Rh3CG118400

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000280
Physical Location & Seq
Forward (+)
9556879 .. 9557856
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG118400.1

Sequence Viewer

Length: 978 bp
ATGTGTCTTAAGTGTTTCCGGGAGATTAGGGGTGGAGACTTGAAGGGAGGTGGGGAGGAAATGGTTGAGAAATACGGAAATCGGGGATTTGAGTGTTTCGATGGTGAGGGAAAGATTATTCAGAGGAATGGTGTGGGAACTAGGAGGCTGAGGTCTTCTTCTGCAAAGTCAAAGTTTGAATGGAAAGCAGATAAAGATGGAAGCATTCGTTGCCCCCCAGAGCACAAGGAAGGTTGCGGTAAGTATCATTTAGAACTTAGATATTTATTTCCTAGAAATAAAGTCATGGAATTGGTAGAGAAAGCTGAAAATATAGATGAGAGCTATAAAATTTTACATGCTAGTAGTGAAACTCGTGAAGAAAGTTGTTCATGTATAAACCTGGTGGATGATGTGAAGTGTAGAAAAGCAGCTTGTAGAGGTGATTCGAAGGACAACTATTTGTTCTGTCCAAGGGCTGAAAGCATTCAACCCGAGGATTTTGAGCATTTTCAGAGGCATTGGATGAGGTATGAGCCTGTTATTGTGAGCAATGCGCTTGAAAATGGTTCAGGGTTGAGTTGGGAACCCTTAGTCATGTGGAGGGCTTTTCGTCAAGTTAATAATACTAAGCATGAGAAGGATGTGGAAGTTCAGACCATTGATTGCTTGGATTGGTGTTTCATCGATGTCAATGTGCACAAATTTTTTACTGGATATTCTGAAGGCATGTTTGATACAAAAGACTGCCCTCGGATCCTAAAACTTAAAGACTGGCCGCCCTCCATTGATTTTGATAAACGTCTTCCTCGCCATGGCAAGGAGTTTGTGTGTTGCTTTCCTCTCAAGGAATACACTCATCCAACAGGTAGTATTCTAAACCTTGCTTGCCACTTGCCCAAAAGAGCTGTCAAACCTGACTTGGGGCCAAAGACATACATTGCATATGGCGTTGCTCATGAACTTGGACGCGGAGATTGTGACAAAGCTTCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

325

Amino Acids

37.4

Weight (kDa)

7.48

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 951
AciI CCGC 3 cut(s) 237, 758, 951
AclWI GGATC 2 cut(s) 730, 743
AcoI YGGCCR 1 cut(s) 755
AcsI RAATTY 2 cut(s) 330, 683
AcuI CTGAAG 1 cut(s) 723
AfiI CCNNNNNNNGG 3 cut(s) 794, 799, 902
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 4 cut(s) 43, 179, 470, 542
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 5 cut(s) 305, 324, 413, 887, 968
AluI AGCT 5 cut(s) 305, 324, 413, 887, 968
Alw21I GWGCWC 2 cut(s) 225, 681
Alw26I GTCTC 1 cut(s) 30
Alw44I GTGCAC 1 cut(s) 677
AlwI GGATC 2 cut(s) 730, 743
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 2 cut(s) 755, 905
ApaLI GTGCAC 1 cut(s) 677
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 2 cut(s) 330, 683
ArsI GACNNNNNNTTYG 2 cut(s) 873, 905
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 1 cut(s) 905
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 116, 434
AsuII TTCGAA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 681
BamHI GGATCC 1 cut(s) 735
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 147, 776
Bbv12I GWGCWC 2 cut(s) 225, 681
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 422
BccI CCATC 2 cut(s) 95, 191
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 3 cut(s) 141, 273, 342
BfrI CTTAAG 1 cut(s) 8
BisI GCNGC 2 cut(s) 411, 758
BlsI GCNGC 2 cut(s) 412, 759
Bme1390I CCNGG 2 cut(s) 20, 383
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 905
BmiI GGNNCC 3 cut(s) 567, 737, 906
BmrFI CCNGG 2 cut(s) 20, 383
BpiI GAAGAC 2 cut(s) 147, 776
Bpu10I CCTNAGC 1 cut(s) 149
Bpu14I TTCGAA 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 1 cut(s) 20
Bsa29I ATCGAT 1 cut(s) 666
BsaJI CCNNGG 4 cut(s) 452, 474, 731, 793
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 3 cut(s) 794, 799, 902
Bse1I ACTGG 2 cut(s) 697, 758
Bse3DI GCAATG 2 cut(s) 538, 918
BseBI CCWGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 666
BseDI CCNNGG 4 cut(s) 452, 474, 731, 793
BseGI GGATG 4 cut(s) 394, 510, 628, 838
BseLI CCNNNNNNNGG 3 cut(s) 794, 799, 902
BseMI GCAATG 2 cut(s) 538, 918
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 697, 758
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 951
BshFI GGCC 2 cut(s) 757, 907
BshVI ATCGAT 1 cut(s) 666
BsiHKAI GWGCWC 2 cut(s) 225, 681
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 794, 799, 902
BsmAI GTCTC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 204, 465
BsnI GGCC 2 cut(s) 757, 907
BsoBI CYCGRG 1 cut(s) 473
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 225, 681
Bsp143I GATC 1 cut(s) 735
Bsp19I CCATGG 1 cut(s) 793
BspACI CCGC 3 cut(s) 237, 758, 951
BspANI GGCC 2 cut(s) 757, 907
BspCNI CTCAG 1 cut(s) 141
BspDI ATCGAT 1 cut(s) 666
BspFNI CGCG 1 cut(s) 951
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 3 cut(s) 567, 737, 906
BspPI GGATC 2 cut(s) 730, 743
BspT104I TTCGAA 1 cut(s) 428
BspTI CTTAAG 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 538, 918
BsrI ACTGG 2 cut(s) 697, 758
BssECI CCNNGG 4 cut(s) 452, 474, 731, 793
BssMI GATC 1 cut(s) 735
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 2 cut(s) 452, 793
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 975
BstAFI CTTAAG 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 868
BstDEI CTNAG 4 cut(s) 149, 257, 571, 609
BstDSI CCRYGG 1 cut(s) 793
BstF5I GGATG 4 cut(s) 394, 510, 628, 838
BstFNI CGCG 1 cut(s) 951
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 1 cut(s) 738
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 735
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 2 cut(s) 341, 712
BstSCI CCNGG 2 cut(s) 18, 381
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 1 cut(s) 951
BstV1I GCAGC 1 cut(s) 422
BstV2I GAAGAC 2 cut(s) 147, 776
BstX2I RGATCY 1 cut(s) 735
BstYI RGATCY 1 cut(s) 735
Bsu15I ATCGAT 1 cut(s) 666
BsuRI GGCC 2 cut(s) 757, 907
BsuTUI ATCGAT 1 cut(s) 666
BtgI CCRYGG 1 cut(s) 793
BtsCI GGATG 4 cut(s) 394, 510, 628, 838
BtsIMutI CAGTG 1 cut(s) 971
Cac8I GCNNGC 1 cut(s) 868
CciI TCATGA 1 cut(s) 937
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 1 cut(s) 905
ClaI ATCGAT 1 cut(s) 666
CseI GACGC 1 cut(s) 957
CsiI ACCWGGT 1 cut(s) 381
CviAII CATG 8 cut(s) 286, 338, 372, 577, 614, 709, 794, 938
DdeI CTNAG 4 cut(s) 149, 257, 571, 609
DpnI GATC 1 cut(s) 737
DpnII GATC 1 cut(s) 735
EaeI YGGCCR 1 cut(s) 755
Eco130I CCWWGG 2 cut(s) 452, 793
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 452, 793
ErhI CCWWGG 2 cut(s) 452, 793
FaeI CATG 8 cut(s) 289, 341, 375, 580, 617, 712, 797, 941
FatI CATG 8 cut(s) 285, 337, 371, 576, 613, 708, 793, 937
FauNDI CATATG 1 cut(s) 925
Fnu4HI GCNGC 2 cut(s) 411, 758
FokI GGATG 4 cut(s) 401, 517, 635, 825
Fsp4HI GCNGC 2 cut(s) 411, 758
FspBI CTAG 3 cut(s) 141, 273, 342
GlaI GCGC 1 cut(s) 537
GluI GCNGC 2 cut(s) 411, 758
HaeIII GGCC 2 cut(s) 757, 907
HapII CCGG 1 cut(s) 19
HgaI GACGC 1 cut(s) 957
HhaI GCGC 1 cut(s) 538
Hin1II CATG 8 cut(s) 289, 341, 375, 580, 617, 712, 797, 941
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HindIII AAGCTT 1 cut(s) 966
HinfI GANTC 1 cut(s) 425
HpaII CCGG 1 cut(s) 19
HphI GGTGA 2 cut(s) 116, 434
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 5 cut(s) 123, 495, 636, 703, 735
Hpy188III TCNNGA 2 cut(s) 356, 938
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 5 cut(s) 37, 224, 424, 613, 698
HpyCH4III ACNGT 1 cut(s) 975
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 3 cut(s) 164, 679, 923
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 4 cut(s) 149, 257, 571, 609
HpySE526I ACGT 1 cut(s) 781
Hsp92II CATG 8 cut(s) 289, 341, 375, 580, 617, 712, 797, 941
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 1 cut(s) 735
Lsp1109I GCAGC 1 cut(s) 422
MabI ACCWGGT 1 cut(s) 381
MaeI CTAG 3 cut(s) 141, 273, 342
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 1 cut(s) 959
MalI GATC 1 cut(s) 737
MboI GATC 1 cut(s) 735
MboII GAAGA 4 cut(s) 147, 150, 371, 776
MflI RGATCY 1 cut(s) 735
MhlI GDGCHC 2 cut(s) 225, 681
MluCI AATT 3 cut(s) 290, 330, 683
MmeI TCCRAC 1 cut(s) 866
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 3 cut(s) 9, 600, 747
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 2 cut(s) 20, 383
Mva1269I GAATGC 2 cut(s) 204, 465
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 951
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 1 cut(s) 20
NcoI CCATGG 1 cut(s) 793
NdeI CATATG 1 cut(s) 925
NdeII GATC 1 cut(s) 735
NlaIII CATG 8 cut(s) 289, 341, 375, 580, 617, 712, 797, 941
NlaIV GGNNCC 3 cut(s) 567, 737, 906
NmuCI GTSAC 1 cut(s) 959
NspI RCATGY 2 cut(s) 341, 712
NspV TTCGAA 1 cut(s) 428
PagI TCATGA 1 cut(s) 937
PctI GAATGC 2 cut(s) 204, 465
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 2 cut(s) 412, 759
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 3 cut(s) 567, 737, 906
PspPI GGNCC 1 cut(s) 905
PsuI RGATCY 1 cut(s) 735
SaqAI TTAA 3 cut(s) 9, 600, 747
SatI GCNGC 2 cut(s) 411, 758
Sau3AI GATC 1 cut(s) 735
Sau96I GGNCC 1 cut(s) 905
ScrFI CCNGG 2 cut(s) 20, 383
SduI GDGCHC 2 cut(s) 225, 681
SexAI ACCWGGT 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 428
SmlI CTYRAG 2 cut(s) 8, 824
SmoI CTYRAG 2 cut(s) 8, 824
Sse9I AATT 3 cut(s) 290, 330, 683
SsiI CCGC 3 cut(s) 237, 758, 951
SspMI CTAG 3 cut(s) 141, 273, 342
StyD4I CCNGG 2 cut(s) 18, 381
StyI CCWWGG 2 cut(s) 452, 793
TaaI ACNGT 1 cut(s) 975
TaiI ACGT 1 cut(s) 784
TaqI TCGA 3 cut(s) 99, 428, 666
TasI AATT 3 cut(s) 290, 330, 683
TauI GCSGC 1 cut(s) 760
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 9, 600, 747
Tru9I TTAA 3 cut(s) 9, 600, 747
TscAI CASTG 1 cut(s) 978
TseFI GTSAC 1 cut(s) 959
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 959
TspDTI ATGAA 3 cut(s) 360, 652, 954
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 978
Vha464I CTTAAG 1 cut(s) 8
VneI GTGCAC 1 cut(s) 677
XapI RAATTY 2 cut(s) 330, 683
XceI RCATGY 2 cut(s) 341, 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 3 cut(s) 141, 273, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.