC 2 cut(s) 362, 840
DpnII GATC 2 cut(s) 360, 838
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 675, 683
EarI CTCTTC 2 cut(s) 675, 683
Eco130I CCWWGG 1 cut(s) 418
Eco147I AGGCCT 3 cut(s) 934, 949, 977
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 936
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 6 cut(s) 205, 242, 337, 422, 638, 890
FaqI GGGAC 1 cut(s) 802
FatI CATG 6 cut(s) 201, 238, 333, 418, 634, 886
FauI CCCGC 1 cut(s) 170
FauNDI CATATG 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 383, 672
FokI GGATG 3 cut(s) 260, 450, 953
Fsp4HI GCNGC 2 cut(s) 383, 672
FspBI CTAG 2 cut(s) 81, 318
GlaI GCGC 1 cut(s) 780
GluI GCNGC 2 cut(s) 383, 672
HaeII RGCGCY 1 cut(s) 782
HaeIII GGCC 5 cut(s) 382, 532, 934, 949, 977
HgaI GACGC 1 cut(s) 582
HhaI GCGC 1 cut(s) 781
Hin1II CATG 6 cut(s) 205, 242, 337, 422, 638, 890
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 581, 747
HpaI GTTAAC 1 cut(s) 622
HphI GGTGA 2 cut(s) 56, 781
Hpy166II GTNNAC 3 cut(s) 404, 622, 807
Hpy188I TCNGA 5 cut(s) 63, 360, 613, 630, 814
Hpy188III TCNNGA 3 cut(s) 23, 563, 832
Hpy8I GTNNAC 3 cut(s) 404, 622, 807
HpyAV CCTTC 6 cut(s) 164, 238, 323, 766, 901, 919
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 4 cut(s) 104, 304, 617, 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 703
HpyF3I CTNAG 5 cut(s) 89, 234, 526, 561, 936
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 6 cut(s) 205, 242, 337, 422, 638, 890
HspAI GCGC 1 cut(s) 779
KspAI GTTAAC 1 cut(s) 622
Kzo9I GATC 2 cut(s) 360, 838
LmnI GCTCC 1 cut(s) 703
LpnPI CCDG 9 cut(s) 8, 171, 364, 456, 534, 548, 752, 783, 903
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 3 cut(s) 604, 753, 889
MaeI CTAG 2 cut(s) 81, 318
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 586, 646
MalI GATC 2 cut(s) 362, 840
MboI GATC 2 cut(s) 360, 838
MboII GAAGA 5 cut(s) 87, 90, 401, 692, 700
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 4 cut(s) 26, 308, 730, 876
MlyI GAGTC 1 cut(s) 741
MmeI TCCRAC 1 cut(s) 491
MseI TTAA 4 cut(s) 225, 372, 621, 991
Mva1269I GAATGC 1 cut(s) 144
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 2 cut(s) 150, 703
NcoI CCATGG 1 cut(s) 418
NdeI CATATG 1 cut(s) 550
NdeII GATC 2 cut(s) 360, 838
NlaIII CATG 6 cut(s) 205, 242, 337, 422, 638, 890
NlaIV GGNNCC 2 cut(s) 192, 362
NmuCI GTSAC 2 cut(s) 586, 646
NspI RCATGY 1 cut(s) 337
PaqCI CACCTGC 1 cut(s) 757
PceI AGGCCT 3 cut(s) 934, 949, 977
PctI GAATGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 581
PkrI GCNGC 2 cut(s) 384, 673
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 192, 362
PspPI GGNCC 1 cut(s) 530
PsuI RGATCY 1 cut(s) 360
SaqAI TTAA 4 cut(s) 225, 372, 621, 991
SatI GCNGC 2 cut(s) 383, 672
Sau3AI GATC 2 cut(s) 360, 838
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 1 cut(s) 741
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 3 cut(s) 604, 753, 889
SfcI CTRYAG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 4 cut(s) 26, 308, 730, 876
SseBI AGGCCT 3 cut(s) 934, 949, 977
SsiI CCGC 4 cut(s) 177, 383, 576, 823
SspMI CTAG 2 cut(s) 81, 318
StuI AGGCCT 3 cut(s) 934, 949, 977
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 39, 291
TasI AATT 4 cut(s) 26, 308, 730, 876
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 4 cut(s) 225, 372, 621, 991
Tru9I TTAA 4 cut(s) 225, 372, 621, 991
TscAI CASTG 2 cut(s) 397, 605
TseFI GTSAC 2 cut(s) 586, 646
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 2 cut(s) 586, 646
TspDTI ATGAA 4 cut(s) 277, 342, 537, 875
TspRI CASTG 2 cut(s) 397, 605
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 3 cut(s) 26, 308, 730
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 2 cut(s) 81, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.