Rh1DG195800

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000280
Physical Location & Seq
Reverse (-)
38670251 .. 38678952
8702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG195800.1

Sequence Viewer

Length: 3432 bp
ATGGGGAGAGGTAGAAAGCGGTCGAGGAAAACCGCAGAGTTTGGGGGTGAGGGCATTTTGGGAAATCAAAATTATAGGACCAAACGGGAGGGAGGTGAAGGGAGTTGGGATTCTCCGAGCTTGAGGAAGAGGAAGAGAGAAGGTGAAGCTGGAGGGTCATGTTCTAAGAAGAAATGTACTAAGGGCTCAAATTGGGTTAATTGGAAGTCTTCAATGTGCCATCAGTGTCAGAGGAATGACAGGGCCAGAGTTGTCAACTGCACAAGTTGTAAGCGGAAGCGATTTTGTGTATCTTGCATTCATAATTGGTATCCCCAGATGTCAGAGGAGGCTATTGCCGACGCTTGTCCTGTATGCCTTGGAAATTGCAATTGCAAAGCGTGCTTGCGTTTAGATGAAACTAATCATAATTTGAATAGCAAGCTTGCATTGCATGTTAGCAAAGATGAAGAAGTGGAGCACTCTAAGTATTTGCTTGAAGCATTGCTTCCATTCTTGAAAAGACTTAATGATGAACAAGTTATAGAGATGGTGATGGAGGCTAGAAGACAAGGGAAATCTCTTTCGGAGCTAAAGATCCGAAGGTCGGACAGCTCTCCTGATGATCGTGTATACTGCGACAACTGCAATACATCTATTATTGATTTCCACAGAAGCTGTCCTATATGTTCATATGACCTTTGTCTTATCTGCTGCCGGGAGATTCGAGATGGAAACCTGCAAGGAAGTGCTGAAGAAGTGATTGGGGAGTATATCAATCGAGGTCTAGACTATTTACATGGTGGAAAGGGCAACTTAATCAAAGGGCCTTCTGAAACTAAACTCAAGTGTCCTGTAAGGTCAACATCTAAGTGGAAAGTAAGCAAGGATCGAAGTATTTTTTGCCCCTCAAAAGACATGGACGGCTGTGGTTGTAGTGTTCTAGAACTGAGATGCATATTATCTGAAAACCACATCAGGGAGTTGGTAGAAAAAGCAGAAGAAATTGCAGAAACTGAAAAACTGATGTATGCAGCTGGACCTTCTGCACAGAAGTTTTCATGGTTCAACTCTGCTGGTGGTGCTGACTCAAGAAGCAATGAATTGACGAAAGCAGCTTCTCGAGAGGATTCGGAGGACAACTACTTGTACAGTCCAAGGGCTAAAAATATCCAACATGAAGACTTTAAGCATTTTCGCTGTCATTGGATCCGGGGTGAGCCTGTGATTGTGGGGAATGTGCTTGAAACTGCAACAGGTTTGAGCTGGGAACCATTTGTCATGTGGCGTGCTTGTCGTCAGATGAGAAATACCGGGCATGATAGACATGTGGAATTTAAGGCCATCGATTGCTTGGATTGGTGCGAGCTAGATATCGGTATCCACCAATTTTTTACTGGATATTTGGAGGGCCAGTTTGATGGGAAAATGTGGCCTCGTATTCTGAAACTCAACGATCGGTCCCTTGATGATTATTTGGAGAAGCGCCTTCCTCGTCATTGTGCTGAGTTTATTTGTTGCTTGCCATTTAAGGAATATACCCATCCTCGCAGTGGCCTACTGAACCTTGCTGTAAAATTGCCTATGGAGTGTGTAAAGCCAGACATGGGGCCAAAAATGGATATTGCTTATGGTGTGTCCCAGGAGCTTGGACGTGGAGATTCAGTAACTAAGCTTCACTGTGATTCATGTGATGTGGTGAATGTTTTGACACATACTGCTGAAGTGACGATTACTGCTGAGCAACTTTGTACTATAGAAGAGTTGAAAAAAGAGCACATTGAACAAGACCGAAGGGAAATGTTTGAAAATTATGAGGCTGTGGATGACAATGTTGATCATAAGGAGTCTGGCAGTGGGTCTTGTGTCAGGACTGCAAAGGGTAAACAATGTTGTACTCAAGTTAAGAATCAAAACAGGGTTGCAACTTTTCAAGAAAAGACTAAAGCGGCTGTTCAAACTGATAGTTGGAATGGTGGAAATTTTTCGAAGGAATCCATGTCTGCAAAGAATGCAGAGGGAGGTGCTTTATGGGACATTTTTCGACGACAGGATGTTCCTAAGCTGCAGGAATATCTATGGAAACACTACAAGGAATTCAGGCACACCTACTGTTGTCCATTGCAGCAGGTTACTCATCCCATACATGATCAGACTTTTTATCTGACATTAGAGCACAAGAGGAAGCTGAAGGAAGAATATGGAATTGAACCATGGACATTTATCCAGAAACTTGGAGATGCTGTCTTTATTCCTGCAGGATGTCCACACCAAGTTAGAAACTTGAAGTCGTGCATTAAAGTTTCTGTTGAATTTGTCTCCCCTGAAAATGTTGGTGAGTGCTTACGTCTGACAGATGAGTTCCGCACACTTCCACGAAAGCATATAGCTAAAGAGGACAAATTGGAGGTGAAGAAAATGATTGTTCATGCTGTACATGAGGCTGTGGAGATTTTGGATCAGAATGTGAGGTTATGTAGCGCTAAAAATTTCAGGGGAGAGAAGCCTTCACAGCCCCCTGTTAATATATGTAAGGGTAACATTGCAAACAAATCGAGGGAGAAAGCAGCTAGGGGACGACCACTAGAAGGAAGGGCAGAATTGAAAGAGGTTCAAATTCTTGAGGAGCAGGCTTCACAATTATCACAACCTATACAGCCCACTATTGATGTTGGTAGATTTGGAAGTACACGGAGAGAGGAAAAAGATGGAGGGCAACCACAAGAAGCAAGTAGAGTAGATGAAGAGGTCCAAATTCTTAAGGGGCAGCCTTCACAGTCAGCACAACATGTACAGCCCACTGCTTATGTTGATGGCAAGCATACAATGAGAAAGGAAACTGAGGGAGGGGTACTGCAAGAAACACATGGAGAAGTTGAAGACGTCCAAATTCTTGAGAAGCAGCCTTGGCAATCATCACAAACTGTACAAGCAGCTCTTCATGTTGGTAGCATTGAACATGCATCTAGAGAGGAAAAAGCTGGATGGCGACCACAAACTTGTGGAGAAGATGAAGAAGTCCAAATTCTTGAGGAGCAGCATTGGCAATCATCACAATCTGTACAAGCAACTCTTCACATTGGTAGCATTGCACATGCACTGAGAGAGGAAAAAGTGGGAGAACGACAGCATGAAGGAAAGGGAGAACAGGAAGAGGTCCGAAATCTTGGTGAGAAGCCTTCAAAGTTATCACAACCTGAACCTGTCCAGCCCACTGTTGATGTTGATAAAGCGGTGCAGCATCTGGATGAGCTCGTGGAGCTCCTTCGACATTTTGAACAGGGGAGGATGCCGATGGGAGGGAGAGATGGAAGAATCAGTTCTCAATTCCAGCTTTTATGCTCGGAGTTCTTGACTTTATCTTTGCATCTTGGTTATTCACCTAATGATACAAAACCTCACATTACACCATCTGCTCAGCAACTACATGATCCTCCAGTTGTAGATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

1143

Amino Acids

129.79

Weight (kDa)

6.54

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 664 - 765 3.5e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2865
Acc36I ACCTGC 2 cut(s) 726, 2098
AccI GTMKAC 1 cut(s) 612
AciI CCGC 6 cut(s) 19, 33, 274, 1928, 2344, 3212
AclWI GGATC 6 cut(s) 571, 876, 1183, 1196, 2445, 3404
AcsI RAATTY 9 cut(s) 1313, 1960, 2075, 2291, 2467, 2595, 2733, 2868, 3003
AcuI CTGAAG 3 cut(s) 753, 1722, 2189
AcyI GRCGYC 1 cut(s) 2862
AfeI AGCGCT 1 cut(s) 2461
AfiI CCNNNNNNNGG 6 cut(s) 586, 958, 1532, 1586, 2567, 3278
AflII CTTAAG 1 cut(s) 2738
AflIII ACRYGT 2 cut(s) 1306, 2767
AjiI CACGTC 1 cut(s) 1634
AjnI CCWGG 1 cut(s) 1620
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
Alw21I GWGCWC 5 cut(s) 462, 1758, 2157, 3234, 3243
Alw26I GTCTC 1 cut(s) 2302
AlwI GGATC 6 cut(s) 571, 876, 1183, 1196, 2445, 3404
AlwNI CAGNNNCTG 3 cut(s) 657, 995, 3223
Ama87I CYCGRG 1 cut(s) 1101
Aor51HI AGCGCT 1 cut(s) 2461
AoxI GGCC 7 cut(s) 243, 806, 1320, 1390, 1412, 1534, 1589
ApoI RAATTY 9 cut(s) 1313, 1960, 2075, 2291, 2467, 2595, 2733, 2868, 3003
ArsI GACNNNNNNTTYG 2 cut(s) 3325, 3357
Asp700I GAANNNNTTC 2 cut(s) 1963, 3298
AspLEI GCGC 2 cut(s) 1467, 2462
AspS9I GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
AsuC2I CCSGG 3 cut(s) 698, 1193, 1294
AsuII TTCGAA 1 cut(s) 1967
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
BamHI GGATCC 1 cut(s) 1188
BanII GRGCYC 3 cut(s) 188, 3234, 3243
BarI GAAGNNNNNNTAC 2 cut(s) 1638, 1670
BauI CACGAG 1 cut(s) 3233
BbsI GAAGAC 4 cut(s) 201, 553, 1167, 2865
Bbv12I GWGCWC 5 cut(s) 462, 1758, 2157, 3234, 3243
BceAI ACGGC 1 cut(s) 919
BcgI CGANNNNNNTGC 2 cut(s) 2514, 2548
BciT130I CCWGG 1 cut(s) 1622
BciVI GTATCC 2 cut(s) 321, 1370
BclI TGATCA 2 cut(s) 1816, 2128
BcnI CCSGG 3 cut(s) 698, 1193, 1294
BcoDI GTCTC 1 cut(s) 2302
BfaI CTAG 7 cut(s) 543, 767, 923, 1349, 2550, 2564, 2946
BfmI CTRYAG 3 cut(s) 1734, 2045, 2235
BfoI RGCGCY 2 cut(s) 1468, 2463
BfrI CTTAAG 1 cut(s) 2738
BfuAI ACCTGC 2 cut(s) 726, 2098
BfuI GTATCC 2 cut(s) 321, 1370
BglII AGATCT 1 cut(s) 3424
BlpI GCTNAGC 2 cut(s) 1719, 3396
Bme1390I CCNGG 4 cut(s) 698, 1193, 1294, 1622
Bme18I GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
BmeT110I CYCGRG 1 cut(s) 1101
BmgBI CACGTC 1 cut(s) 1634
BmgT120I GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
BmiI GGNNCC 4 cut(s) 1190, 1251, 1442, 1590
BmrFI CCNGG 4 cut(s) 698, 1193, 1294, 1622
BmsI GCATC 6 cut(s) 923, 2209, 2951, 3229, 3258, 3355
BoxI GACNNNNGTC 2 cut(s) 345, 681
BpiI GAAGAC 4 cut(s) 201, 553, 1167, 2865
BpmI CTGGAG 2 cut(s) 171, 3399
Bpu10I CCTNAGC 1 cut(s) 2040
Bpu1102I GCTNAGC 2 cut(s) 1719, 3396
Bpu14I TTCGAA 1 cut(s) 1967
BpuEI CTTGAG 7 cut(s) 142, 809, 1054, 1863, 2621, 2894, 3029
BpuMI CCSGG 3 cut(s) 698, 1193, 1294
Bsa29I ATCGAT 1 cut(s) 1326
BsaHI GRCGYC 1 cut(s) 2862
BsaJI CCNNGG 6 cut(s) 358, 1136, 1192, 1620, 2192, 2885
BsaXI ACNNNNNCTCC 6 cut(s) 1379, 1409, 1629, 1659, 2208, 2238
Bsc4I CCNNNNNNNGG 6 cut(s) 586, 958, 1532, 1586, 2567, 3278
Bse1I ACTGG 3 cut(s) 1381, 1393, 3416
Bse3DI GCAATG 6 cut(s) 428, 482, 1084, 2099, 2520, 3066
BseBI CCWGG 1 cut(s) 1622
BseCI ATCGAT 1 cut(s) 1326
BseDI CCNNGG 6 cut(s) 358, 1136, 1192, 1620, 2192, 2885
BseGI GGATG 8 cut(s) 1522, 1810, 2038, 2116, 2246, 2969, 3232, 3273
BseLI CCNNNNNNNGG 6 cut(s) 586, 958, 1532, 1586, 2567, 3278
BseMI GCAATG 6 cut(s) 428, 482, 1084, 2099, 2520, 3066
BseMII CTCAG 6 cut(s) 920, 1476, 1710, 2811, 3071, 3410
BseNI ACTGG 3 cut(s) 1381, 1393, 3416
BseRI GAGGAG 3 cut(s) 341, 2618, 3026
BseYI CCCAGC 1 cut(s) 1245
BsgI GTGCAG 3 cut(s) 244, 1011, 3236
Bsh1285I CGRYCG 2 cut(s) 23, 1438
BshFI GGCC 7 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591
BshVI ATCGAT 1 cut(s) 1326
BsiEI CGRYCG 2 cut(s) 23, 1438
BsiHKAI GWGCWC 5 cut(s) 462, 1758, 2157, 3234, 3243
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 3 cut(s) 697, 1192, 1293
BslFI GGGAC 4 cut(s) 1426, 1603, 2027, 2568
BslI CCNNNNNNNGG 6 cut(s) 586, 958, 1532, 1586, 2567, 3278
BsmAI GTCTC 1 cut(s) 2302
BsmFI GGGAC 4 cut(s) 1426, 1603, 2027, 2568
BsmI GAATGC 2 cut(s) 297, 1996
BsnI GGCC 7 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591
BsoBI CYCGRG 1 cut(s) 1101
Bsp119I TTCGAA 1 cut(s) 1967
Bsp1286I GDGCHC 6 cut(s) 188, 462, 1758, 2157, 3234, 3243
Bsp1407I TGTACA 5 cut(s) 1128, 2413, 2770, 2905, 3040
Bsp1720I GCTNAGC 2 cut(s) 1719, 3396
Bsp19I CCATGG 1 cut(s) 2192
BspACI CCGC 6 cut(s) 19, 33, 274, 1928, 2344, 3212
BspANI GGCC 7 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591
BspCNI CTCAG 6 cut(s) 921, 1477, 1711, 2812, 3072, 3409
BspDI ATCGAT 1 cut(s) 1326
BspLI GGNNCC 4 cut(s) 1190, 1251, 1442, 1590
BspMAI CTGCAG 2 cut(s) 2049, 2239
BspMI ACCTGC 2 cut(s) 726, 2098
BspPI GGATC 6 cut(s) 571, 876, 1183, 1196, 2445, 3404
BspQI GCTCTTC 1 cut(s) 2922
BspT104I TTCGAA 1 cut(s) 1967
BspTI CTTAAG 1 cut(s) 2738
BsrDI GCAATG 6 cut(s) 428, 482, 1084, 2099, 2520, 3066
BsrGI TGTACA 5 cut(s) 1128, 2413, 2770, 2905, 3040
BsrI ACTGG 3 cut(s) 1381, 1393, 3416
BssECI CCNNGG 6 cut(s) 358, 1136, 1192, 1620, 2192, 2885
BssNAI GTATAC 1 cut(s) 613
BssNI GRCGYC 1 cut(s) 2862
BssSI CACGAG 1 cut(s) 3233
BssT1I CCWWGG 4 cut(s) 358, 1136, 2192, 2885
Bst1107I GTATAC 1 cut(s) 613
Bst2BI CACGAG 1 cut(s) 3233
Bst2UI CCWGG 1 cut(s) 1622
Bst4CI ACNGT 6 cut(s) 1133, 1661, 2093, 2757, 2905, 3196
Bst6I CTCTTC 7 cut(s) 122, 128, 1734, 2718, 2922, 3057, 3126
BstACI GRCGYC 1 cut(s) 2862
BstAFI CTTAAG 1 cut(s) 2738
BstAPI GCANNNNNTGC 2 cut(s) 381, 1991
BstAUI TGTACA 5 cut(s) 1128, 2413, 2770, 2905, 3040
BstBI TTCGAA 1 cut(s) 1967
BstC8I GCNNGC 9 cut(s) 382, 386, 422, 426, 1269, 1346, 1502, 2610, 2798
BstDSI CCRYGG 1 cut(s) 2192
BstF5I GGATG 8 cut(s) 1522, 1810, 2038, 2116, 2246, 2969, 3232, 3273
BstH2I RGCGCY 2 cut(s) 1468, 2463
BstHHI GCGC 2 cut(s) 1467, 2462
BstMAI GTCTC 1 cut(s) 2302
BstMCI CGRYCG 2 cut(s) 23, 1438
BstMWI GCNNNNNNNGC 9 cut(s) 381, 430, 624, 1061, 1991, 2491, 2887, 3022, 3238
BstNI CCWGG 1 cut(s) 1622
BstNSI RCATGY 5 cut(s) 437, 1310, 2771, 2942, 3077
BstPAI GACNNNNGTC 2 cut(s) 345, 681
BstSCI CCNGG 4 cut(s) 696, 1191, 1292, 1620
BstSFI CTRYAG 3 cut(s) 1734, 2045, 2235
BstV2I GAAGAC 4 cut(s) 201, 553, 1167, 2865
BstX2I RGATCY 3 cut(s) 576, 1188, 3424
BstXI CCANNNNNNTGG 3 cut(s) 1400, 1628, 2213
BstYI RGATCY 3 cut(s) 576, 1188, 3424
BstZ17I GTATAC 1 cut(s) 613
Bsu15I ATCGAT 1 cut(s) 1326
BsuI GTATCC 2 cut(s) 321, 1370
BsuRI GGCC 7 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591
BsuTUI ATCGAT 1 cut(s) 1326
BtgI CCRYGG 1 cut(s) 2192
BtrI CACGTC 1 cut(s) 1634
BtsCI GGATG 8 cut(s) 1522, 1810, 2038, 2116, 2246, 2969, 3232, 3273
BtsI GCAGTG 3 cut(s) 1537, 1840, 2778
BtsIMutI CAGTG 7 cut(s) 230, 1537, 1657, 1840, 2778, 3077, 3192
BveI ACCTGC 2 cut(s) 726, 2098
Cac8I GCNNGC 9 cut(s) 382, 386, 422, 426, 1269, 1346, 1502, 2610, 2798
CaiI CAGNNNCTG 3 cut(s) 657, 995, 3223
CfoI GCGC 2 cut(s) 1467, 2462
Cfr13I GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
ClaI ATCGAT 1 cut(s) 1326
CseI GACGC 1 cut(s) 350
Eam1104I CTCTTC 7 cut(s) 122, 128, 1734, 2718, 2922, 3057, 3126
EarI CTCTTC 7 cut(s) 122, 128, 1734, 2718, 2922, 3057, 3126
Ecl136II GAGCTC 2 cut(s) 3232, 3241
Eco130I CCWWGG 4 cut(s) 358, 1136, 2192, 2885
Eco24I GRGCYC 3 cut(s) 188, 3234, 3243
Eco32I GATATC 1 cut(s) 1354
Eco47I GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
Eco47III AGCGCT 1 cut(s) 2461
Eco53kI GAGCTC 2 cut(s) 3232, 3241
Eco57I CTGAAG 3 cut(s) 753, 1722, 2189
Eco88I CYCGRG 1 cut(s) 1101
EcoICRI GAGCTC 2 cut(s) 3232, 3241
EcoO109I RGGNCCY 1 cut(s) 806
EcoRI GAATTC 1 cut(s) 2075
EcoRII CCWGG 1 cut(s) 1620
EcoRV GATATC 1 cut(s) 1354
EcoT14I CCWWGG 4 cut(s) 358, 1136, 2192, 2885
EcoT22I ATGCAT 2 cut(s) 938, 2944
EcoT38I GRGCYC 3 cut(s) 188, 3234, 3243
ErhI CCWWGG 4 cut(s) 358, 1136, 2192, 2885
FalI AAGNNNNNCTT 8 cut(s) 471, 503, 779, 811, 2901, 2933, 3036, 3068
FaqI GGGAC 4 cut(s) 1426, 1603, 2027, 2568
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 2 cut(s) 1816, 2128
FblI GTMKAC 1 cut(s) 612
FokI GGATG 8 cut(s) 1509, 1817, 2045, 2103, 2253, 2976, 3239, 3280
FriOI GRGCYC 3 cut(s) 188, 3234, 3243
FspBI CTAG 7 cut(s) 543, 767, 923, 1349, 2550, 2564, 2946
GlaI GCGC 2 cut(s) 1466, 2461
GsaI CCCAGC 1 cut(s) 1249
GsuI CTGGAG 2 cut(s) 171, 3399
HaeII RGCGCY 2 cut(s) 1468, 2463
HaeIII GGCC 7 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591
HapII CCGG 3 cut(s) 697, 1192, 1293
HgaI GACGC 1 cut(s) 350
HhaI GCGC 2 cut(s) 1467, 2462
Hin1I GRCGYC 1 cut(s) 2862
Hin6I GCGC 2 cut(s) 1465, 2460
HinP1I GCGC 2 cut(s) 1465, 2460
HincII GTYRAC 2 cut(s) 256, 843
HindII GTYRAC 2 cut(s) 256, 843
HindIII AAGCTT 2 cut(s) 422, 1652
HpaII CCGG 3 cut(s) 697, 1192, 1293
Hpy166II GTNNAC 6 cut(s) 256, 613, 843, 1865, 2246, 2669
Hpy8I GTNNAC 6 cut(s) 256, 613, 843, 1865, 2246, 2669
Hpy99I CGWCG 2 cut(s) 344, 2028
HpyCH4III ACNGT 6 cut(s) 1133, 1661, 2093, 2757, 2905, 3196
HpyCH4IV ACGT 3 cut(s) 1633, 2326, 2862
HpyF10VI GCNNNNNNNGC 9 cut(s) 381, 430, 624, 1061, 1991, 2491, 2887, 3022, 3238
HpySE526I ACGT 3 cut(s) 1633, 2326, 2862
Hsp92I GRCGYC 1 cut(s) 2862
HspAI GCGC 2 cut(s) 1465, 2460
Ksp22I TGATCA 2 cut(s) 1816, 2128
LguI GCTCTTC 1 cut(s) 2922
LmnI GCTCC 7 cut(s) 457, 568, 1624, 2605, 3013, 3238, 3246
LweI GCATC 6 cut(s) 923, 2209, 2951, 3229, 3258, 3355
MaeI CTAG 7 cut(s) 543, 767, 923, 1349, 2550, 2564, 2946
MaeII ACGT 3 cut(s) 1633, 2326, 2862
MaeIII GTNAC 4 cut(s) 1645, 1705, 2110, 2516
MfeI CAATTG 1 cut(s) 370
MflI RGATCY 3 cut(s) 576, 1188, 3424
MhlI GDGCHC 6 cut(s) 188, 462, 1758, 2157, 3234, 3243
MlyI GAGTC 2 cut(s) 1061, 1835
MmeI TCCRAC 3 cut(s) 567, 1177, 1928
Mph1103I ATGCAT 2 cut(s) 938, 2944
MroXI GAANNNNTTC 2 cut(s) 1963, 3298
MslI CAYNNNNRTG 2 cut(s) 850, 3225
MspA1I CMGCKG 1 cut(s) 1016
MspCI CTTAAG 1 cut(s) 2738
MspI CCGG 3 cut(s) 697, 1192, 1293
MspR9I CCNGG 4 cut(s) 698, 1193, 1294, 1622
MunI CAATTG 1 cut(s) 370
Mva1269I GAATGC 2 cut(s) 297, 1996
MvaI CCWGG 1 cut(s) 1622
MwoI GCNNNNNNNGC 9 cut(s) 381, 430, 624, 1061, 1991, 2491, 2887, 3022, 3238
NciI CCSGG 3 cut(s) 698, 1193, 1294
NcoI CCATGG 1 cut(s) 2192
NdeI CATATG 1 cut(s) 673
NlaIV GGNNCC 4 cut(s) 1190, 1251, 1442, 1590
NmuCI GTSAC 1 cut(s) 1705
NsiI ATGCAT 2 cut(s) 938, 2944
NspI RCATGY 5 cut(s) 437, 1310, 2771, 2942, 3077
NspV TTCGAA 1 cut(s) 1967
PaeR7I CTCGAG 1 cut(s) 1101
PciI ACATGT 2 cut(s) 1306, 2767
PciSI GCTCTTC 1 cut(s) 2922
PctI GAATGC 2 cut(s) 297, 1996
PdmI GAANNNNTTC 2 cut(s) 1963, 3298
PfeI GAWTC 8 cut(s) 110, 703, 1109, 1640, 1664, 1888, 1973, 3294
Ple19I CGATCG 1 cut(s) 1438
PleI GAGTC 2 cut(s) 1061, 1834
PpsI GAGTC 2 cut(s) 1061, 1834
PscI ACATGT 2 cut(s) 1306, 2767
PshAI GACNNNNGTC 2 cut(s) 345, 681
Psp124BI GAGCTC 2 cut(s) 3234, 3243
Psp6I CCWGG 1 cut(s) 1620
PspFI CCCAGC 1 cut(s) 1245
PspGI CCWGG 1 cut(s) 1620
PspN4I GGNNCC 4 cut(s) 1190, 1251, 1442, 1590
PspPI GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
PstI CTGCAG 2 cut(s) 2049, 2239
PstNI CAGNNNCTG 3 cut(s) 657, 995, 3223
PsuI RGATCY 3 cut(s) 576, 1188, 3424
PvuI CGATCG 1 cut(s) 1438
PvuII CAGCTG 1 cut(s) 1016
RseI CAYNNNNRTG 2 cut(s) 850, 3225
SacI GAGCTC 2 cut(s) 3234, 3243
SapI GCTCTTC 1 cut(s) 2922
Sau96I GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
SbfI CCTGCAGG 1 cut(s) 2239
SchI GAGTC 2 cut(s) 1061, 1835
ScrFI CCNGG 4 cut(s) 698, 1193, 1294, 1622
SdaI CCTGCAGG 1 cut(s) 2239
SduI GDGCHC 6 cut(s) 188, 462, 1758, 2157, 3234, 3243
SfaNI GCATC 6 cut(s) 923, 2209, 2951, 3229, 3258, 3355
SfcI CTRYAG 3 cut(s) 1734, 2045, 2235
Sfr274I CTCGAG 1 cut(s) 1101
SfuI TTCGAA 1 cut(s) 1967
SinI GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
SlaI CTCGAG 1 cut(s) 1101
SmiMI CAYNNNNRTG 2 cut(s) 850, 3225
SmlI CTYRAG 9 cut(s) 121, 824, 1069, 1101, 1878, 2600, 2738, 2873, 3008
SmoI CTYRAG 9 cut(s) 121, 824, 1069, 1101, 1878, 2600, 2738, 2873, 3008
Sse8387I CCTGCAGG 1 cut(s) 2239
SsiI CCGC 6 cut(s) 19, 33, 274, 1928, 2344, 3212
SspMI CTAG 7 cut(s) 543, 767, 923, 1349, 2550, 2564, 2946
SstI GAGCTC 2 cut(s) 3234, 3243
StyD4I CCNGG 4 cut(s) 696, 1191, 1292, 1620
StyI CCWWGG 4 cut(s) 358, 1136, 2192, 2885
TaaI ACNGT 6 cut(s) 1133, 1661, 2093, 2757, 2905, 3196
TaiI ACGT 3 cut(s) 1636, 2329, 2865
TaqII GACCGA 2 cut(s) 1428, 1785
TatI WGTACW 9 cut(s) 176, 1128, 1730, 1874, 2413, 2666, 2770, 2905, 3040
TauI GCSGC 1 cut(s) 1931
TfiI GAWTC 8 cut(s) 110, 703, 1109, 1640, 1664, 1888, 1973, 3294
TscAI CASTG 7 cut(s) 230, 1537, 1664, 1840, 2785, 3084, 3199
TseFI GTSAC 1 cut(s) 1705
Tsp45I GTSAC 1 cut(s) 1705
TspGWI ACGGA 1 cut(s) 2686
TspRI CASTG 7 cut(s) 230, 1537, 1664, 1840, 2785, 3084, 3199
Vha464I CTTAAG 1 cut(s) 2738
VpaK11BI GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
XapI RAATTY 9 cut(s) 1313, 1960, 2075, 2291, 2467, 2595, 2733, 2868, 3003
XbaI TCTAGA 3 cut(s) 766, 922, 2945
XceI RCATGY 5 cut(s) 437, 1310, 2771, 2942, 3077
XcmI CCANNNNNNNNNTGG 4 cut(s) 1260, 1330, 1373, 1529
XhoI CTCGAG 1 cut(s) 1101
XmiI GTMKAC 1 cut(s) 612
XmnI GAANNNNTTC 2 cut(s) 1963, 3298
XspI CTAG 7 cut(s) 543, 767, 923, 1349, 2550, 2564, 2946
ZraI GACGTC 1 cut(s) 2863
Zsp2I ATGCAT 2 cut(s) 938, 2944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.