Rh7BG355900

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000280
Physical Location & Seq
Forward (+)
37354307 .. 37360684
6378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG355900.1

Sequence Viewer

Length: 4518 bp
ATGAAATTCAAGGCGACGGCGGCGAGATTGAGGCCCGGAGGCACAAAGCGGCGGAACGGCGGTGGTGTGGGTATTTTGGGAATTCAGAACGACGACGGAACAAATGGTGGAGGACCAAAGGTTGTTCCCTGGGGGAGGAAGCGGCGGAGGACAGGATGCGAGGGTATTTTGGGATATCAAAATGAAGGAGAGGCAAGGGCGGCAAATTGGTGCACAAGGGCTCCCTTGGACGTGTCGACATATTGCCATCAATGTAAGCGAAATCGTAAGGAAAGAGTGGTGCGGTGCACAAGGTGTGCCGAAAGAGGTAAGCGAAACAGGTATTGTATCAGTTGCATTCGGAGACGGTATCCCAACACATCAGAGCAAGCCATTGCTGAGGCTTGTCCTGTGTGCCGCGGCAACTGCAACTGCGCAGCCTGCCTTCGATTGGATGTGCGTTTCAGGCGTTTGGAGAATCGAGACCCGAAAACCGATGAGGAGACCAAGCTGGAGCACTCTAAGTATTTGGTTCATCAGCTGCTTCCTTATTTGAAGATGATTAGGGATGAGCAGGTGAGTGAGATGGTGGTGGAAGCCAAGAGGCAGGGGTTAGGTGATCTTTCCAAGCTCAAGGTGGAGAAGGCTAATTGCGGTGACCAAATGCGTGTGTACTGCAACAGCTGCAGCACTTCGATTTTTGATTTTCATAGGACTTGTCCCGGGTGTGAGTATGATCTGTGCCTCGGTTGCTGCCGGGAGATTCGAGATGGGAAGTGGAACAAGAGAGCTCAAGTGTCCACATTTGAGTGGAAGTGGAGAGCAAGTGAAGATGGAAGCATTCTCTGCCCCCCAACACACATGAAAGGTTGTGGTAAGCATCTTTTAGAATTGAGATGCATTTTTCCTCAGAATCATGTCATGGAATTGGTAGAGAAAGCAGGAAAAATAGATGCAAGTTACAATTTTCTGCCTGATCGTAGTGAAACATGTGCATATAAGTGTTCATGTGTTAAACCTGTGGATGATGCCGTTTGCTCAAGTAGCAGCAGCTGTAAGTTAAGGAAAGCAGCTTGTAGAGTTGCTTCTGATAGTGACTACTTGTTCTGTCCAAGGGTTGGACAAATCCAAGATAAGGATTTTGGGCATTTTCAGTGGCATTGGAAGAGGGGTGAGCCTGTGATCGTTAGCAATGCACTTGAAAATGGATCAGGTTTAAGCTGGGAACCATCTGTCATGTGGCGGGCATTTAGACAGAAAAAGAAAATCAAGCATGGTAGTGATTTGACGGTCCACGCCATTGATTGCTGGGATTGGTGTTTTATAGAAATCAACCTCCTCCATTTCTTTAATGGATATTCCAACGGACGGTCTTATGAGACAGGATGGCCTCAGAATCTCAAGCTCAGTGACTTCCCATCATCTACTGAGTTTCACAATCGTCTTCCCCGGCATAGTGAGGAATTTTTATGTTGTCTGCCTTTCAAGGAGTATACTCACCCCAACATGGGAACCCTGAACCTTGCTATCTACTTGCCACCTACCTCAGTAAAGCCAGACATGGGTCCAAAAACATATATTGCCTATGGTTTTGCACAGGAGCTTGAACGGGGAGATTCTGTAACCAAGCTTCACTATAATATGTCTGATGCGGTCAATATTCTGACTCATACAGCTGAAGTGGCCCTTACAACTGAACAACTGGCAACTATCGAGAAGTTGAAGAAAAAGCACAGGGAGCAAGACGAAAGAGAGATATTTGGGAATTGTCACCCAAGTGCTGGAAATGGAAGTGGGCCTCAGCAAGAATCAGCTGAAATATGTGAGGATGGAGGTGCCTTATGGGACATTTTCCAGATTGAGGATGTTCCGCAGTTGGAGAAATACATCCACAAGCACGTCAATGAATTTATGCATGTGCTGTGTAATCCTTTGCAGCATGTTACTCATGCTATACATGATCAGACTGTTTATCTCACTGCGGAGCACAAGAGGAAGCTCAAGGAGGAATTCGGTGTCGAGCCGTGGACATTTGTTCAAAAACTTGGAGATGCTATTTTCATTCCTGCAGGTTGTCCTCATCAGGTGAGGAACTTGAAGTCTTGTTTCAAAGTTGCACTGGAGTTTGTTTCCCCTGAGAATGTGGGTGAGTGCTTTCGTTTGACTGAAGAGTTTCGCACACTTCCGACAAACCACAGAGCCAGTGAGGACAAGCTGGAGGTGAAGAAAATGATTGTGCATGCTGTTTGTGAAGCTGTGAAGGAGATTTCTGGTGAGAATGTGATGACGAGGGTAAAGAGGGCAAGGGCTGTGAAGGCAAAGAGGGCAAGGGCTCCCTTGGTCGTGTTGAGAGTGTGCCATCAGTGTCAGAGAAATGGTAAGGGAAGAATGGTGTGGTGCACAAGGTGTGCGAAGAAGAGGTATTGTATTCCTTGCATACAAAGATGCTATCCCAACACATCAGAGGAAGCCATTGCTAAGGCTTGTCCTGTGTGCCGCGGCAACTGCAACTGCACAACCTGCCTTCGTTTGGATGTGCCTGTCAGGAGTTTGCAGAATCTAGACCTGAAAATCGACAAGGGTACCAAGCTGGAGCACTGTAAGTATTTGGTTCATCAGCTGCTTCCCTATTTGAAGAGGATTAGGGATGAGCAGGTGAGTGAGATGGTGGTCGAGGCTAATAGGCGGGGGTTAGGTGATGTTTCGGAGCTCAAGGTGGAGAAGGCTAATTGCGGTGAAGACGAGCGTATGTACTGCAACAGCTGCAGCACTTCAATTTTTGATTTTCATAGGACTTGTCCCGGGTGTGAGTATGATCTGTGCCTAAGTTGCTGCCGGGAGATTCGAGATGGGAAGTGGAAGAAGAGAGCTCAAGTGTCCACATTTGAGTGGAGAGCAAGTGAATATGGAATCATTCTCTGCCCCCCAACACACATGAAAGGTTGTGGTAAGCATAATTTAGAATTGAGATGCATTTTTTCCCAGAATCATGTCATGGAATTGGTGGAGAAAGCAGAAAAAATAGATGCAAGTTACAATTTTTTGCCTGATCGTAGTGAAACATGTGCATATAAGTGTTCATGTGTTAAACCTGTGGATGATGCCGTTTGCTCAAGTAGCAGCAGCTGTAAGTTAAGGAAAGCAGCTTGTAGAGTTGCTTCTGATAGTGACTACTTGTTCTGTCCAAGGGTTGGACAAATCCAAGATAAGGATTTTGGGCATTTTCAGTGGCATTGGAAGAGGGGTGAGCCTGTGATCGTTAGCAATGCACTTGAAAGTGGATCAGGTTTAAGCTGGGAACCATCTGTCATGTGGCGGGCATTTAGACAGATAAAGAACATCAAGAATGATAGTGAATTGACATTCCATGCCATTGATTGCTGGGATTGGTGTTTTATAGAAATCAACATCATCCATTTCTTTAGTGGATATTCCTACGGACGGTCTTATAAGACAGGATGGCCTCAGAATCTCAAGCTCAATGACTTCCCATCATCTACTGAGTTTTACAAGCGTCTTCCCCGGCATGGTAAGGAATTTTTATGTTGTTTGCCTTTCAAGGAGTATACTCACCCCAACAAGGGAGCTCTGAACCTTGCTATCTACTTGCCTCCTACCTCAGTAAAGCCGGACATGGGTCCAAAAACATATATTGCCTATGGTTTTGCACAGGAGCTTGAACGGGGAGATTCTGTAACCAAACTTCACTGCAATATGTCTGATGCGGTTAATATTCTGACACATACAGCTGAAGTGGCCCTTACAACTGAACAACTTGCAACTATAGAGAAGTTGAAGAAAAAGCACAGGGAGCAAAACGAAAGGGAGATATTTGGGAATTGTCACACAAGTGCTGGAAATGGAAGTGGGCCTCAGCAAGAGTCAGCTATAGAGAAGTTGAAGAAAAAGCACAGGGAGCAAAACGAAAGAGAGATATTTGGGAATTGTCACACAAGTGCTGGAAATGGAAGTGGGCGTCAGCAAGAGTCAGCTGAAGTATGTGAGGATGGAGGTGCCTTATGGGACATTTTCCGGATCCAGGATGTTCCGCAGCTGGAGAAATACATCCGCAAGCACGTTAATGAATTTATGCATGTGCTCTGTAATCCTTTGCAGCATGTTACTCATGCTATACATGATCAGACTGTTTATCTCTCTGTGGAGCACAAGAGGAAGCTCAAGGAGGAATTCGGTATCGAGCCGTGGACATTTGTCCAAAAACTTGGAGATGCTGTTTTCATTCCTGCAGGTTGTCCTCATCAGGTGAGGAACTTGAAGTCTTGTATCAAAGTTGCACTGGAGTTTGTTTCCCCTGAGAATGTGGGTGAGTGCTTTCGTTTGACGGAAGAGTTTCGCACACTTCCGACAAACCACAGAGCCAGTGAGGACAAGCTGGAGGTGAAGAAAATGATTGTGCATGCTGTTTGTAAAGCTGTGAAGGAGATTTCTGGTGGGAATGTGATGACTGAGGATGCAAAGCCTAGGGGAGGCGCAAGGGAATTAAGGCAAGGGATAAGGCTCAAGTCTTACAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

1505

Amino Acids

171.63

Weight (kDa)

8.7

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 79 - 143 6.8e-08 Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC PF02373 608 - 702 3.7e-12 JmjC domain, hydroxylase
zf-4CXXC_R1 PF10497 777 - 836 7.3e-06 Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC PF02373 1349 - 1428 1.6e-12 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3429
AarI CACCTGC 2 cut(s) 544, 2623
Acc16I TGCGCA 1 cut(s) 415
Acc36I ACCTGC 5 cut(s) 544, 2039, 2507, 2623, 4217
Acc65I GGTACC 1 cut(s) 2561
AccB1I GGYRCC 3 cut(s) 1814, 2561, 3992
AccB7I CCANNNNNTGG 3 cut(s) 1097, 1760, 3170
AccI GTMKAC 3 cut(s) 236, 1472, 3545
AccII CGCG 2 cut(s) 399, 2478
AccIII TCCGGA 1 cut(s) 4011
AclWI GGATC 4 cut(s) 1195, 3268, 4009, 4022
AcsI RAATTY 8 cut(s) 5, 81, 1442, 1886, 1988, 3515, 4064, 4166
AcuI CTGAAG 4 cut(s) 1677, 2166, 3750, 3993
AcyI GRCGYC 1 cut(s) 3955
AdeI CACNNNGTG 2 cut(s) 294, 2385
AfaI GTAC 3 cut(s) 653, 2563, 2732
AflIII ACRYGT 3 cut(s) 231, 968, 3041
AjiI CACGTC 2 cut(s) 232, 1879
AjnI CCWGG 2 cut(s) 128, 4017
AleI CACNNNNGTG 3 cut(s) 1755, 3828, 3933
Alw26I GTCTC 4 cut(s) 337, 456, 476, 1352
Alw44I GTGCAC 3 cut(s) 211, 286, 2377
AlwI GGATC 4 cut(s) 1195, 3268, 4009, 4022
AlwNI CAGNNNCTG 2 cut(s) 1032, 3105
Ama87I CYCGRG 2 cut(s) 701, 2780
Aor13HI TCCGGA 1 cut(s) 4011
AoxI GGCC 7 cut(s) 32, 1367, 1662, 1775, 3440, 3735, 3848
ApaLI GTGCAC 3 cut(s) 211, 286, 2377
ApoI RAATTY 8 cut(s) 5, 81, 1442, 1886, 1988, 3515, 4064, 4166
Asp700I GAANNNNTTC 2 cut(s) 2151, 4329
Asp718I GGTACC 1 cut(s) 2561
AspA2I CCTAGG 1 cut(s) 4460
AspLEI GCGC 2 cut(s) 416, 4472
AspS9I GGNCC 9 cut(s) 33, 113, 1270, 1544, 1663, 1775, 3617, 3736, 3848
AsuC2I CCSGG 9 cut(s) 36, 702, 703, 737, 1429, 2781, 2782, 2816, 3502
AvaI CYCGRG 2 cut(s) 701, 2780
AvaII GGWCC 4 cut(s) 113, 1270, 1544, 3617
AvrII CCTAGG 1 cut(s) 4460
BaeGI GKGCMC 3 cut(s) 215, 290, 2381
BaeI ACNNNNGTAYC 2 cut(s) 2545, 2578
BamHI GGATCC 1 cut(s) 4014
BanI GGYRCC 3 cut(s) 1814, 2561, 3992
BanII GRGCYC 6 cut(s) 223, 772, 2314, 2691, 2851, 3568
BarI GAAGNNNNNNTAC 8 cut(s) 1048, 1080, 1593, 1625, 3121, 3153, 3666, 3698
BbsI GAAGAC 3 cut(s) 1415, 2724, 3488
BbvCI CCTCAGC 3 cut(s) 378, 1779, 3852
BceAI ACGGC 6 cut(s) 33, 73, 995, 1987, 3068, 4165
BciT130I CCWGG 2 cut(s) 130, 4019
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 2 cut(s) 1939, 4117
BcnI CCSGG 9 cut(s) 36, 702, 703, 737, 1429, 2781, 2782, 2816, 3502
BcoDI GTCTC 4 cut(s) 337, 456, 476, 1352
BfaI CTAG 2 cut(s) 2540, 4461
BfmI CTRYAG 6 cut(s) 664, 2046, 2743, 3762, 3867, 4224
BfuAI ACCTGC 5 cut(s) 544, 2039, 2507, 2623, 4217
BfuI GTATCC 1 cut(s) 360
BlnI CCTAGG 1 cut(s) 4460
Bme18I GGWCC 4 cut(s) 113, 1270, 1544, 3617
BmeT110I CYCGRG 2 cut(s) 701, 2780
BmgBI CACGTC 2 cut(s) 232, 1879
BmgT120I GGNCC 9 cut(s) 33, 113, 1270, 1544, 1663, 1775, 3617, 3736, 3848
BoxI GACNNNNGTC 3 cut(s) 1542, 3615, 4190
BpiI GAAGAC 3 cut(s) 1415, 2724, 3488
BpmI CTGGAG 7 cut(s) 512, 2120, 2216, 2591, 4055, 4298, 4394
Bpu10I CCTNAGC 4 cut(s) 378, 1779, 2457, 3852
BpuMI CCSGG 9 cut(s) 36, 702, 703, 737, 1429, 2781, 2782, 2816, 3502
BsaHI GRCGYC 1 cut(s) 3955
BsaI GGTCTC 2 cut(s) 456, 476
BsaWI WCCGGW 1 cut(s) 4011
Bse1I ACTGG 5 cut(s) 1686, 2103, 2181, 4281, 4359
Bse3DI GCAATG 4 cut(s) 372, 1177, 2451, 3250
BseAI TCCGGA 1 cut(s) 4011
BseBI CCWGG 2 cut(s) 130, 4019
BseMI GCAATG 4 cut(s) 372, 1177, 2451, 3250
BseNI ACTGG 5 cut(s) 1686, 2103, 2181, 4281, 4359
BseRI GAGGAG 2 cut(s) 494, 1307
BseSI GKGCMC 3 cut(s) 215, 290, 2381
BseYI CCCAGC 4 cut(s) 1200, 1287, 3273, 3360
BsgI GTGCAG 1 cut(s) 2476
Bsh1236I CGCG 2 cut(s) 399, 2478
BshFI GGCC 7 cut(s) 34, 1369, 1664, 1777, 3442, 3737, 3850
BshNI GGYRCC 3 cut(s) 1814, 2561, 3992
BsiHKCI CYCGRG 2 cut(s) 701, 2780
BsiSI CCGG 9 cut(s) 36, 702, 736, 1429, 2781, 2815, 3502, 3608, 4012
BslFI GGGAC 4 cut(s) 684, 1838, 2763, 4016
BsmAI GTCTC 4 cut(s) 337, 456, 476, 1352
BsmBI CGTCTC 1 cut(s) 337
BsmFI GGGAC 4 cut(s) 684, 1838, 2763, 4016
BsmI GAATGC 2 cut(s) 336, 819
BsnI GGCC 7 cut(s) 34, 1369, 1664, 1777, 3442, 3737, 3850
Bso31I GGTCTC 2 cut(s) 456, 476
BsoBI CYCGRG 2 cut(s) 701, 2780
Bsp13I TCCGGA 1 cut(s) 4011
BspANI GGCC 7 cut(s) 34, 1369, 1664, 1777, 3442, 3737, 3850
BspEI TCCGGA 1 cut(s) 4011
BspFNI CGCG 2 cut(s) 399, 2478
BspMAI CTGCAG 4 cut(s) 668, 2050, 2747, 4228
BspMI ACCTGC 5 cut(s) 544, 2039, 2507, 2623, 4217
BspPI GGATC 4 cut(s) 1195, 3268, 4009, 4022
BspT107I GGYRCC 3 cut(s) 1814, 2561, 3992
BspTNI GGTCTC 2 cut(s) 456, 476
BsrDI GCAATG 4 cut(s) 372, 1177, 2451, 3250
BsrI ACTGG 5 cut(s) 1686, 2103, 2181, 4281, 4359
BssNAI GTATAC 2 cut(s) 1473, 3546
BssNI GRCGYC 1 cut(s) 3955
BssT1I CCWWGG 5 cut(s) 225, 1091, 2316, 3164, 4460
Bst1107I GTATAC 2 cut(s) 1473, 3546
Bst2UI CCWGG 2 cut(s) 130, 4019
Bst4CI ACNGT 7 cut(s) 348, 1270, 1350, 1948, 2579, 3423, 4126
Bst6I CTCTTC 7 cut(s) 1139, 2142, 2390, 2609, 2837, 3212, 4320
BstACI GRCGYC 1 cut(s) 3955
BstAPI GCANNNNNTGC 4 cut(s) 663, 825, 2499, 2742
BstC8I GCNNGC 7 cut(s) 369, 421, 1224, 2220, 3297, 4052, 4398
BstDSI CCRYGG 4 cut(s) 397, 2003, 2476, 4181
BstEII GGTNACC 1 cut(s) 635
BstENI CCTNNNNNAGG 2 cut(s) 133, 4464
BstFNI CGCG 2 cut(s) 399, 2478
BstHHI GCGC 2 cut(s) 416, 4472
BstMAI GTCTC 4 cut(s) 337, 456, 476, 1352
BstNI CCWGG 2 cut(s) 130, 4019
BstNSI RCATGY 8 cut(s) 972, 1898, 1922, 2222, 3045, 4076, 4100, 4400
BstPAI GACNNNNGTC 3 cut(s) 1542, 3615, 4190
BstPI GGTNACC 1 cut(s) 635
BstSFI CTRYAG 6 cut(s) 664, 2046, 2743, 3762, 3867, 4224
BstSLI GKGCMC 3 cut(s) 215, 290, 2381
BstUI CGCG 2 cut(s) 399, 2478
BstV2I GAAGAC 3 cut(s) 1415, 2724, 3488
BstX2I RGATCY 1 cut(s) 4014
BstXI CCANNNNNNTGG 1 cut(s) 4202
BstYI RGATCY 1 cut(s) 4014
BstZ17I GTATAC 2 cut(s) 1473, 3546
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 7 cut(s) 34, 1369, 1664, 1777, 3442, 3737, 3850
BtgI CCRYGG 4 cut(s) 397, 2003, 2476, 4181
BtrI CACGTC 2 cut(s) 232, 1879
BtsI GCAGTG 2 cut(s) 1956, 3685
BveI ACCTGC 5 cut(s) 544, 2039, 2507, 2623, 4217
Cac8I GCNNGC 7 cut(s) 369, 421, 1224, 2220, 3297, 4052, 4398
CaiI CAGNNNCTG 2 cut(s) 1032, 3105
CfoI GCGC 2 cut(s) 416, 4472
Cfr13I GGNCC 9 cut(s) 33, 113, 1270, 1544, 1663, 1775, 3617, 3736, 3848
Cfr42I CCGCGG 2 cut(s) 400, 2479
Cfr9I CCCGGG 2 cut(s) 701, 2780
CseI GACGC 2 cut(s) 3482, 3944
Csp6I GTAC 3 cut(s) 652, 2562, 2731
CviQI GTAC 3 cut(s) 652, 2562, 2731
DraIII CACNNNGTG 2 cut(s) 294, 2385
Eam1104I CTCTTC 7 cut(s) 1139, 2142, 2390, 2609, 2837, 3212, 4320
EarI CTCTTC 7 cut(s) 1139, 2142, 2390, 2609, 2837, 3212, 4320
EciI GGCGGA 2 cut(s) 67, 160
Ecl136II GAGCTC 4 cut(s) 770, 2689, 2849, 3566
Eco130I CCWWGG 5 cut(s) 225, 1091, 2316, 3164, 4460
Eco24I GRGCYC 6 cut(s) 223, 772, 2314, 2691, 2851, 3568
Eco31I GGTCTC 2 cut(s) 456, 476
Eco32I GATATC 1 cut(s) 176
Eco47I GGWCC 4 cut(s) 113, 1270, 1544, 3617
Eco53kI GAGCTC 4 cut(s) 770, 2689, 2849, 3566
Eco57I CTGAAG 4 cut(s) 1677, 2166, 3750, 3993
Eco88I CYCGRG 2 cut(s) 701, 2780
Eco91I GGTNACC 1 cut(s) 635
EcoICRI GAGCTC 4 cut(s) 770, 2689, 2849, 3566
EcoNI CCTNNNNNAGG 2 cut(s) 133, 4464
EcoO65I GGTNACC 1 cut(s) 635
EcoRI GAATTC 3 cut(s) 81, 1988, 4166
EcoRII CCWGG 2 cut(s) 128, 4017
EcoRV GATATC 1 cut(s) 176
EcoT14I CCWWGG 5 cut(s) 225, 1091, 2316, 3164, 4460
EcoT22I ATGCAT 4 cut(s) 881, 1896, 2954, 4074
EcoT38I GRGCYC 6 cut(s) 223, 772, 2314, 2691, 2851, 3568
ErhI CCWWGG 5 cut(s) 225, 1091, 2316, 3164, 4460
Esp3I CGTCTC 1 cut(s) 337
FalI AAGNNNNNCTT 4 cut(s) 1650, 1682, 3723, 3755
FaqI GGGAC 4 cut(s) 684, 1838, 2763, 4016
FauI CCCGC 3 cut(s) 1215, 2658, 3288
FbaI TGATCA 2 cut(s) 1939, 4117
FblI GTMKAC 3 cut(s) 236, 1472, 3545
FriOI GRGCYC 6 cut(s) 223, 772, 2314, 2691, 2851, 3568
FspBI CTAG 2 cut(s) 2540, 4461
FspI TGCGCA 1 cut(s) 415
GlaI GCGC 2 cut(s) 415, 4471
GsaI CCCAGC 4 cut(s) 1204, 1291, 3277, 3364
GsuI CTGGAG 7 cut(s) 512, 2120, 2216, 2591, 4055, 4298, 4394
HaeIII GGCC 7 cut(s) 34, 1369, 1664, 1777, 3442, 3737, 3850
HapII CCGG 9 cut(s) 36, 702, 736, 1429, 2781, 2815, 3502, 3608, 4012
HgaI GACGC 2 cut(s) 3482, 3944
HhaI GCGC 2 cut(s) 416, 4472
Hin1I GRCGYC 1 cut(s) 3955
Hin6I GCGC 2 cut(s) 414, 4470
HinP1I GCGC 2 cut(s) 414, 4470
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 1607
HpaII CCGG 9 cut(s) 36, 702, 736, 1429, 2781, 2815, 3502, 3608, 4012
Hpy188III TCNNGA 9 cut(s) 461, 746, 1693, 1834, 2524, 2540, 2825, 3322, 4012
Hpy99I CGWCG 3 cut(s) 19, 95, 98
HpyAV CCTTC 8 cut(s) 179, 434, 616, 2233, 2287, 2513, 2695, 4411
HpyCH4III ACNGT 7 cut(s) 348, 1270, 1350, 1948, 2579, 3423, 4126
HpyCH4IV ACGT 3 cut(s) 231, 1878, 4056
HpySE526I ACGT 3 cut(s) 231, 1878, 4056
Hsp92I GRCGYC 1 cut(s) 3955
HspAI GCGC 2 cut(s) 414, 4470
Kpn2I TCCGGA 1 cut(s) 4011
KpnI GGTACC 1 cut(s) 2565
Ksp22I TGATCA 2 cut(s) 1939, 4117
KspI CCGCGG 2 cut(s) 400, 2479
MaeI CTAG 2 cut(s) 2540, 4461
MaeII ACGT 3 cut(s) 231, 1878, 4056
MflI RGATCY 1 cut(s) 4014
MlyI GAGTC 3 cut(s) 1639, 3869, 3974
MmeI TCCRAC 6 cut(s) 1078, 1365, 1836, 2189, 3151, 4367
Mph1103I ATGCAT 4 cut(s) 881, 1896, 2954, 4074
MroI TCCGGA 1 cut(s) 4011
MroXI GAANNNNTTC 2 cut(s) 2151, 4329
MspI CCGG 9 cut(s) 36, 702, 736, 1429, 2781, 2815, 3502, 3608, 4012
Mva1269I GAATGC 2 cut(s) 336, 819
MvaI CCWGG 2 cut(s) 130, 4019
MvnI CGCG 2 cut(s) 399, 2478
NciI CCSGG 9 cut(s) 36, 702, 703, 737, 1429, 2781, 2782, 2816, 3502
NmuCI GTSAC 7 cut(s) 635, 1073, 1388, 1748, 3146, 3821, 3926
NsbI TGCGCA 1 cut(s) 415
NsiI ATGCAT 4 cut(s) 881, 1896, 2954, 4074
NspI RCATGY 8 cut(s) 972, 1898, 1922, 2222, 3045, 4076, 4100, 4400
OliI CACNNNNGTG 3 cut(s) 1755, 3828, 3933
PaeI GCATGC 2 cut(s) 2222, 4400
PaqCI CACCTGC 2 cut(s) 544, 2623
PasI CCCWGGG 1 cut(s) 129
PciI ACATGT 2 cut(s) 968, 3041
PctI GAATGC 2 cut(s) 336, 819
PdmI GAANNNNTTC 2 cut(s) 2151, 4329
PflMI CCANNNNNTGG 3 cut(s) 1097, 1760, 3170
PfoI TCCNGGA 1 cut(s) 4017
PleI GAGTC 3 cut(s) 1639, 3868, 3973
PpsI GAGTC 3 cut(s) 1639, 3868, 3973
PscI ACATGT 2 cut(s) 968, 3041
PshAI GACNNNNGTC 3 cut(s) 1542, 3615, 4190
PsiI TTATAA 1 cut(s) 3429
Psp124BI GAGCTC 4 cut(s) 772, 2691, 2851, 3568
Psp6I CCWGG 2 cut(s) 128, 4017
PspEI GGTNACC 1 cut(s) 635
PspFI CCCAGC 4 cut(s) 1200, 1287, 3273, 3360
PspGI CCWGG 2 cut(s) 128, 4017
PspPI GGNCC 9 cut(s) 33, 113, 1270, 1544, 1663, 1775, 3617, 3736, 3848
PstI CTGCAG 4 cut(s) 668, 2050, 2747, 4228
PstNI CAGNNNCTG 2 cut(s) 1032, 3105
PsuI RGATCY 1 cut(s) 4014
RsaI GTAC 3 cut(s) 653, 2563, 2732
RsaNI GTAC 3 cut(s) 652, 2562, 2731
SacI GAGCTC 4 cut(s) 772, 2691, 2851, 3568
SacII CCGCGG 2 cut(s) 400, 2479
SalI GTCGAC 1 cut(s) 235
Sau96I GGNCC 9 cut(s) 33, 113, 1270, 1544, 1663, 1775, 3617, 3736, 3848
SbfI CCTGCAGG 2 cut(s) 2050, 4228
SchI GAGTC 3 cut(s) 1639, 3869, 3974
SdaI CCTGCAGG 2 cut(s) 2050, 4228
SfcI CTRYAG 6 cut(s) 664, 2046, 2743, 3762, 3867, 4224
Sfr303I CCGCGG 2 cut(s) 400, 2479
SgrBI CCGCGG 2 cut(s) 400, 2479
SinI GGWCC 4 cut(s) 113, 1270, 1544, 3617
SmaI CCCGGG 2 cut(s) 703, 2782
SphI GCATGC 2 cut(s) 2222, 4400
Sse8387I CCTGCAGG 2 cut(s) 2050, 4228
SspI AATATT 2 cut(s) 1639, 3712
SspMI CTAG 2 cut(s) 2540, 4461
SstI GAGCTC 4 cut(s) 772, 2691, 2851, 3568
StyI CCWWGG 5 cut(s) 225, 1091, 2316, 3164, 4460
TaaI ACNGT 7 cut(s) 348, 1270, 1350, 1948, 2579, 3423, 4126
TaiI ACGT 3 cut(s) 234, 1881, 4059
TatI WGTACW 2 cut(s) 651, 2730
TauI GCSGC 8 cut(s) 23, 52, 145, 203, 399, 402, 2478, 2481
TseFI GTSAC 7 cut(s) 635, 1073, 1388, 1748, 3146, 3821, 3926
Tsp45I GTSAC 7 cut(s) 635, 1073, 1388, 1748, 3146, 3821, 3926
TspGWI ACGGA 4 cut(s) 111, 1359, 3432, 4337
TspMI CCCGGG 2 cut(s) 701, 2780
Van91I CCANNNNNTGG 3 cut(s) 1097, 1760, 3170
VneI GTGCAC 3 cut(s) 211, 286, 2377
VpaK11BI GGWCC 4 cut(s) 113, 1270, 1544, 3617
XagI CCTNNNNNAGG 2 cut(s) 133, 4464
XapI RAATTY 8 cut(s) 5, 81, 1442, 1886, 1988, 3515, 4064, 4166
XbaI TCTAGA 1 cut(s) 2539
XceI RCATGY 8 cut(s) 972, 1898, 1922, 2222, 3045, 4076, 4100, 4400
XcmI CCANNNNNNNNNTGG 5 cut(s) 613, 1215, 1328, 3288, 3401
XmaI CCCGGG 2 cut(s) 701, 2780
XmaJI CCTAGG 1 cut(s) 4460
XmiI GTMKAC 3 cut(s) 236, 1472, 3545
XmnI GAANNNNTTC 2 cut(s) 2151, 4329
XspI CTAG 2 cut(s) 2540, 4461
Zsp2I ATGCAT 4 cut(s) 881, 1896, 2954, 4074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.