RchiOBHm_Chr3g0461991

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000280
Physical Location & Seq
Forward (+)
9837828 .. 9850944
13117 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42838

Sequence Viewer

Length: 738 bp
ATGGTGTGGTGGCAGACAAAGATAAAGGATATGGGAAGTGGGTTGGTGAGTGAAAGGGATCGTGAGGTTGCTGCTGCAAGTGATGTGATGAACGGAGCTGTTGCTGCTGCAAGTGATGTGATGTCAGATCGTGGGATTGCTGCTGCTGCTGTTGGTTTTGGACGGCGCTGCTGCTGTTGGAACGGCACGGAGCTGTTGCTGCTGCAAGTGATCCACCAACTTGTCCGCCACCATTGTCGGCCATCATTGTTGGCCTCCAGCACTACTCACATCAACATTGTGAACAATGCGCTTGAAAATAGTTCAGGGTTGAGTTGGGAACCCTTAGTCATGTGGAGGGCTTTTCGTCAAGTTAATAATACTAAGCATGAGAAGGATGTGGAAGTTCAGGCCATTGATTGCTTGGATTGGTGTTTCATCGATGTCAATATGCACAAATTTTTTACTGGATATTCTGAAGGCATGTTTGATACAAAAGACTGCCCTCGGATCCTAAAACTTAAAGACTGGCCGCCCTCCACTGATTTTGATAAACGTCTTCCTCGCCATGGCAAGGAGTTTGTGTGTTGCTTGCCTCTCAAGGAATACACTCATCCAACAGGTAGTATTCTAAACCTTGATTGCCACTTGCCCAAAAGAGCTGTCAAACCTGACTTGGGGCCAAAGACATACATTGCATATGGGGGTTGCTCAGGAATTTGGACGCAGAGATTGTGGAGGAGACAGGGTTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

245

Amino Acids

27.72

Weight (kDa)

8.28

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 226, 512
AclWI GGATC 4 cut(s) 66, 205, 484, 497
AcoI YGGCCR 2 cut(s) 239, 509
AcsI RAATTY 2 cut(s) 437, 696
AcuI CTGAAG 1 cut(s) 477
AfiI CCNNNNNNNGG 3 cut(s) 548, 553, 656
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 3 cut(s) 98, 193, 641
AluI AGCT 3 cut(s) 98, 193, 641
Alw26I GTCTC 1 cut(s) 715
AlwI GGATC 4 cut(s) 66, 205, 484, 497
AoxI GGCC 5 cut(s) 239, 252, 390, 509, 659
ApoI RAATTY 2 cut(s) 437, 696
ArsI GACNNNNNNTTYG 2 cut(s) 627, 659
AspLEI GCGC 2 cut(s) 168, 292
AspS9I GGNCC 1 cut(s) 659
AsuHPI GGTGA 1 cut(s) 58
BamHI GGATCC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 530
BccI CCATC 1 cut(s) 250
BceAI ACGGC 2 cut(s) 179, 199
BcoDI GTCTC 1 cut(s) 715
BfoI RGCGCY 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 3 cut(s) 321, 491, 660
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 691
BpuEI CTTGAG 1 cut(s) 563
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 485, 547
BsaXI ACNNNNNCTCC 3 cut(s) 548, 578, 712
Bsc4I CCNNNNNNNGG 3 cut(s) 548, 553, 656
Bse1I ACTGG 2 cut(s) 451, 512
Bse3DI GCAATG 1 cut(s) 672
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 485, 547
BseGI GGATG 2 cut(s) 382, 592
BseLI CCNNNNNNNGG 3 cut(s) 548, 553, 656
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 2 cut(s) 451, 512
BseRI GAGGAG 1 cut(s) 733
BshFI GGCC 5 cut(s) 241, 254, 392, 511, 661
BshVI ATCGAT 1 cut(s) 420
BslI CCNNNNNNNGG 3 cut(s) 548, 553, 656
BsmAI GTCTC 1 cut(s) 715
BsnI GGCC 5 cut(s) 241, 254, 392, 511, 661
Bsp143I GATC 4 cut(s) 58, 127, 210, 489
Bsp19I CCATGG 1 cut(s) 547
BspACI CCGC 2 cut(s) 226, 512
BspANI GGCC 5 cut(s) 241, 254, 392, 511, 661
BspCNI CTCAG 1 cut(s) 704
BspDI ATCGAT 1 cut(s) 420
BspLI GGNNCC 3 cut(s) 321, 491, 660
BspPI GGATC 4 cut(s) 66, 205, 484, 497
BsrDI GCAATG 1 cut(s) 672
BsrI ACTGG 2 cut(s) 451, 512
BssECI CCNNGG 2 cut(s) 485, 547
BssMI GATC 4 cut(s) 58, 127, 210, 489
BssT1I CCWWGG 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 572
BstDEI CTNAG 3 cut(s) 325, 363, 691
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 2 cut(s) 382, 592
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 2 cut(s) 168, 292
BstKTI GATC 4 cut(s) 61, 130, 213, 492
BstMAI GTCTC 1 cut(s) 715
BstMBI GATC 4 cut(s) 58, 127, 210, 489
BstMWI GCNNNNNNNGC 3 cut(s) 104, 146, 199
BstNSI RCATGY 1 cut(s) 466
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 5 cut(s) 241, 254, 392, 511, 661
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 2 cut(s) 382, 592
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 1 cut(s) 572
CfoI GCGC 2 cut(s) 168, 292
Cfr13I GGNCC 1 cut(s) 659
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 1 cut(s) 712
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 4 cut(s) 331, 368, 463, 548
CviJI RGCY 9 cut(s) 98, 193, 241, 254, 341, 392, 511, 641, 661
CviKI_1 RGCY 9 cut(s) 98, 193, 241, 254, 341, 392, 511, 641, 661
DdeI CTNAG 3 cut(s) 325, 363, 691
DpnI GATC 4 cut(s) 60, 129, 212, 491
DpnII GATC 4 cut(s) 58, 127, 210, 489
EaeI YGGCCR 2 cut(s) 239, 509
EciI GGCGGA 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 4 cut(s) 334, 371, 466, 551
FaiI YATR 9 cut(s) 32, 332, 369, 431, 464, 549, 670, 679, 681
FatI CATG 4 cut(s) 330, 367, 462, 547
FauNDI CATATG 1 cut(s) 679
FokI GGATG 2 cut(s) 389, 579
GlaI GCGC 2 cut(s) 167, 291
GsuI CTGGAG 1 cut(s) 241
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 5 cut(s) 241, 254, 392, 511, 661
HgaI GACGC 1 cut(s) 712
HhaI GCGC 2 cut(s) 168, 292
Hin1II CATG 4 cut(s) 334, 371, 466, 551
Hin6I GCGC 2 cut(s) 166, 290
HinP1I GCGC 2 cut(s) 166, 290
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 127, 457, 489
Hpy188III TCNNGA 2 cut(s) 62, 693
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 367, 452
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 5 cut(s) 77, 110, 205, 433, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 146, 199
HpyF3I CTNAG 3 cut(s) 325, 363, 691
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 4 cut(s) 334, 371, 466, 551
HspAI GCGC 2 cut(s) 166, 290
Kzo9I GATC 4 cut(s) 58, 127, 210, 489
LmnI GCTCC 2 cut(s) 95, 190
LpnPI CCDG 9 cut(s) 271, 291, 374, 432, 493, 585, 663, 678, 710
MaeII ACGT 1 cut(s) 535
MalI GATC 4 cut(s) 60, 129, 212, 491
MboI GATC 4 cut(s) 58, 127, 210, 489
MboII GAAGA 1 cut(s) 530
MflI RGATCY 1 cut(s) 489
MluCI AATT 2 cut(s) 437, 696
MmeI TCCRAC 2 cut(s) 158, 620
MnlI CCTC 8 cut(s) 58, 265, 330, 495, 526, 552, 585, 711
MseI TTAA 2 cut(s) 354, 501
MwoI GCNNNNNNNGC 3 cut(s) 104, 146, 199
NcoI CCATGG 1 cut(s) 547
NdeI CATATG 1 cut(s) 679
NdeII GATC 4 cut(s) 58, 127, 210, 489
NlaIII CATG 4 cut(s) 334, 371, 466, 551
NlaIV GGNNCC 3 cut(s) 321, 491, 660
NspI RCATGY 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 321, 491, 660
PspPI GGNCC 1 cut(s) 659
PsuI RGATCY 1 cut(s) 489
SaqAI TTAA 2 cut(s) 354, 501
Sau3AI GATC 4 cut(s) 58, 127, 210, 489
Sau96I GGNCC 1 cut(s) 659
SetI ASST 8 cut(s) 69, 100, 195, 538, 604, 618, 643, 652
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
Sse9I AATT 2 cut(s) 437, 696
SsiI CCGC 2 cut(s) 226, 512
StyI CCWWGG 1 cut(s) 547
TaiI ACGT 1 cut(s) 538
TaqI TCGA 1 cut(s) 420
TasI AATT 2 cut(s) 437, 696
TauI GCSGC 1 cut(s) 514
Tru1I TTAA 2 cut(s) 354, 501
Tru9I TTAA 2 cut(s) 354, 501
TscAI CASTG 1 cut(s) 526
TspDTI ATGAA 2 cut(s) 104, 406
TspGWI ACGGA 2 cut(s) 108, 203
TspRI CASTG 1 cut(s) 526
XapI RAATTY 2 cut(s) 437, 696
XceI RCATGY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.