Rh7BG278000

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000280
Physical Location & Seq
Forward (+)
25836757 .. 25852168
15412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG278000.1

Sequence Viewer

Length: 2922 bp
ATGGCGAGAGGGGGAGGCAGAGGAAGAGGGAGATGGGCAAAGCCGCAAAGGGACCAAGGCTCAGAAACCCATAACCCGAATCAAACTGAAGATGTTGCTGTCAAAGTTGGTGAATATGGTGATGGGGTTGTTCTTTCTGAGATAAAGGCTGTGTCTTTTGGTGGTGTAGAGAAGGGTGAGGACAGTTTGGGAAACGGTCAAAATGAAGAAGTTGCTGTGAGTGTGAAGAAGAAGAAGAAGCCTGGGAGGAAGAGTAAGAAGGGTTTGGTGGGAAATGGTGATGGAGGTCTAAAGGAGGTTGCTTTTGGTGGTGATGAGATTGCTATGATGACTTTGAGGAAGAGGCCTGAACGGAACAAGAGAGTTAGAGTTATGGAGGCAGAGGGAAATGGTGAGAAAGGTGAAGAGAATGGTGCTTCTGTGAACAAGAAAGGTAGGAAAAAGGTGACATTTGCGAAGGAAGAGGGAAAGAAAGGTGTTTTAGAAGTGAATAGAGACAAGAAGCGCGATAGGAAGCGTGCGAAAACTGAGGAGGAAGATGGGAATGAGGTAGGCTATTCGTTTAGGCCTCTGAGGGAGCAGGGACATCTATCAACGGAGGAGCGTAAAAAGAATCTGAAGAACCAAGATTTAGTACTTGACAAAGATGCAAGAGTTGAGCACTCTAAGTACTTAATTCATGCACTGCTTCCATCCTTGAAAAGAATTCATGAAGAACAAGAGAATGAGATGGCGATGGAGGCAAGGACAAAAGGATTATCTAACTTGAAGCTCCAGATACCAAAGTCTGACTGTGCTGCTGATGTTCGCGTGTATTGCAACAACTGCAGAACTTCTATTTTTGATTATCACAGAAGCTGTCCTAAATGTTCATATGACCTCTGCCTCATTTGTTGCCGGGAGATTCGAGAAGGACAATTGCAGCTAGGTGGGGAGGAAGTGACTTTGGAGTATGTTTCTCGGGGCCTACCTTATTTGCATGGTGGAGAGGAAGACAACAAAAAAAGAAAGGGAAAGAGAAATAGGAATGTTGTGGAGCCACCCTCTGAAACTAGTCCCAAAAGTTCTGGAAAGCGAACATTTGAGTGGAAATCATATGAAGATGGAAGCATACTTTGCCCCCCAGAGGACATGGGAGGTTGTGGCAGTGGTAATCTAGAATTGAGATGCATGTTTTCCAAAAATTACATCAAAGAGTTGGTAAAGAAAGCAGAAGAGATAGATGAAGCTTACAAACTTGTGTATTCAAGTAGAACTTCTGCAGAGAGGTGTTCATGTCTCAACTCTGTTGATGATGTCAATTCAAGCATCAATGCATCAAGGAAAGCAGCTTCTCGAGACAATTCTGAGGACAACTATCTGTACTGTGCAAGGGCTGGAGATGTCCAAGTAGAGGATTTAAAGCATTTCCAGTGGCATTGGATCAAGGGTGAGCCTGTTATTGTTAGCAATGCACTTGATACTGCATCAGGTTTAAGCTGGGAACCATTGGTCATGTGGCGCGCTTGTCGTCAGATGCAACATACTAAGCATGGTAAACATTTGGACGTCAAAGCAATAGATTGCCTGGATTGGTGTGAGGGGGATATCAATATCCACCAATTTTTTACTGGATACTCGAAGGGACGGTTTGATCAAGAGAATTGGCCACAGATATTGAAACTGAAAGATTGGCCGCCAACTAATTTATTTGAGGAGCGCCTTCCTCGTCATGGTGCTGAGTTCATTTGTTGTCTGCCTTATAAGGAATATACTCATCCTCGCAATGGTCCTCTAAACCTTTTTGCCAAATTACCTTCAGAATGTGTAAAACCAGACATGGGACCAAAGACATATATTGCTTATGGTTTTTCCCAGGAGCTTGGACGTGGAGATTCTGTAACCAAGCTTCATTGCGATATGTCTGATGCGGTGAATGTTTTGACACATACCACTGAAGTGAACCTTACTCCTGAGCAACTTACTGTCATTGAAAAGTTGAAAAAGAAGCATGCTCAACAAGACCAAAGAGAAATTTTTGGCAATTGTCAGACTGTGGATGATGATGTTGATAGTGGCAAGGCTGGTGGTGATTCTTGTTTCAGTGCTGCTGATGATAAACAACTTCTTAATGAAGTTGATAATAATAGCAGTGGTGTAGCTGTTCCAGAACTGGTTGATCCAATTGTTCAACATGTTGGAGATGCTTCAATGGGATCTCTGTCCGAAAAGAACAAAGAGGCAGAATTAGATCATGATATCGGTAGTGAAATGCCTGCAAGAAATTATGGAAATAAGTTGGAAGAGTCGGATGTCAATGAGGGAGGTGCTTTATGGGACATATTCCGTAGACAGGATGTTCCTAAGCTGCAGGAGTATCTCATGAAGCATTTCAAGGAATTCAGGCACATACACTGTTGTCCATTGCAGCAGGTTATTCATCCCATACATGATCAGACATTTTATCTTACAATGGAGCACAAAAAGAAGCTTAAAGAGGAATATGGAATTGAACCATGGACCTTCATTCAAAACCTTGGAGATGCTGTCTTTATTCCTGCAGGATGTCCGCATCAAGTCAGGAACTTGAAGTCATGCATCAAAGTTGCAATGGACTTTGTCTCACCTGAAAATGTTGGCGAGTGCTTTCACTTGACAGAAGTATTCCGCACACTTCCAGAAGATCATAGGGCTAAAGAGGACAAATTGGAGGTAAAGAAAATGATTGTTCATTCTGTCACTGATGCTCTGGAGGAACTAAATCAGAATGTGAGGTCTAAGGAAGCCACTAATCCACCTCAATCAATCCTCCAGCAATGGCAGCTCCAAACAAGAACTAGTCTGCTTCATACCACTGAATCCCACCACTTGAAGGGCCGCGCGGTGTCTCAGCTCTCATTGCTTGACAGCATTCTGGTAATCATTTTTCGGACTAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

973

Amino Acids

109.95

Weight (kDa)

6.58

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 769 - 866 7.4e-15 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1743
AatII GACGTC 1 cut(s) 1551
Acc36I ACCTGC 1 cut(s) 2401
AccI GTMKAC 1 cut(s) 2329
AccII CGCG 5 cut(s) 507, 810, 1503, 2859, 2861
AciI CCGC 7 cut(s) 44, 1676, 1910, 2549, 2647, 2857, 2861
AclWI GGATC 3 cut(s) 1430, 2153, 2203
AcoI YGGCCR 2 cut(s) 1646, 1673
AcsI RAATTY 3 cut(s) 705, 2013, 2378
AcuI CTGAAG 4 cut(s) 108, 638, 1782, 1956
AcyI GRCGYC 1 cut(s) 1548
AfaI GTAC 3 cut(s) 636, 671, 1364
AfiI CCNNNNNNNGG 7 cut(s) 1126, 1393, 1712, 1766, 1820, 2332, 2851
AflIII ACRYGT 1 cut(s) 2173
AhlI ACTAGT 2 cut(s) 1052, 2816
AjiI CACGTC 1 cut(s) 1868
AjnI CCWGG 3 cut(s) 241, 1566, 1854
AleI CACNNNNGTG 1 cut(s) 1937
Alw21I GWGCWC 2 cut(s) 663, 2460
Alw26I GTCTC 5 cut(s) 489, 1283, 1332, 2605, 2871
AlwI GGATC 3 cut(s) 1430, 2153, 2203
AlwNI CAGNNNCTG 1 cut(s) 858
Ama87I CYCGRG 2 cut(s) 960, 1335
AoxI GGCC 6 cut(s) 344, 566, 964, 1646, 1673, 2854
ApeKI GCWGC 7 cut(s) 797, 922, 1328, 2087, 2347, 2407, 2800
ApoI RAATTY 3 cut(s) 705, 2013, 2378
Asp700I GAANNNNTTC 1 cut(s) 2369
AspLEI GCGC 5 cut(s) 507, 1503, 1505, 1701, 2861
AspS9I GGNCC 6 cut(s) 52, 964, 1769, 1823, 2499, 2854
AsuC2I CCSGG 1 cut(s) 899
AvaI CYCGRG 2 cut(s) 960, 1335
AvaII GGWCC 4 cut(s) 52, 1769, 1823, 2499
BaeI ACNNNNGTAYC 2 cut(s) 770, 803
BalI TGGCCA 1 cut(s) 1648
BarI GAAGNNNNNNTAC 2 cut(s) 1872, 1904
BbsI GAAGAC 1 cut(s) 999
Bbv12I GWGCWC 2 cut(s) 663, 2460
BbvI GCAGC 7 cut(s) 784, 934, 1340, 2074, 2334, 2419, 2812
BccI CCATC 8 cut(s) 27, 116, 275, 533, 700, 724, 730, 1097
BciT130I CCWGG 3 cut(s) 243, 1568, 1856
BciVI GTATCC 1 cut(s) 1607
BclI TGATCA 2 cut(s) 1633, 2431
BcnI CCSGG 1 cut(s) 899
BcoDI GTCTC 5 cut(s) 489, 1283, 1332, 2605, 2871
BcuI ACTAGT 2 cut(s) 1052, 2816
BfaI CTAG 4 cut(s) 926, 1053, 1157, 2817
BfmI CTRYAG 4 cut(s) 826, 1260, 2348, 2538
BfoI RGCGCY 1 cut(s) 1702
BfuAI ACCTGC 1 cut(s) 2401
BfuI GTATCC 1 cut(s) 1607
BmcAI AGTACT 2 cut(s) 636, 671
Bme1390I CCNGG 4 cut(s) 243, 899, 1568, 1856
Bme18I GGWCC 4 cut(s) 52, 1769, 1823, 2499
BmeT110I CYCGRG 2 cut(s) 960, 1335
BmgBI CACGTC 1 cut(s) 1868
BmgT120I GGNCC 6 cut(s) 52, 964, 1769, 1823, 2499, 2854
BmiI GGNNCC 5 cut(s) 53, 965, 1038, 1485, 1824
BmrFI CCNGG 4 cut(s) 243, 899, 1568, 1856
BpiI GAAGAC 1 cut(s) 999
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
BpmI CTGGAG 4 cut(s) 758, 1398, 2750, 2774
Bpu10I CCTNAGC 2 cut(s) 1953, 2343
BpuMI CCSGG 1 cut(s) 899
BsaHI GRCGYC 1 cut(s) 1548
BsaJI CCNNGG 5 cut(s) 55, 242, 1854, 2495, 2515
BsaXI ACNNNNNCTCC 6 cut(s) 238, 268, 1863, 1893, 2511, 2541
Bsc4I CCNNNNNNNGG 7 cut(s) 1126, 1393, 1712, 1766, 1820, 2332, 2851
Bse1I ACTGG 3 cut(s) 1411, 1615, 2157
Bse3DI GCAATG 7 cut(s) 1456, 1771, 1891, 2402, 2595, 2801, 2876
BseBI CCWGG 3 cut(s) 243, 1568, 1856
BseDI CCNNGG 5 cut(s) 55, 242, 1854, 2495, 2515
BseGI GGATG 7 cut(s) 692, 1756, 2044, 2296, 2341, 2419, 2549
BseLI CCNNNNNNNGG 7 cut(s) 1126, 1393, 1712, 1766, 1820, 2332, 2851
BseMI GCAATG 7 cut(s) 1456, 1771, 1891, 2402, 2595, 2801, 2876
BseMII CTCAG 8 cut(s) 75, 129, 519, 563, 1338, 1710, 1944, 2882
BseNI ACTGG 3 cut(s) 1411, 1615, 2157
BsePI GCGCGC 1 cut(s) 1501
BseRI GAGGAG 3 cut(s) 545, 614, 1709
BseXI GCAGC 7 cut(s) 784, 934, 1340, 2074, 2334, 2419, 2812
BseYI CCCAGC 1 cut(s) 1479
Bsh1236I CGCG 5 cut(s) 507, 810, 1503, 2859, 2861
BshFI GGCC 6 cut(s) 346, 568, 966, 1648, 1675, 2856
BsiHKAI GWGCWC 2 cut(s) 663, 2460
BsiHKCI CYCGRG 2 cut(s) 960, 1335
BsiSI CCGG 1 cut(s) 898
BslFI GGGAC 6 cut(s) 65, 597, 1041, 1638, 1836, 2330
BslI CCNNNNNNNGG 7 cut(s) 1126, 1393, 1712, 1766, 1820, 2332, 2851
BsmAI GTCTC 5 cut(s) 489, 1283, 1332, 2605, 2871
BsmFI GGGAC 6 cut(s) 65, 597, 1041, 1638, 1836, 2330
BsmI GAATGC 1 cut(s) 2889
BsnI GGCC 6 cut(s) 346, 568, 966, 1648, 1675, 2856
BsoBI CYCGRG 2 cut(s) 960, 1335
Bsp1286I GDGCHC 2 cut(s) 663, 2460
Bsp143I GATC 7 cut(s) 1422, 1633, 2158, 2195, 2230, 2431, 2662
Bsp19I CCATGG 1 cut(s) 2495
BspACI CCGC 7 cut(s) 44, 1676, 1910, 2549, 2647, 2857, 2861
BspANI GGCC 6 cut(s) 346, 568, 966, 1648, 1675, 2856
BspCNI CTCAG 8 cut(s) 74, 130, 520, 564, 1339, 1711, 1945, 2881
BspFNI CGCG 5 cut(s) 507, 810, 1503, 2859, 2861
BspHI TCATGA 3 cut(s) 709, 2233, 2361
BspLI GGNNCC 5 cut(s) 53, 965, 1038, 1485, 1824
BspMAI CTGCAG 4 cut(s) 830, 1264, 2352, 2542
BspMI ACCTGC 1 cut(s) 2401
BspPI GGATC 3 cut(s) 1430, 2153, 2203
BsrDI GCAATG 7 cut(s) 1456, 1771, 1891, 2402, 2595, 2801, 2876
BsrI ACTGG 3 cut(s) 1411, 1615, 2157
BssECI CCNNGG 5 cut(s) 55, 242, 1854, 2495, 2515
BssHII GCGCGC 1 cut(s) 1501
BssMI GATC 7 cut(s) 1422, 1633, 2158, 2195, 2230, 2431, 2662
BssNI GRCGYC 1 cut(s) 1548
BssT1I CCWWGG 3 cut(s) 55, 2495, 2515
Bst2UI CCWGG 3 cut(s) 243, 1568, 1856
Bst4CI ACNGT 8 cut(s) 185, 197, 794, 1367, 1629, 1966, 2035, 2396
Bst6I CTCTTC 7 cut(s) 19, 245, 335, 399, 456, 1209, 2277
BstACI GRCGYC 1 cut(s) 1548
BstAPI GCANNNNNTGC 2 cut(s) 825, 1116
BstC8I GCNNGC 4 cut(s) 519, 1503, 1992, 2256
BstDSI CCRYGG 1 cut(s) 2495
BstF5I GGATG 7 cut(s) 692, 1756, 2044, 2296, 2341, 2419, 2549
BstFNI CGCG 5 cut(s) 507, 810, 1503, 2859, 2861
BstH2I RGCGCY 1 cut(s) 1702
BstHHI GCGC 5 cut(s) 507, 1503, 1505, 1701, 2861
BstKTI GATC 7 cut(s) 1425, 1636, 2161, 2198, 2233, 2434, 2665
BstMAI GTCTC 5 cut(s) 489, 1283, 1332, 2605, 2871
BstMBI GATC 7 cut(s) 1422, 1633, 2158, 2195, 2230, 2431, 2662
BstMWI GCNNNNNNNGC 6 cut(s) 740, 816, 825, 1116, 2800, 2878
BstNI CCWGG 3 cut(s) 243, 1568, 1856
BstNSI RCATGY 3 cut(s) 1174, 1994, 2177
BstSCI CCNGG 4 cut(s) 241, 897, 1566, 1854
BstSFI CTRYAG 4 cut(s) 826, 1260, 2348, 2538
BstUI CGCG 5 cut(s) 507, 810, 1503, 2859, 2861
BstV1I GCAGC 7 cut(s) 784, 934, 1340, 2074, 2334, 2419, 2812
BstV2I GAAGAC 1 cut(s) 999
BstX2I RGATCY 1 cut(s) 2195
BstXI CCANNNNNNTGG 1 cut(s) 1862
BstYI RGATCY 1 cut(s) 2195
BsuI GTATCC 1 cut(s) 1607
BsuRI GGCC 6 cut(s) 346, 568, 966, 1648, 1675, 2856
BtgI CCRYGG 1 cut(s) 2495
BtgZI GCGATG 1 cut(s) 749
BtrI CACGTC 1 cut(s) 1868
BtsCI GGATG 7 cut(s) 692, 1756, 2044, 2296, 2341, 2419, 2549
BtsI GCAGTG 3 cut(s) 683, 1153, 2137
BtsIMutI CAGTG 9 cut(s) 683, 1153, 1418, 1932, 2089, 2137, 2392, 2718, 2832
BveI ACCTGC 1 cut(s) 2401
Cac8I GCNNGC 4 cut(s) 519, 1503, 1992, 2256
CaiI CAGNNNCTG 1 cut(s) 858
CciI TCATGA 3 cut(s) 709, 2233, 2361
CfoI GCGC 5 cut(s) 507, 1503, 1505, 1701, 2861
Cfr13I GGNCC 6 cut(s) 52, 964, 1769, 1823, 2499, 2854
Csp6I GTAC 3 cut(s) 635, 670, 1363
CspCI CAANNNNNGTGG 4 cut(s) 1638, 1673, 2047, 2082
CviQI GTAC 3 cut(s) 635, 670, 1363
DpnI GATC 7 cut(s) 1424, 1635, 2160, 2197, 2232, 2433, 2664
DpnII GATC 7 cut(s) 1422, 1633, 2158, 2195, 2230, 2431, 2662
DraI TTTAAA 1 cut(s) 1401
EaeI YGGCCR 2 cut(s) 1646, 1673
Eam1104I CTCTTC 7 cut(s) 19, 245, 335, 399, 456, 1209, 2277
EarI CTCTTC 7 cut(s) 19, 245, 335, 399, 456, 1209, 2277
Eco130I CCWWGG 3 cut(s) 55, 2495, 2515
Eco147I AGGCCT 2 cut(s) 346, 568
Eco32I GATATC 2 cut(s) 1588, 2239
Eco47I GGWCC 4 cut(s) 52, 1769, 1823, 2499
Eco57I CTGAAG 4 cut(s) 108, 638, 1782, 1956
Eco88I CYCGRG 2 cut(s) 960, 1335
EcoO109I RGGNCCY 1 cut(s) 964
EcoRI GAATTC 2 cut(s) 705, 2378
EcoRII CCWGG 3 cut(s) 241, 1566, 1854
EcoRV GATATC 2 cut(s) 1588, 2239
EcoT14I CCWWGG 3 cut(s) 55, 2495, 2515
EcoT22I ATGCAT 3 cut(s) 1172, 1318, 2579
ErhI CCWWGG 3 cut(s) 55, 2495, 2515
FalI AAGNNNNNCTT 4 cut(s) 1240, 1272, 1929, 1961
FaqI GGGAC 6 cut(s) 65, 597, 1041, 1638, 1836, 2330
FauNDI CATATG 2 cut(s) 874, 1096
FbaI TGATCA 2 cut(s) 1633, 2431
FblI GTMKAC 1 cut(s) 2329
FokI GGATG 7 cut(s) 679, 1743, 2051, 2303, 2348, 2406, 2556
FspBI CTAG 4 cut(s) 926, 1053, 1157, 2817
GlaI GCGC 5 cut(s) 506, 1502, 1504, 1700, 2860
GsaI CCCAGC 1 cut(s) 1483
GsuI CTGGAG 4 cut(s) 758, 1398, 2750, 2774
HaeII RGCGCY 1 cut(s) 1702
HaeIII GGCC 6 cut(s) 346, 568, 966, 1648, 1675, 2856
HapII CCGG 1 cut(s) 898
HhaI GCGC 5 cut(s) 507, 1503, 1505, 1701, 2861
Hin1I GRCGYC 1 cut(s) 1548
Hin6I GCGC 5 cut(s) 505, 1501, 1503, 1699, 2859
HinP1I GCGC 5 cut(s) 505, 1501, 1503, 1699, 2859
HindIII AAGCTT 3 cut(s) 1227, 1886, 2468
HinfI GANTC 7 cut(s) 79, 613, 904, 1874, 2072, 2285, 2837
HpaII CCGG 1 cut(s) 898
Hpy166II GTNNAC 4 cut(s) 424, 1538, 1942, 2330
Hpy8I GTNNAC 4 cut(s) 424, 1538, 1942, 2330
HpyAV CCTTC 9 cut(s) 166, 253, 451, 905, 1615, 1712, 1806, 2512, 2845
HpyCH4III ACNGT 8 cut(s) 185, 197, 794, 1367, 1629, 1966, 2035, 2396
HpyCH4IV ACGT 2 cut(s) 1548, 1867
HpyF10VI GCNNNNNNNGC 6 cut(s) 740, 816, 825, 1116, 2800, 2878
HpySE526I ACGT 2 cut(s) 1548, 1867
Hsp92I GRCGYC 1 cut(s) 1548
HspAI GCGC 5 cut(s) 505, 1501, 1503, 1699, 2859
Ksp22I TGATCA 2 cut(s) 1633, 2431
Kzo9I GATC 7 cut(s) 1422, 1633, 2158, 2195, 2230, 2431, 2662
LmnI GCTCC 8 cut(s) 577, 601, 777, 1036, 1696, 1858, 2455, 2808
Lsp1109I GCAGC 7 cut(s) 784, 934, 1340, 2074, 2334, 2419, 2812
MaeI CTAG 4 cut(s) 926, 1053, 1157, 2817
MaeII ACGT 2 cut(s) 1548, 1867
MaeIII GTNAC 4 cut(s) 445, 940, 1879, 2716
MalI GATC 7 cut(s) 1424, 1635, 2160, 2197, 2232, 2433, 2664
MboI GATC 7 cut(s) 1422, 1633, 2158, 2195, 2230, 2431, 2662
MfeI CAATTG 3 cut(s) 917, 2023, 2163
MflI RGATCY 1 cut(s) 2195
MhlI GDGCHC 2 cut(s) 663, 2460
MlsI TGGCCA 1 cut(s) 1648
MluNI TGGCCA 1 cut(s) 1648
MlyI GAGTC 1 cut(s) 2294
MmeI TCCRAC 3 cut(s) 2158, 2259, 2268
Mox20I TGGCCA 1 cut(s) 1648
Mph1103I ATGCAT 3 cut(s) 1172, 1318, 2579
MroXI GAANNNNTTC 1 cut(s) 2369
MscI TGGCCA 1 cut(s) 1648
MseI TTAA 5 cut(s) 674, 1400, 1475, 2109, 2472
MslI CAYNNNNRTG 2 cut(s) 1084, 1937
Msp20I TGGCCA 1 cut(s) 1648
MspI CCGG 1 cut(s) 898
MspR9I CCNGG 4 cut(s) 243, 899, 1568, 1856
MunI CAATTG 3 cut(s) 917, 2023, 2163
Mva1269I GAATGC 1 cut(s) 2889
MvaI CCWGG 3 cut(s) 243, 1568, 1856
MvnI CGCG 5 cut(s) 507, 810, 1503, 2859, 2861
MwoI GCNNNNNNNGC 6 cut(s) 740, 816, 825, 1116, 2800, 2878
NciI CCSGG 1 cut(s) 899
NcoI CCATGG 1 cut(s) 2495
NdeI CATATG 2 cut(s) 874, 1096
NdeII GATC 7 cut(s) 1422, 1633, 2158, 2195, 2230, 2431, 2662
NlaIV GGNNCC 5 cut(s) 53, 965, 1038, 1485, 1824
NmuCI GTSAC 3 cut(s) 445, 940, 2716
NsiI ATGCAT 3 cut(s) 1172, 1318, 2579
NspI RCATGY 3 cut(s) 1174, 1994, 2177
OliI CACNNNNGTG 1 cut(s) 1937
PaeI GCATGC 1 cut(s) 1994
PaeR7I CTCGAG 1 cut(s) 1335
PagI TCATGA 3 cut(s) 709, 2233, 2361
PauI GCGCGC 1 cut(s) 1501
PceI AGGCCT 2 cut(s) 346, 568
PciI ACATGT 1 cut(s) 2173
PctI GAATGC 1 cut(s) 2889
PdmI GAANNNNTTC 1 cut(s) 2369
PfeI GAWTC 6 cut(s) 79, 613, 904, 1874, 2072, 2837
PflFI GACNNNGTC 1 cut(s) 2597
PleI GAGTC 1 cut(s) 2293
PpsI GAGTC 1 cut(s) 2293
PscI ACATGT 1 cut(s) 2173
PsiI TTATAA 1 cut(s) 1743
Psp6I CCWGG 3 cut(s) 241, 1566, 1854
PspFI CCCAGC 1 cut(s) 1479
PspGI CCWGG 3 cut(s) 241, 1566, 1854
PspN4I GGNNCC 5 cut(s) 53, 965, 1038, 1485, 1824
PspPI GGNCC 6 cut(s) 52, 964, 1769, 1823, 2499, 2854
PstI CTGCAG 4 cut(s) 830, 1264, 2352, 2542
PstNI CAGNNNCTG 1 cut(s) 858
PsuI RGATCY 1 cut(s) 2195
PsyI GACNNNGTC 1 cut(s) 2597
PteI GCGCGC 1 cut(s) 1501
RsaI GTAC 3 cut(s) 636, 671, 1364
RsaNI GTAC 3 cut(s) 635, 670, 1363
RseI CAYNNNNRTG 2 cut(s) 1084, 1937
SaqAI TTAA 5 cut(s) 674, 1400, 1475, 2109, 2472
Sau3AI GATC 7 cut(s) 1422, 1633, 2158, 2195, 2230, 2431, 2662
Sau96I GGNCC 6 cut(s) 52, 964, 1769, 1823, 2499, 2854
SbfI CCTGCAGG 1 cut(s) 2542
ScaI AGTACT 2 cut(s) 636, 671
SchI GAGTC 1 cut(s) 2294
ScrFI CCNGG 4 cut(s) 243, 899, 1568, 1856
SdaI CCTGCAGG 1 cut(s) 2542
SduI GDGCHC 2 cut(s) 663, 2460
SfcI CTRYAG 4 cut(s) 826, 1260, 2348, 2538
Sfr274I CTCGAG 1 cut(s) 1335
SinI GGWCC 4 cut(s) 52, 1769, 1823, 2499
SlaI CTCGAG 1 cut(s) 1335
SmiMI CAYNNNNRTG 2 cut(s) 1084, 1937
SmlI CTYRAG 1 cut(s) 1335
SmoI CTYRAG 1 cut(s) 1335
SpeI ACTAGT 2 cut(s) 1052, 2816
SphI GCATGC 1 cut(s) 1994
Sse8387I CCTGCAGG 1 cut(s) 2542
SseBI AGGCCT 2 cut(s) 346, 568
SsiI CCGC 7 cut(s) 44, 1676, 1910, 2549, 2647, 2857, 2861
SspMI CTAG 4 cut(s) 926, 1053, 1157, 2817
StuI AGGCCT 2 cut(s) 346, 568
StyD4I CCNGG 4 cut(s) 241, 897, 1566, 1854
StyI CCWWGG 3 cut(s) 55, 2495, 2515
TaaI ACNGT 8 cut(s) 185, 197, 794, 1367, 1629, 1966, 2035, 2396
TaiI ACGT 2 cut(s) 1551, 1870
TaqI TCGA 3 cut(s) 907, 1336, 1619
TatI WGTACW 3 cut(s) 634, 669, 1362
TauI GCSGC 3 cut(s) 46, 1678, 2859
TfiI GAWTC 6 cut(s) 79, 613, 904, 1874, 2072, 2837
Tru1I TTAA 5 cut(s) 674, 1400, 1475, 2109, 2472
Tru9I TTAA 5 cut(s) 674, 1400, 1475, 2109, 2472
TscAI CASTG 9 cut(s) 690, 1153, 1418, 1939, 2089, 2137, 2399, 2725, 2839
TseFI GTSAC 3 cut(s) 445, 940, 2716
TseI GCWGC 7 cut(s) 797, 922, 1328, 2087, 2347, 2407, 2800
Tsp45I GTSAC 3 cut(s) 445, 940, 2716
TspGWI ACGGA 3 cut(s) 367, 611, 2315
TspRI CASTG 9 cut(s) 690, 1153, 1418, 1939, 2089, 2137, 2399, 2725, 2839
Tth111I GACNNNGTC 1 cut(s) 2597
VpaK11BI GGWCC 4 cut(s) 52, 1769, 1823, 2499
XapI RAATTY 3 cut(s) 705, 2013, 2378
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 3 cut(s) 1174, 1994, 2177
XcmI CCANNNNNNNNNTGG 2 cut(s) 1494, 1607
XhoI CTCGAG 1 cut(s) 1335
XmiI GTMKAC 1 cut(s) 2329
XmnI GAANNNNTTC 1 cut(s) 2369
XspI CTAG 4 cut(s) 926, 1053, 1157, 2817
ZraI GACGTC 1 cut(s) 1549
ZrmI AGTACT 2 cut(s) 636, 671
Zsp2I ATGCAT 3 cut(s) 1172, 1318, 2579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.