Rw7G030900

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000280
Physical Location & Seq
Forward (+)
43909168 .. 43911990
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030900.1

Sequence Viewer

Length: 2823 bp
ATGGAGCAAGACGAAAGGGAGATATTTGGGAATTGTCACACAAGTGCTGGAAATGGAAGTGGGCCTCAGCAAGAGTCAGCTATAGAGAAGTTGAAGAGAAAGTATAGGGAGCAAAACGAAAGAGAGATATTTGGGAATTGTCATACAAGTGCTGGAAATGGAAGTGGGCCTCAGCAAGAGTCAGCTGAAATATGTGAGGATGGAGGTGCCTTATGGGACATTTTCCGGATCCAGGATGTTCCGCAGCTGAAGAAATACATCCACAAGCACGTCAATGAATTTATGGATGTTCTCTGTAATCCTTTGCAGCATGTTACTCATGCTATACACGATCAGACTGTCTATCTGACTGTGGAACACAAGAGGAAGCTCAAGGAGGAATTCGGTATCGAGCCGTGGACATTTGTCCAAAAACTTGGAGATGCTGTTTTCATTCCTGCAGGTTGTCCTCATCAGGTGAGGAACTTGAAGTCTTGTATCAAAGTTGCACTGGAGTTTGTTTCCCCTGAGAATGTGGGTGAGTGCTTTCGTTTGACGGAAGAGTTTCGCACACTTCCAACAAACCACAGAGCCCATGAGGACAAGCTGGAGGTGAAGAAAATGATTGTGCATGCTGTTTGTGAAGCTATGAAGGAGATTCCTGGTGAGAATGTGACAAAGTGGGCATGGCCTGTGAAGGCAAAGAGGGCAAGGGTTCGCTTGGACAAGTTGAGACGTTGCCATCAGTGTCATATGAATGTTATGGGAAGAGTGGTGCAGTGCACAAGGTGTCGGGAGAGAGGTACGGGAAGGAGGACAAGGTATTGTATCCCTTGTATACAGAGATGGTATCCCAACACATCAGAGGAAGCCATTGCTAAGGCTTGTCCTTTATGCTGCGGCAACTGCAACTGCACAGCCTGTCTTCGCTTGGATGTGCCTGTCAGGTGTTTGCAGAATCTAGAGCCAAAAATCGACAAGGGTACCAAGCTGGAGCACTGTAAGTATTTGGTTCATCAGCTGCTTCCCTATTTGAAGATGATTAGGGATGAGCAGGTGAGTGAGATGGTGGTGGAAGCCAAGAGGCAGGGCTTACGTGACCTTTCGGAGCTCAAGGTGGAGAAGGCAAAAAGCGGTGATGGAGTGCGTATGTACTGCAACAGCTGCAGCACTTCGGTTTTTGATTTTCATAGAACTTGTCCCGGATGTGAGTATGATCTGTGCCTCGGCTGCTGCCGGGAGATTCGAGATGGCAAGTGGAAGAAGAGAGCTCAAGCGTCCACATTTGAGTGGAAATGGAGTGCAAGTGAAGATGGAAGCATTCTCTGCCCCTCAACACACATGAAAGGTTGTGGTAAGCACAATTTAGAATTGAGATGCCTTTTTCCTCAGAATCATGTCATGGAATTGGTAGAGAAAGCAGGAGAAATAGATGCAAGTTACAATTTTTTGCCTGATCGTAGTGAAACATGTGCATATAAGTGTTCATGTGTTAAACCTGTGGATGATGCCGTTAGCTTAAGTAGTAGCAGCTGCTGTAAGTTAAGGAAAGCAGCTTCTAGAGTTGCTTCTGATAGTAACTACTTGTTCTGTCCAAGGGTTGGACAAATCCAAGCTAAGGATTTTGAGCATTTTCAGTGGCATTGGAAGAGGGGTGAGCCTGTGATCGTTAGCAATGCGCTTGAAAATGGATCAGGTTTAAGCTGGGAACCATATGTCATGTGGCAGGCATTTAGAAAGACAAATAATATCAACCATGCTAGTGAATCGACAGTCCATGCCATTGATTGCTGGGATTGGTGTTTTATAGAAATAAACATCCACCATTTCTTTTGTGGATATTCCAAAGGACGGTCTTATAAGACAGGATGGCCTCAGAATCTCAAGCTCAATGACTTCCCATCATCTACTGAGTTTCACAATCGTCTTCCCCGGCATGGTAGGGAATTTTTATGTTGTCTGCCTTTCAAGGAGTATACTCACCCCAACAAGGGAACTCTGAACCTTGCTATCGACTTGCCACCTATCTCAGTAAAGCCAGAAATGGGTCCAAAAGCATATATTGCCTATGGTTTTGCACAAGAGCTTGGACGGGGAGATTCTGTGACCAAGCTTCACTGCAATATGTCTGATGCGGTTAATATTCTGACACATACAGCTGAAGTGGCCCTTACAACTGGGCAACTTGTAACTGTAGAGAAGTTGAAGAAAAAGCACAGGGAGCAAGACAAAAGAGAGATATTTGGGAATTGTCACTCAAGTGCTGGAAATGGAAGTGGGTCTCAGGAAGAATTAGCTGATGTATGTGAGGATGGAGGTGCCTTATGGGACATTTTCCGGACTCAGGATGTTCCGCAGCTGGAGAAATACATCCACAATCACGTCAATGAATTTAAGCATGTGTTCTGTAATCCTTTGCAGCATGTTACTCATGCTATACATGATCAGACTGTTTATCTCACTGTGGAGCACAAGAGGAAGCTAAAGGAGGAATTCGGTATCGAGCCTTGGACATTTGTCCAAAAGCTTGGAGATGCTGTTTTCATTCCTGCAGGTTGTCCTCATCAGGTGAGGAACTTGAAGTCTTGTGTCAAAGTTGCACTGGACTTTGTTTCCCCTGAGAATGTGGGTGAGTGCTTTCGTTTGACGGAAGAGTTTCGCACACTTCCGACATACCACAGAGCCCATGAGGACAAGCTGGAGGTGAAGAAAATGATTGTGCATGCTGTTTGTGAAGCTGTAAAGGAGATTTCTGGTGAGAATGTGATGACAGAGGATGGGAAGTCTAGGGGAGGCGCAAGGGAATTAAGGCAAGGTGTAAGGCGCAAGTCTTACAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

940

Amino Acids

107.32

Weight (kDa)

8.25

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 71 - 166 4.5e-13 JmjC domain, hydroxylase
JmjC PF02373 767 - 863 3.4e-13 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1839
AarI CACCTGC 1 cut(s) 1024
Acc36I ACCTGC 3 cut(s) 431, 1024, 2522
Acc65I GGTACC 1 cut(s) 962
AccB1I GGYRCC 3 cut(s) 206, 962, 2297
AccB7I CCANNNNNTGG 1 cut(s) 1580
AccI GTMKAC 2 cut(s) 817, 1955
AccIII TCCGGA 2 cut(s) 225, 2316
AciI CCGC 5 cut(s) 242, 879, 1113, 2114, 2333
AclWI GGATC 3 cut(s) 223, 236, 1678
AcsI RAATTY 5 cut(s) 278, 380, 1925, 2369, 2471
AcuI CTGAAG 2 cut(s) 269, 2160
AdeI CACNNNGTG 1 cut(s) 768
AfaI GTAC 3 cut(s) 784, 964, 1133
AfiI CCNNNNNNNGG 9 cut(s) 232, 1580, 1597, 1830, 1916, 1969, 1970, 2024, 2323
AflII CTTAAG 1 cut(s) 1498
AflIII ACRYGT 1 cut(s) 1448
AgsI TTSAA 7 cut(s) 94, 469, 1015, 1664, 1948, 2185, 2560
AjiI CACGTC 2 cut(s) 271, 2362
AjnI CCWGG 2 cut(s) 231, 640
AleI CACNNNNGTG 2 cut(s) 42, 2238
Alw21I GWGCWC 5 cut(s) 764, 978, 1092, 1252, 2451
Alw26I GTCTC 2 cut(s) 706, 2265
Alw44I GTGCAC 1 cut(s) 760
AlwI GGATC 3 cut(s) 223, 236, 1678
AlwNI CAGNNNCTG 1 cut(s) 1515
Aor13HI TCCGGA 2 cut(s) 225, 2316
AoxI GGCC 5 cut(s) 62, 167, 668, 1850, 2145
ApaLI GTGCAC 1 cut(s) 760
ApoI RAATTY 5 cut(s) 278, 380, 1925, 2369, 2471
Asp700I GAANNNNTTC 2 cut(s) 543, 2634
Asp718I GGTACC 1 cut(s) 962
AspLEI GCGC 3 cut(s) 1660, 2777, 2805
AspS9I GGNCC 4 cut(s) 62, 167, 2027, 2146
AsuC2I CCSGG 3 cut(s) 1182, 1217, 1912
AvaII GGWCC 1 cut(s) 2027
BaeGI GKGCMC 1 cut(s) 764
BaeI ACNNNNGTAYC 2 cut(s) 946, 979
BamHI GGATCC 1 cut(s) 228
BanI GGYRCC 3 cut(s) 206, 962, 2297
BanII GRGCYC 4 cut(s) 574, 1092, 1252, 2665
BbsI GAAGAC 2 cut(s) 896, 1898
Bbv12I GWGCWC 5 cut(s) 764, 978, 1092, 1252, 2451
BbvCI CCTCAGC 2 cut(s) 66, 171
BceAI ACGGC 2 cut(s) 379, 1475
BciT130I CCWGG 2 cut(s) 233, 642
BciVI GTATCC 2 cut(s) 818, 840
BclI TGATCA 1 cut(s) 2422
BcnI CCSGG 3 cut(s) 1182, 1217, 1912
BcoDI GTCTC 2 cut(s) 706, 2265
BfaI CTAG 4 cut(s) 941, 1539, 1740, 2766
BfmI CTRYAG 5 cut(s) 81, 438, 1144, 2172, 2529
BfrI CTTAAG 1 cut(s) 1498
BfuAI ACCTGC 3 cut(s) 431, 1024, 2522
BfuI GTATCC 2 cut(s) 818, 840
Bme1390I CCNGG 5 cut(s) 233, 642, 1182, 1217, 1912
Bme18I GGWCC 1 cut(s) 2027
BmgBI CACGTC 2 cut(s) 271, 2362
BmgT120I GGNCC 4 cut(s) 62, 167, 2027, 2146
BmiI GGNNCC 6 cut(s) 208, 230, 964, 1689, 2028, 2299
BmrFI CCNGG 5 cut(s) 233, 642, 1182, 1217, 1912
BmrI ACTGGG 1 cut(s) 2166
BmsI GCATC 6 cut(s) 412, 1346, 1402, 1477, 2101, 2503
BmuI ACTGGG 1 cut(s) 2166
BoxI GACNNNNGTC 2 cut(s) 404, 2495
BpiI GAAGAC 2 cut(s) 896, 1898
BpmI CTGGAG 5 cut(s) 512, 608, 992, 2360, 2699
Bpu10I CCTNAGC 4 cut(s) 66, 171, 858, 1596
BpuEI CTTGAG 5 cut(s) 356, 1076, 1236, 1847, 2221
BpuMI CCSGG 3 cut(s) 1182, 1217, 1912
BsaAI YACGTR 1 cut(s) 1076
BsaI GGTCTC 1 cut(s) 2265
BsaJI CCNNGG 5 cut(s) 395, 1204, 1574, 1910, 2486
BsaWI WCCGGW 2 cut(s) 225, 2316
BsaXI ACNNNNNCTCC 8 cut(s) 411, 441, 1270, 1300, 2067, 2097, 2502, 2532
Bsc4I CCNNNNNNNGG 9 cut(s) 232, 1580, 1597, 1830, 1916, 1969, 1970, 2024, 2323
Bse1I ACTGG 3 cut(s) 495, 2161, 2586
Bse3DI GCAATG 2 cut(s) 852, 1660
BseAI TCCGGA 2 cut(s) 225, 2316
BseBI CCWGG 2 cut(s) 233, 642
BseDI CCNNGG 5 cut(s) 395, 1204, 1574, 1910, 2486
BseLI CCNNNNNNNGG 9 cut(s) 232, 1580, 1597, 1830, 1916, 1969, 1970, 2024, 2323
BseMI GCAATG 2 cut(s) 852, 1660
BseNI ACTGG 3 cut(s) 495, 2161, 2586
BseSI GKGCMC 1 cut(s) 764
BseYI CCCAGC 2 cut(s) 1683, 1770
BsgI GTGCAG 2 cut(s) 776, 877
BshFI GGCC 5 cut(s) 64, 169, 670, 1852, 2147
BshNI GGYRCC 3 cut(s) 206, 962, 2297
BsiHKAI GWGCWC 5 cut(s) 764, 978, 1092, 1252, 2451
BsiSI CCGG 5 cut(s) 226, 1182, 1216, 1912, 2317
BslFI GGGAC 3 cut(s) 230, 1164, 2321
BslI CCNNNNNNNGG 9 cut(s) 232, 1580, 1597, 1830, 1916, 1969, 1970, 2024, 2323
BsmAI GTCTC 2 cut(s) 706, 2265
BsmBI CGTCTC 1 cut(s) 706
BsmFI GGGAC 3 cut(s) 230, 1164, 2321
BsmI GAATGC 1 cut(s) 1299
BsnI GGCC 5 cut(s) 64, 169, 670, 1852, 2147
Bso31I GGTCTC 1 cut(s) 2265
Bsp1286I GDGCHC 7 cut(s) 574, 764, 978, 1092, 1252, 2451, 2665
Bsp13I TCCGGA 2 cut(s) 225, 2316
Bsp143I GATC 7 cut(s) 228, 331, 1195, 1435, 1644, 1670, 2422
BspACI CCGC 5 cut(s) 242, 879, 1113, 2114, 2333
BspANI GGCC 5 cut(s) 64, 169, 670, 1852, 2147
BspEI TCCGGA 2 cut(s) 225, 2316
BspLI GGNNCC 6 cut(s) 208, 230, 964, 1689, 2028, 2299
BspMAI CTGCAG 3 cut(s) 442, 1148, 2533
BspMI ACCTGC 3 cut(s) 431, 1024, 2522
BspPI GGATC 3 cut(s) 223, 236, 1678
BspT107I GGYRCC 3 cut(s) 206, 962, 2297
BspTI CTTAAG 1 cut(s) 1498
BspTNI GGTCTC 1 cut(s) 2265
BsrDI GCAATG 2 cut(s) 852, 1660
BsrI ACTGG 3 cut(s) 495, 2161, 2586
BssECI CCNNGG 5 cut(s) 395, 1204, 1574, 1910, 2486
BssMI GATC 7 cut(s) 228, 331, 1195, 1435, 1644, 1670, 2422
BssNAI GTATAC 2 cut(s) 818, 1956
BssT1I CCWWGG 2 cut(s) 1574, 2486
Bst1107I GTATAC 2 cut(s) 818, 1956
Bst2UI CCWGG 2 cut(s) 233, 642
Bst4CI ACNGT 8 cut(s) 340, 352, 980, 1753, 1833, 2173, 2431, 2443
Bst6I CTCTTC 6 cut(s) 89, 534, 742, 1238, 1622, 2625
BstAFI CTTAAG 1 cut(s) 1498
BstAPI GCANNNNNTGC 3 cut(s) 1143, 1305, 2042
BstBAI YACGTR 1 cut(s) 1076
BstC8I GCNNGC 3 cut(s) 612, 1707, 2703
BstDSI CCRYGG 1 cut(s) 395
BstHHI GCGC 3 cut(s) 1660, 2777, 2805
BstKTI GATC 7 cut(s) 231, 334, 1198, 1438, 1647, 1673, 2425
BstMAI GTCTC 2 cut(s) 706, 2265
BstMBI GATC 7 cut(s) 228, 331, 1195, 1435, 1644, 1670, 2422
BstMWI GCNNNNNNNGC 8 cut(s) 686, 885, 1143, 1209, 1305, 2042, 2144, 2200
BstNI CCWGG 2 cut(s) 233, 642
BstNSI RCATGY 6 cut(s) 314, 614, 1452, 2381, 2405, 2705
BstPAI GACNNNNGTC 2 cut(s) 404, 2495
BstSCI CCNGG 5 cut(s) 231, 640, 1180, 1215, 1910
BstSFI CTRYAG 5 cut(s) 81, 438, 1144, 2172, 2529
BstSLI GKGCMC 1 cut(s) 764
BstV2I GAAGAC 2 cut(s) 896, 1898
BstX2I RGATCY 1 cut(s) 228
BstXI CCANNNNNNTGG 2 cut(s) 416, 2507
BstYI RGATCY 1 cut(s) 228
BstZ17I GTATAC 2 cut(s) 818, 1956
BsuI GTATCC 2 cut(s) 818, 840
BsuRI GGCC 5 cut(s) 64, 169, 670, 1852, 2147
BtgI CCRYGG 1 cut(s) 395
BtrI CACGTC 2 cut(s) 271, 2362
BtsI GCAGTG 2 cut(s) 764, 2095
BtsIMutI CAGTG 8 cut(s) 488, 731, 764, 976, 1622, 2095, 2439, 2579
BveI ACCTGC 3 cut(s) 431, 1024, 2522
Cac8I GCNNGC 3 cut(s) 612, 1707, 2703
CaiI CAGNNNCTG 1 cut(s) 1515
CfoI GCGC 3 cut(s) 1660, 2777, 2805
Cfr13I GGNCC 4 cut(s) 62, 167, 2027, 2146
CseI GACGC 1 cut(s) 1245
Csp6I GTAC 3 cut(s) 783, 963, 1132
CviQI GTAC 3 cut(s) 783, 963, 1132
DpnI GATC 7 cut(s) 230, 333, 1197, 1437, 1646, 1672, 2424
DpnII GATC 7 cut(s) 228, 331, 1195, 1435, 1644, 1670, 2422
DraIII CACNNNGTG 1 cut(s) 768
Eam1104I CTCTTC 6 cut(s) 89, 534, 742, 1238, 1622, 2625
EarI CTCTTC 6 cut(s) 89, 534, 742, 1238, 1622, 2625
Ecl136II GAGCTC 2 cut(s) 1090, 1250
Eco130I CCWWGG 2 cut(s) 1574, 2486
Eco24I GRGCYC 4 cut(s) 574, 1092, 1252, 2665
Eco31I GGTCTC 1 cut(s) 2265
Eco47I GGWCC 1 cut(s) 2027
Eco53kI GAGCTC 2 cut(s) 1090, 1250
Eco57I CTGAAG 2 cut(s) 269, 2160
EcoICRI GAGCTC 2 cut(s) 1090, 1250
EcoRI GAATTC 2 cut(s) 380, 2471
EcoRII CCWGG 2 cut(s) 231, 640
EcoT14I CCWWGG 2 cut(s) 1574, 2486
EcoT38I GRGCYC 4 cut(s) 574, 1092, 1252, 2665
ErhI CCWWGG 2 cut(s) 1574, 2486
Esp3I CGTCTC 1 cut(s) 706
FalI AAGNNNNNCTT 2 cut(s) 2133, 2165
FaqI GGGAC 3 cut(s) 230, 1164, 2321
FauNDI CATATG 2 cut(s) 732, 1693
FbaI TGATCA 1 cut(s) 2422
FblI GTMKAC 2 cut(s) 817, 1955
FriOI GRGCYC 4 cut(s) 574, 1092, 1252, 2665
FspBI CTAG 4 cut(s) 941, 1539, 1740, 2766
GlaI GCGC 3 cut(s) 1659, 2776, 2804
GsaI CCCAGC 2 cut(s) 1687, 1774
GsuI CTGGAG 5 cut(s) 512, 608, 992, 2360, 2699
HaeIII GGCC 5 cut(s) 64, 169, 670, 1852, 2147
HapII CCGG 5 cut(s) 226, 1182, 1216, 1912, 2317
HgaI GACGC 1 cut(s) 1245
HhaI GCGC 3 cut(s) 1660, 2777, 2805
Hin6I GCGC 3 cut(s) 1658, 2775, 2803
HinP1I GCGC 3 cut(s) 1658, 2775, 2803
HindIII AAGCTT 2 cut(s) 2090, 2504
HpaII CCGG 5 cut(s) 226, 1182, 1216, 1912, 2317
Hpy166II GTNNAC 5 cut(s) 399, 762, 818, 1260, 1956
Hpy188III TCNNGA 8 cut(s) 226, 773, 941, 1226, 1539, 2264, 2317, 2324
Hpy8I GTNNAC 5 cut(s) 399, 762, 818, 1260, 1956
HpyAV CCTTC 4 cut(s) 625, 670, 783, 1096
HpyCH4III ACNGT 8 cut(s) 340, 352, 980, 1753, 1833, 2173, 2431, 2443
HpyCH4IV ACGT 4 cut(s) 270, 715, 1075, 2361
HpyF10VI GCNNNNNNNGC 8 cut(s) 686, 885, 1143, 1209, 1305, 2042, 2144, 2200
HpySE526I ACGT 4 cut(s) 270, 715, 1075, 2361
HspAI GCGC 3 cut(s) 1658, 2775, 2803
Kpn2I TCCGGA 2 cut(s) 225, 2316
KpnI GGTACC 1 cut(s) 966
Ksp22I TGATCA 1 cut(s) 2422
Kzo9I GATC 7 cut(s) 228, 331, 1195, 1435, 1644, 1670, 2422
LmnI GCTCC 6 cut(s) 4, 109, 973, 1087, 2200, 2446
LweI GCATC 6 cut(s) 412, 1346, 1402, 1477, 2101, 2503
MaeI CTAG 4 cut(s) 941, 1539, 1740, 2766
MaeII ACGT 4 cut(s) 270, 715, 1075, 2361
MalI GATC 7 cut(s) 230, 333, 1197, 1437, 1646, 1672, 2424
MboI GATC 7 cut(s) 228, 331, 1195, 1435, 1644, 1670, 2422
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 7 cut(s) 574, 764, 978, 1092, 1252, 2451, 2665
MlyI GAGTC 3 cut(s) 83, 188, 2314
MmeI TCCRAC 3 cut(s) 581, 1561, 2672
MroI TCCGGA 2 cut(s) 225, 2316
MroXI GAANNNNTTC 2 cut(s) 543, 2634
MseI TTAA 7 cut(s) 1473, 1499, 1523, 1679, 2118, 2373, 2786
MslI CAYNNNNRTG 9 cut(s) 42, 147, 273, 735, 1267, 1459, 1740, 2238, 2364
MspA1I CMGCKG 7 cut(s) 185, 247, 1000, 1143, 1512, 2138, 2338
MspCI CTTAAG 1 cut(s) 1498
MspI CCGG 5 cut(s) 226, 1182, 1216, 1912, 2317
MspR9I CCNGG 5 cut(s) 233, 642, 1182, 1217, 1912
Mva1269I GAATGC 1 cut(s) 1299
MvaI CCWGG 2 cut(s) 233, 642
MwoI GCNNNNNNNGC 8 cut(s) 686, 885, 1143, 1209, 1305, 2042, 2144, 2200
NciI CCSGG 3 cut(s) 1182, 1217, 1912
NdeI CATATG 2 cut(s) 732, 1693
NdeII GATC 7 cut(s) 228, 331, 1195, 1435, 1644, 1670, 2422
NlaIV GGNNCC 6 cut(s) 208, 230, 964, 1689, 2028, 2299
NmeAIII GCCGAG 1 cut(s) 1185
NmuCI GTSAC 5 cut(s) 35, 652, 1076, 2083, 2231
NspI RCATGY 6 cut(s) 314, 614, 1452, 2381, 2405, 2705
OliI CACNNNNGTG 2 cut(s) 42, 2238
PaeI GCATGC 2 cut(s) 614, 2705
PaqCI CACCTGC 1 cut(s) 1024
PciI ACATGT 1 cut(s) 1448
PctI GAATGC 1 cut(s) 1299
PdmI GAANNNNTTC 2 cut(s) 543, 2634
PfeI GAWTC 7 cut(s) 637, 937, 1222, 1372, 1745, 1858, 2078
PflMI CCANNNNNTGG 1 cut(s) 1580
PfoI TCCNGGA 2 cut(s) 231, 1180
PleI GAGTC 3 cut(s) 82, 187, 2314
PpsI GAGTC 3 cut(s) 82, 187, 2314
Ppu21I YACGTR 1 cut(s) 1076
PscI ACATGT 1 cut(s) 1448
PshAI GACNNNNGTC 2 cut(s) 404, 2495
PsiI TTATAA 1 cut(s) 1839
Psp124BI GAGCTC 2 cut(s) 1092, 1252
Psp6I CCWGG 2 cut(s) 231, 640
PspFI CCCAGC 2 cut(s) 1683, 1770
PspGI CCWGG 2 cut(s) 231, 640
PspN4I GGNNCC 6 cut(s) 208, 230, 964, 1689, 2028, 2299
PspPI GGNCC 4 cut(s) 62, 167, 2027, 2146
PstI CTGCAG 3 cut(s) 442, 1148, 2533
PstNI CAGNNNCTG 1 cut(s) 1515
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 7 cut(s) 185, 247, 1000, 1143, 1512, 2138, 2338
RsaI GTAC 3 cut(s) 784, 964, 1133
RsaNI GTAC 3 cut(s) 783, 963, 1132
RseI CAYNNNNRTG 9 cut(s) 42, 147, 273, 735, 1267, 1459, 1740, 2238, 2364
SacI GAGCTC 2 cut(s) 1092, 1252
SaqAI TTAA 7 cut(s) 1473, 1499, 1523, 1679, 2118, 2373, 2786
Sau3AI GATC 7 cut(s) 228, 331, 1195, 1435, 1644, 1670, 2422
Sau96I GGNCC 4 cut(s) 62, 167, 2027, 2146
SbfI CCTGCAGG 2 cut(s) 442, 2533
SchI GAGTC 3 cut(s) 83, 188, 2314
ScrFI CCNGG 5 cut(s) 233, 642, 1182, 1217, 1912
SdaI CCTGCAGG 2 cut(s) 442, 2533
SduI GDGCHC 7 cut(s) 574, 764, 978, 1092, 1252, 2451, 2665
SfaNI GCATC 6 cut(s) 412, 1346, 1402, 1477, 2101, 2503
SfcI CTRYAG 5 cut(s) 81, 438, 1144, 2172, 2529
SinI GGWCC 1 cut(s) 2027
SmiMI CAYNNNNRTG 9 cut(s) 42, 147, 273, 735, 1267, 1459, 1740, 2238, 2364
SmlI CTYRAG 6 cut(s) 371, 1091, 1251, 1498, 1862, 2236
SmoI CTYRAG 6 cut(s) 371, 1091, 1251, 1498, 1862, 2236
SphI GCATGC 2 cut(s) 614, 2705
Sse8387I CCTGCAGG 2 cut(s) 442, 2533
SsiI CCGC 5 cut(s) 242, 879, 1113, 2114, 2333
SspI AATATT 1 cut(s) 2122
SspMI CTAG 4 cut(s) 941, 1539, 1740, 2766
SstI GAGCTC 2 cut(s) 1092, 1252
StyD4I CCNGG 5 cut(s) 231, 640, 1180, 1215, 1910
StyI CCWWGG 2 cut(s) 1574, 2486
TaaI ACNGT 8 cut(s) 340, 352, 980, 1753, 1833, 2173, 2431, 2443
TaiI ACGT 4 cut(s) 273, 718, 1078, 2364
TaqI TCGA 6 cut(s) 390, 954, 1225, 1748, 1992, 2481
TatI WGTACW 1 cut(s) 1131
TauI GCSGC 1 cut(s) 882
TfiI GAWTC 7 cut(s) 637, 937, 1222, 1372, 1745, 1858, 2078
Tru1I TTAA 7 cut(s) 1473, 1499, 1523, 1679, 2118, 2373, 2786
Tru9I TTAA 7 cut(s) 1473, 1499, 1523, 1679, 2118, 2373, 2786
TscAI CASTG 8 cut(s) 495, 731, 764, 983, 1622, 2102, 2446, 2586
TseFI GTSAC 5 cut(s) 35, 652, 1076, 2083, 2231
Tsp45I GTSAC 5 cut(s) 35, 652, 1076, 2083, 2231
TspGWI ACGGA 2 cut(s) 551, 2642
TspRI CASTG 8 cut(s) 495, 731, 764, 983, 1622, 2102, 2446, 2586
Van91I CCANNNNNTGG 1 cut(s) 1580
Vha464I CTTAAG 1 cut(s) 1498
VneI GTGCAC 1 cut(s) 760
VpaK11BI GGWCC 1 cut(s) 2027
XapI RAATTY 5 cut(s) 278, 380, 1925, 2369, 2471
XbaI TCTAGA 2 cut(s) 940, 1538
XceI RCATGY 6 cut(s) 314, 614, 1452, 2381, 2405, 2705
XcmI CCANNNNNNNNNTGG 2 cut(s) 1698, 1811
XmiI GTMKAC 2 cut(s) 817, 1955
XmnI GAANNNNTTC 2 cut(s) 543, 2634
XspI CTAG 4 cut(s) 941, 1539, 1740, 2766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.