Rmu_co8440445.1_g000001

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8440445.1
OG0000280
Physical Location & Seq
Reverse (-)
2 .. 1396
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8440445.1_g000001.1.cds

Sequence Viewer

Length: 779 bp
atggtgatggaggctagaagacaagggaaatctctttcggagctaaagatccaaaggtcggacagctctcctgatgatcgtgtatactgcgacaactgcaatacatctattattgatttccacagaagctgtcctatatgttcatatgacctttgtcttatctgctgccgggagattcgagatggaaaccagcaaggaagtgcagaagaagtgattggggagtatatcaatcaaggtctagactatttacatggtggaaagggcaacttaataaaaaagccttctgaaactaaactcaagtgtcctgtaaggtcaacatctaagtggaaagtaagcaaagatcgaagtattttttgcccctcaaaagacatggacggctgtggttgtagtgttctagaactgagatgcatattttctgaaaaccacatcatagagttggtagaaaaagcagaagaaattgcagaaactaaaaaactgatgtatgcagctggaccttctgcacagaagttttcatggttcaactctgcaggtggtgctgactcaagaggcaatgaattgacgaaagcagcatctcgagaggattcggaggacaactacttgtacagtccaagggctataaatatccaacatgaagactttaagcattttcgctgtcattggatccagggtgagcctgtgattgtggggaatgtgcttgaaactgcaacaggtttgagctgggaaccatttgtcatgtggcgtgcttgtcgtcagatgagaaataccgggcatgatagaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

259

Amino Acids

29.34

Weight (kDa)

6.4

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 518
AccI GTMKAC 1 cut(s) 84
AclWI GGATC 3 cut(s) 43, 655, 668
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 520, 698
AjnI CCWGG 1 cut(s) 663
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 5 cut(s) 43, 66, 129, 488, 717
AluI AGCT 5 cut(s) 43, 66, 129, 488, 717
AlwI GGATC 3 cut(s) 43, 655, 668
AlwNI CAGNNNCTG 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 573
ApeKI GCWGC 3 cut(s) 165, 485, 566
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 2 cut(s) 170, 766
AsuHPI GGTGA 2 cut(s) 16, 680
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 491
BamHI GGATCC 1 cut(s) 660
BbsI GAAGAC 2 cut(s) 25, 639
BbvI GCAGC 3 cut(s) 152, 497, 578
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 665
BcnI CCSGG 2 cut(s) 170, 766
BfaI CTAG 3 cut(s) 15, 239, 395
BfmI CTRYAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 518
BisI GCNGC 3 cut(s) 166, 486, 567
BlsI GCNGC 3 cut(s) 167, 487, 568
Bme1390I CCNGG 3 cut(s) 170, 665, 766
Bme18I GGWCC 1 cut(s) 491
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 2 cut(s) 662, 723
BmrFI CCNGG 3 cut(s) 170, 665, 766
BmsI GCATC 2 cut(s) 395, 578
BoxI GACNNNNGTC 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 25, 639
BpuEI CTTGAG 2 cut(s) 281, 526
BpuMI CCSGG 2 cut(s) 170, 766
BsaJI CCNNGG 2 cut(s) 608, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 556
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 2 cut(s) 608, 664
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 152, 497, 578
BseYI CCCAGC 1 cut(s) 717
BsgI GTGCAG 2 cut(s) 222, 483
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 2 cut(s) 169, 765
BslI CCNNNNNNNGG 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 573
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 4 cut(s) 48, 76, 340, 660
BspCNI CTCAG 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 662, 723
BspMAI CTGCAG 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 518
BspPI GGATC 3 cut(s) 43, 655, 668
BsrDI GCAATG 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 600
BssECI CCNNGG 2 cut(s) 608, 664
BssMI GATC 4 cut(s) 48, 76, 340, 660
BssNAI GTATAC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 608
Bst1107I GTATAC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 1 cut(s) 605
BstAPI GCANNNNNTGC 1 cut(s) 533
BstAUI TGTACA 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 2 cut(s) 321, 401
BstKTI GATC 4 cut(s) 51, 79, 343, 663
BstMBI GATC 4 cut(s) 48, 76, 340, 660
BstMWI GCNNNNNNNGC 2 cut(s) 96, 533
BstNI CCWGG 1 cut(s) 665
BstPAI GACNNNNGTC 1 cut(s) 153
BstSCI CCNGG 3 cut(s) 168, 663, 764
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 3 cut(s) 152, 497, 578
BstV2I GAAGAC 2 cut(s) 25, 639
BstX2I RGATCY 2 cut(s) 48, 660
BstYI RGATCY 2 cut(s) 48, 660
BstZ17I GTATAC 1 cut(s) 85
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 741
CaiI CAGNNNCTG 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 491
Csp6I GTAC 1 cut(s) 601
CviAII CATG 6 cut(s) 251, 370, 513, 629, 733, 770
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 2 cut(s) 321, 401
DpnI GATC 4 cut(s) 50, 78, 342, 662
DpnII GATC 4 cut(s) 48, 76, 340, 660
Eco130I CCWWGG 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 573
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 6 cut(s) 254, 373, 516, 632, 736, 773
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 6 cut(s) 250, 369, 512, 628, 732, 769
FauNDI CATATG 1 cut(s) 145
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 166, 486, 567
Fsp4HI GCNGC 3 cut(s) 166, 486, 567
FspBI CTAG 3 cut(s) 15, 239, 395
GluI GCNGC 3 cut(s) 166, 486, 567
GsaI CCCAGC 1 cut(s) 721
HapII CCGG 2 cut(s) 169, 765
Hin1II CATG 6 cut(s) 254, 373, 516, 632, 736, 773
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 3 cut(s) 175, 539, 581
HpaII CCGG 2 cut(s) 169, 765
HphI GGTGA 2 cut(s) 16, 680
Hpy166II GTNNAC 2 cut(s) 85, 315
Hpy188I TCNGA 6 cut(s) 40, 61, 286, 418, 586, 753
Hpy188III TCNNGA 7 cut(s) 71, 179, 239, 395, 543, 573, 575
Hpy8I GTNNAC 2 cut(s) 85, 315
HpyAV CCTTC 2 cut(s) 291, 504
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4V TGCA 8 cut(s) 99, 203, 408, 461, 485, 500, 527, 704
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 533
HpyF3I CTNAG 2 cut(s) 321, 401
Hsp92II CATG 6 cut(s) 254, 373, 516, 632, 736, 773
Kzo9I GATC 4 cut(s) 48, 76, 340, 660
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 3 cut(s) 152, 497, 578
LweI GCATC 2 cut(s) 395, 578
MaeI CTAG 3 cut(s) 15, 239, 395
MalI GATC 4 cut(s) 50, 78, 342, 662
MboI GATC 4 cut(s) 48, 76, 340, 660
MboII GAAGA 4 cut(s) 30, 218, 464, 644
MflI RGATCY 2 cut(s) 48, 660
MluCI AATT 2 cut(s) 456, 554
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 2 cut(s) 39, 649
MnlI CCTC 5 cut(s) 4, 370, 539, 571, 580
Mph1103I ATGCAT 1 cut(s) 410
MseI TTAA 2 cut(s) 269, 639
MslI CAYNNNNRTG 1 cut(s) 322
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 2 cut(s) 169, 765
MspR9I CCNGG 3 cut(s) 170, 665, 766
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 2 cut(s) 96, 533
NciI CCSGG 2 cut(s) 170, 766
NdeI CATATG 1 cut(s) 145
NdeII GATC 4 cut(s) 48, 76, 340, 660
NlaIII CATG 6 cut(s) 254, 373, 516, 632, 736, 773
NlaIV GGNNCC 2 cut(s) 662, 723
NsiI ATGCAT 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 573
PaqCI CACCTGC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 175, 581
PkrI GCNGC 3 cut(s) 167, 487, 568
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PshAI GACNNNNGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 2 cut(s) 662, 723
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 529
PstNI CAGNNNCTG 1 cut(s) 129
PsuI RGATCY 2 cut(s) 48, 660
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 1 cut(s) 322
SaqAI TTAA 2 cut(s) 269, 639
SatI GCNGC 3 cut(s) 166, 486, 567
Sau3AI GATC 4 cut(s) 48, 76, 340, 660
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 3 cut(s) 170, 665, 766
SfaNI GCATC 2 cut(s) 395, 578
SfcI CTRYAG 1 cut(s) 525
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 491
SlaI CTCGAG 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 322
SmlI CTYRAG 3 cut(s) 296, 541, 573
SmoI CTYRAG 3 cut(s) 296, 541, 573
Sse9I AATT 2 cut(s) 456, 554
SspMI CTAG 3 cut(s) 15, 239, 395
StyD4I CCNGG 3 cut(s) 168, 663, 764
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 605
TaqI TCGA 3 cut(s) 178, 343, 574
TasI AATT 2 cut(s) 456, 554
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 2 cut(s) 175, 581
Tru1I TTAA 2 cut(s) 269, 639
Tru9I TTAA 2 cut(s) 269, 639
TseI GCWGC 3 cut(s) 165, 485, 566
TspDTI ATGAA 4 cut(s) 132, 501, 567, 645
VpaK11BI GGWCC 1 cut(s) 491
XbaI TCTAGA 2 cut(s) 238, 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 3 cut(s) 15, 239, 395
Zsp2I ATGCAT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.