Rw0G007860

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00290
OG0000280
Physical Location & Seq
Reverse (-)
11625 .. 14858
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007860.1

Sequence Viewer

Length: 2343 bp
ATGAATATAGTTTTCAATATCCAACCCTCTTCTGTTACCTTGTACAAGACGGGTTGTTCTCTCGGGTTTATTACAGAGAGCGGCGGTGGTGTGGTGGAGAAGGGCGGCGAGGGTATTTTGGGAATTGAAGACGAAGAGTCGACTCTGACTCTGGCCGTGATGTTGAAGCGGCTGCGTCGGAAAAAGAAGATGGGGAAGAGTGTTCTGGAGGGTTTAGAGCGTAAAGATTTGATCTTTGGTGATCGAATTGAAGGGCAAAAGGGGAAAGGCGAAGAGGGTGAGGAGAAGAATCAAGGAAATGGGGTTTCTGATGTGGGTTTTGGCAAAGAGGGAGTGAGTGATGGAATTGAAGAGGGTTTGGTGAACAAGAAGAAATGTGGTAAAAAGGGTATGGAATCTGAGAGGTTTGGAGAAAATGGTGATGTGGGTTTTGGTAAAGAGGGAGTGAGAGATGAAAATGAAGAGGGTTTAGTGAAGACTGAGCAAGTTAATGGGGATGTGGAGAAGAATGGAAGATGGAGCAGAGCAGATGTGTCGACAATGTGTCAACAATGTCAGAGAAATGATCATGGGAGAGTTGTTCGTTGCAGAGGGTGTTCAGAAAGGGGAGAGAGGAAGCGGTATTGTATTCCTTGCATAAAGAAATGGTATCCCAATTCATCAGAGGAGGATTTTGCCGAGGCTTGTCCTGTTTGCCTTGGGAATTGTAATTGCAAAGCGTGCTTGCGTTTGGATGTGCCTCTGAGATGCTTCAAGAATCGAGACTTGGAGATTGGGGAAGACGAGAGGCTAGAGCATTGTAAGTATTTGGTGAATCGGTTGCTTCCTTATTTGAAGAGGATTAATGATGAACAGGTGAGTGAGATGAAATTTGAGGCTGAGAAAGAAGGGTTGGTGGAGTTTGAGGAGATGGAAATTGAAAAGTCTAATTGCCGTGTTGGTGAGAGGATGTACTGCAACAACTGCAAGACTTCGATTTTCGACTTTCACAGAAGCTGTCCTGGATGCCAATATGATCTGTGTCTTAAGTGTTTCCGGGAGATTAGGGGTGGAGACTTGAAGGGAGGTGGGGAGGAAATGGTTGAGAAATATGGAAATCGGGGATTTGAGTGTTTCGATGGTGAGGGAAAGATTATTCAGAGGAATGGTGTGGGAACTAGGAGGCTGAGGTCTTCTTCTGCAAAGTCAAAGTTTGAATGGAAAGCAGATAAAGATGGAAGCATTCGTTGCCCCCCAGAGCACAAGGAAGGTTGCGGTAAGTATCGTTTAGAACTTAGATGTTTATTTCCTGGAAATAAAAAAGCTGAAAATATAGATGAGAGCTATAAAATTTTACATGCTAGTAGTGAAACTTGTGAAGAAAGTTGTTCATGTATAAACCCTGTGGATGATGACAATTATTTGTTCTGTCCAAGGGCTGAAAGCATTCAACCCGAGGATTTTGAGCATTTTCAGAGGCATTGGATGAGGTGTGAGCCTGTTATTGTGAGCAATGCGCTTGAAAATGGTTCAGGGTTGAGTTGGGAACCCTTAGTCATGTCGAGGGCTTTTCGTCAAGTTAATAATACTAAGCATGAGAAGGATGTGGAAGTTCAGGCCATTGATTGCTTGGATTGGTGCATGTTTGATACAAAAGACTGCCCTCGGATCCTAAAACTTAAAGACTGGCCGCCCTCCACTGATTTTGATAAACATCTTCCTCGCCATGGCAAGGAGTTTGTGTGTTGCTTGCCTCTCAAGGAATACACTCATCCAACAGGTAGTATTCTAAACCTTGCTTGTCACTTGCCCAAAAGAGCTGTCAAACCTGACTTGGGGCCAAAGACATACATTGCATATGGGGTTGCTCAGGAACTTGGACGAGGAGATTTTAACATTCTGACCCATGCTACTGAAGTGACCCTTGAACCTAAACATCTTGCTGCTATAGAAGAGAGACTCACTTGCAAGGAAGAAGAAGATGATGCAGGTGGAGGAGGTGCTCTATGGGACATTTTCCGGGTACAGGATGTTCCAAAGCTGGAGCAATACATAAAGAAGCATTGTAGGGAATTCAGGCACTTCCAGTGTAGGCCATTGAAACTGTCTCGCATTAATGTTGCAATGGATTTTGTTTCCCTCGAAACCGTTGGTCAATGCTTTCGGCTGACAGAGGAGTTCTGCACTCTCCCGACAGATCATAGGGCAAGCGAGGACAAGTTAGAATATAAAAAAATTATTGTTCATGCTGTCTTTGATGCTGTGAAGGAGATTACTGGTGGGAAGGAGAGGCCTAAGGATGTCAAGCCTGATGAGAGGCCTATATGTGCGAGGCGTAAGGGAAAGGCCTATATGTGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

780

Amino Acids

88.62

Weight (kDa)

6.23

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1958
Acc36I ACCTGC 1 cut(s) 1958
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 2 cut(s) 140, 536
AciI CCGC 7 cut(s) 81, 84, 105, 169, 619, 1254, 1670
AclWI GGATC 2 cut(s) 1642, 1655
AcoI YGGCCR 2 cut(s) 153, 1667
AcsI RAATTY 3 cut(s) 869, 1329, 2051
AcuI CTGAAG 1 cut(s) 1914
AfaI GTAC 3 cut(s) 44, 953, 2004
AfiI CCNNNNNNNGG 4 cut(s) 1706, 1711, 1814, 2005
AflII CTTAAG 1 cut(s) 1025
AhdI GACNNNNNGTC 2 cut(s) 136, 543
AjnI CCWGG 2 cut(s) 1000, 1288
AjuI GAANNNNNNNTTGG 4 cut(s) 749, 781, 875, 907
AluBI AGCT 5 cut(s) 996, 1304, 1323, 1799, 2020
AluI AGCT 5 cut(s) 996, 1304, 1323, 1799, 2020
Alw21I GWGCWC 2 cut(s) 1242, 1984
Alw26I GTCTC 4 cut(s) 756, 1047, 1930, 2091
AlwI GGATC 2 cut(s) 1642, 1655
AlwNI CAGNNNCTG 1 cut(s) 996
Ama87I CYCGRG 2 cut(s) 62, 1433
AoxI GGCC 8 cut(s) 153, 1596, 1667, 1817, 2072, 2270, 2297, 2325
ApeKI GCWGC 2 cut(s) 172, 1922
ApoI RAATTY 3 cut(s) 869, 1329, 2051
ArsI GACNNNNNNTTYG 2 cut(s) 1785, 1817
AseI ATTAAT 2 cut(s) 843, 2094
Asp700I GAANNNNTTC 1 cut(s) 1425
AspLEI GCGC 1 cut(s) 1498
AspS9I GGNCC 1 cut(s) 1817
AsuC2I CCSGG 2 cut(s) 1037, 2000
AsuHPI GGTGA 8 cut(s) 251, 290, 373, 431, 823, 868, 953, 1133
AvaI CYCGRG 2 cut(s) 62, 1433
AxyI CCTNAGG 1 cut(s) 2274
BamHI GGATCC 1 cut(s) 1647
BbsI GAAGAC 4 cut(s) 135, 482, 786, 1164
Bbv12I GWGCWC 2 cut(s) 1242, 1984
BbvCI CCTCAGC 1 cut(s) 1166
BbvI GCAGC 2 cut(s) 159, 1909
BccI CCATC 6 cut(s) 184, 335, 510, 904, 1112, 1208
BceAI ACGGC 2 cut(s) 140, 918
BcgI CGANNNNNNTGC 2 cut(s) 516, 550
BciT130I CCWGG 2 cut(s) 1002, 1290
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 2 cut(s) 1037, 2000
BcoDI GTCTC 4 cut(s) 756, 1047, 1930, 2091
BfaI CTAG 3 cut(s) 791, 1158, 1341
BfmI CTRYAG 1 cut(s) 1926
BfrI CTTAAG 1 cut(s) 1025
BfuAI ACCTGC 1 cut(s) 1958
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 6 cut(s) 82, 106, 170, 173, 1670, 1923
BlsI GCNGC 6 cut(s) 83, 107, 171, 174, 1671, 1924
Bme1390I CCNGG 4 cut(s) 1002, 1037, 1290, 2000
BmeRI GACNNNNNGTC 2 cut(s) 136, 543
BmeT110I CYCGRG 2 cut(s) 62, 1433
BmgT120I GGNCC 1 cut(s) 1817
BmiI GGNNCC 3 cut(s) 1527, 1649, 1818
BmrFI CCNGG 4 cut(s) 1002, 1037, 1290, 2000
BmsI GCATC 4 cut(s) 737, 995, 1954, 2227
BpiI GAAGAC 4 cut(s) 135, 482, 786, 1164
BpmI CTGGAG 2 cut(s) 227, 2042
Bpu10I CCTNAGC 2 cut(s) 1166, 1848
BpuEI CTTGAG 1 cut(s) 1721
BpuMI CCSGG 2 cut(s) 1037, 2000
BsaBI GATNNNNATC 1 cut(s) 1692
BsaJI CCNNGG 6 cut(s) 678, 697, 1412, 1434, 1643, 1705
BsaXI ACNNNNNCTCC 2 cut(s) 1706, 1736
Bsc4I CCNNNNNNNGG 4 cut(s) 1706, 1711, 1814, 2005
Bse1I ACTGG 3 cut(s) 1670, 2065, 2260
Bse21I CCTNAGG 1 cut(s) 2274
Bse3DI GCAATG 3 cut(s) 1498, 1830, 2109
Bse8I GATNNNNATC 1 cut(s) 1692
BseBI CCWGG 2 cut(s) 1002, 1290
BseDI CCNNGG 6 cut(s) 678, 697, 1412, 1434, 1643, 1705
BseJI GATNNNNATC 1 cut(s) 1692
BseLI CCNNNNNNNGG 4 cut(s) 1706, 1711, 1814, 2005
BseMI GCAATG 3 cut(s) 1498, 1830, 2109
BseMII CTCAG 6 cut(s) 390, 471, 734, 870, 1157, 1862
BseNI ACTGG 3 cut(s) 1670, 2065, 2260
BseRI GAGGAG 6 cut(s) 296, 680, 920, 1878, 1989, 2168
BseXI GCAGC 2 cut(s) 159, 1909
BsgI GTGCAG 1 cut(s) 2146
BshFI GGCC 8 cut(s) 155, 1598, 1669, 1819, 2074, 2272, 2299, 2327
BsiHKAI GWGCWC 2 cut(s) 1242, 1984
BsiHKCI CYCGRG 2 cut(s) 62, 1433
BsiSI CCGG 2 cut(s) 1036, 1999
BslFI GGGAC 1 cut(s) 2003
BslI CCNNNNNNNGG 4 cut(s) 1706, 1711, 1814, 2005
BsmAI GTCTC 4 cut(s) 756, 1047, 1930, 2091
BsmFI GGGAC 1 cut(s) 2003
BsmI GAATGC 2 cut(s) 1221, 1425
BsnI GGCC 8 cut(s) 155, 1598, 1669, 1819, 2074, 2272, 2299, 2327
BsoBI CYCGRG 2 cut(s) 62, 1433
Bsp1286I GDGCHC 2 cut(s) 1242, 1984
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 6 cut(s) 231, 241, 565, 1015, 1647, 2176
Bsp19I CCATGG 1 cut(s) 1705
BspACI CCGC 7 cut(s) 81, 84, 105, 169, 619, 1254, 1670
BspANI GGCC 8 cut(s) 155, 1598, 1669, 1819, 2074, 2272, 2299, 2327
BspCNI CTCAG 6 cut(s) 391, 472, 735, 871, 1158, 1861
BspLI GGNNCC 3 cut(s) 1527, 1649, 1818
BspMI ACCTGC 1 cut(s) 1958
BspPI GGATC 2 cut(s) 1642, 1655
BspTI CTTAAG 1 cut(s) 1025
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 3 cut(s) 1498, 1830, 2109
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 3 cut(s) 1670, 2065, 2260
BssECI CCNNGG 6 cut(s) 678, 697, 1412, 1434, 1643, 1705
BssMI GATC 6 cut(s) 231, 241, 565, 1015, 1647, 2176
BssT1I CCWWGG 3 cut(s) 697, 1412, 1705
Bst2UI CCWGG 2 cut(s) 1002, 1290
Bst4CI ACNGT 2 cut(s) 2085, 2128
Bst6I CTCTTC 8 cut(s) 34, 129, 191, 267, 345, 456, 830, 1926
BstAFI CTTAAG 1 cut(s) 1025
BstAPI GCANNNNNTGC 3 cut(s) 720, 963, 1227
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 721, 725, 1730, 2188
BstDSI CCRYGG 1 cut(s) 1705
BstHHI GCGC 1 cut(s) 1498
BstKTI GATC 6 cut(s) 234, 244, 568, 1018, 1650, 2179
BstMAI GTCTC 4 cut(s) 756, 1047, 1930, 2091
BstMBI GATC 6 cut(s) 231, 241, 565, 1015, 1647, 2176
BstMWI GCNNNNNNNGC 3 cut(s) 720, 963, 1227
BstNI CCWGG 2 cut(s) 1002, 1290
BstNSI RCATGY 2 cut(s) 1340, 1624
BstSCI CCNGG 4 cut(s) 1000, 1035, 1288, 1998
BstSFI CTRYAG 1 cut(s) 1926
BstV1I GCAGC 2 cut(s) 159, 1909
BstV2I GAAGAC 4 cut(s) 135, 482, 786, 1164
BstX2I RGATCY 1 cut(s) 1647
BstYI RGATCY 1 cut(s) 1647
Bsu36I CCTNAGG 1 cut(s) 2274
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 8 cut(s) 155, 1598, 1669, 1819, 2074, 2272, 2299, 2327
BtgI CCRYGG 1 cut(s) 1705
BtsIMutI CAGTG 2 cut(s) 1677, 2072
BveI ACCTGC 1 cut(s) 1958
Cac8I GCNNGC 4 cut(s) 721, 725, 1730, 2188
CaiI CAGNNNCTG 1 cut(s) 996
CfoI GCGC 1 cut(s) 1498
Cfr13I GGNCC 1 cut(s) 1817
CseI GACGC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 43, 952, 2003
CspCI CAANNNNNGTGG 2 cut(s) 1666, 1701
CviAII CATG 9 cut(s) 569, 1337, 1371, 1537, 1574, 1621, 1706, 1886, 2225
CviQI GTAC 3 cut(s) 43, 952, 2003
DpnI GATC 6 cut(s) 233, 243, 567, 1017, 1649, 2178
DpnII GATC 6 cut(s) 231, 241, 565, 1015, 1647, 2176
DriI GACNNNNNGTC 2 cut(s) 136, 543
EaeI YGGCCR 2 cut(s) 153, 1667
Eam1104I CTCTTC 8 cut(s) 34, 129, 191, 267, 345, 456, 830, 1926
Eam1105I GACNNNNNGTC 2 cut(s) 136, 543
EarI CTCTTC 8 cut(s) 34, 129, 191, 267, 345, 456, 830, 1926
Eco130I CCWWGG 3 cut(s) 697, 1412, 1705
Eco147I AGGCCT 3 cut(s) 2272, 2299, 2327
Eco57I CTGAAG 1 cut(s) 1914
Eco81I CCTNAGG 1 cut(s) 2274
Eco88I CYCGRG 2 cut(s) 62, 1433
EcoRI GAATTC 1 cut(s) 2051
EcoRII CCWGG 2 cut(s) 1000, 1288
EcoT14I CCWWGG 3 cut(s) 697, 1412, 1705
ErhI CCWWGG 3 cut(s) 697, 1412, 1705
FaeI CATG 9 cut(s) 572, 1340, 1374, 1540, 1577, 1624, 1709, 1889, 2228
FalI AAGNNNNNCTT 2 cut(s) 1887, 1919
FaqI GGGAC 1 cut(s) 2003
FatI CATG 9 cut(s) 568, 1336, 1370, 1536, 1573, 1620, 1705, 1885, 2224
FauNDI CATATG 1 cut(s) 1837
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 2 cut(s) 140, 536
Fnu4HI GCNGC 6 cut(s) 82, 106, 170, 173, 1670, 1923
Fsp4HI GCNGC 6 cut(s) 82, 106, 170, 173, 1670, 1923
FspBI CTAG 3 cut(s) 791, 1158, 1341
GlaI GCGC 1 cut(s) 1497
GluI GCNGC 6 cut(s) 82, 106, 170, 173, 1670, 1923
GsuI CTGGAG 2 cut(s) 227, 2042
HaeIII GGCC 8 cut(s) 155, 1598, 1669, 1819, 2074, 2272, 2299, 2327
HapII CCGG 2 cut(s) 1036, 1999
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 1498
Hin1II CATG 9 cut(s) 572, 1340, 1374, 1540, 1577, 1624, 1709, 1889, 2228
Hin6I GCGC 1 cut(s) 1496
HinP1I GCGC 1 cut(s) 1496
HincII GTYRAC 3 cut(s) 141, 537, 548
HindII GTYRAC 3 cut(s) 141, 537, 548
HinfI GANTC 8 cut(s) 137, 142, 148, 289, 395, 757, 814, 1938
HpaII CCGG 2 cut(s) 1036, 1999
HphI GGTGA 8 cut(s) 251, 290, 373, 431, 823, 868, 953, 1133
Hpy166II GTNNAC 4 cut(s) 141, 364, 537, 548
Hpy188III TCNNGA 5 cut(s) 206, 754, 761, 1850, 2170
Hpy8I GTNNAC 4 cut(s) 141, 364, 537, 548
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 8 cut(s) 94, 245, 881, 1054, 1241, 1573, 2239, 2257
HpyCH4III ACNGT 2 cut(s) 2085, 2128
HpyF10VI GCNNNNNNNGC 3 cut(s) 720, 963, 1227
Hsp92II CATG 9 cut(s) 572, 1340, 1374, 1540, 1577, 1624, 1709, 1889, 2228
HspAI GCGC 1 cut(s) 1496
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 6 cut(s) 231, 241, 565, 1015, 1647, 2176
LmnI GCTCC 2 cut(s) 519, 2023
Lsp1109I GCAGC 2 cut(s) 159, 1909
LweI GCATC 4 cut(s) 737, 995, 1954, 2227
MaeI CTAG 3 cut(s) 791, 1158, 1341
MaeIII GTNAC 3 cut(s) 34, 1781, 1897
MalI GATC 6 cut(s) 233, 243, 567, 1017, 1649, 2178
MbiI CCGCTC 1 cut(s) 81
MboI GATC 6 cut(s) 231, 241, 565, 1015, 1647, 2176
MflI RGATCY 1 cut(s) 1647
MhlI GDGCHC 2 cut(s) 1242, 1984
MlyI GAGTC 4 cut(s) 136, 142, 146, 1932
MmeI TCCRAC 3 cut(s) 46, 158, 1778
MroXI GAANNNNTTC 1 cut(s) 1425
MseI TTAA 8 cut(s) 489, 843, 1026, 1560, 1659, 1872, 2094, 2341
MspCI CTTAAG 1 cut(s) 1025
MspI CCGG 2 cut(s) 1036, 1999
MspR9I CCNGG 4 cut(s) 1002, 1037, 1290, 2000
Mva1269I GAATGC 2 cut(s) 1221, 1425
MvaI CCWGG 2 cut(s) 1002, 1290
MwoI GCNNNNNNNGC 3 cut(s) 720, 963, 1227
NciI CCSGG 2 cut(s) 1037, 2000
NcoI CCATGG 1 cut(s) 1705
NdeI CATATG 1 cut(s) 1837
NdeII GATC 6 cut(s) 231, 241, 565, 1015, 1647, 2176
NlaIII CATG 9 cut(s) 572, 1340, 1374, 1540, 1577, 1624, 1709, 1889, 2228
NlaIV GGNNCC 3 cut(s) 1527, 1649, 1818
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 2 cut(s) 1781, 1897
NspI RCATGY 2 cut(s) 1340, 1624
PaqCI CACCTGC 1 cut(s) 1958
PceI AGGCCT 3 cut(s) 2272, 2299, 2327
PctI GAATGC 2 cut(s) 1221, 1425
PdmI GAANNNNTTC 1 cut(s) 1425
PfeI GAWTC 4 cut(s) 289, 395, 757, 814
PfoI TCCNGGA 3 cut(s) 1000, 1035, 1288
PkrI GCNGC 6 cut(s) 83, 107, 171, 174, 1671, 1924
PleI GAGTC 4 cut(s) 136, 142, 145, 1932
PpsI GAGTC 4 cut(s) 136, 142, 145, 1932
PshBI ATTAAT 2 cut(s) 843, 2094
Psp6I CCWGG 2 cut(s) 1000, 1288
PspGI CCWGG 2 cut(s) 1000, 1288
PspN4I GGNNCC 3 cut(s) 1527, 1649, 1818
PspPI GGNCC 1 cut(s) 1817
PsrI GAACNNNNNNTAC 2 cut(s) 1995, 2027
PstNI CAGNNNCTG 1 cut(s) 996
PsuI RGATCY 1 cut(s) 1647
RsaI GTAC 3 cut(s) 44, 953, 2004
RsaNI GTAC 3 cut(s) 43, 952, 2003
SalI GTCGAC 2 cut(s) 139, 535
SaqAI TTAA 8 cut(s) 489, 843, 1026, 1560, 1659, 1872, 2094, 2341
SatI GCNGC 6 cut(s) 82, 106, 170, 173, 1670, 1923
Sau3AI GATC 6 cut(s) 231, 241, 565, 1015, 1647, 2176
Sau96I GGNCC 1 cut(s) 1817
SchI GAGTC 4 cut(s) 136, 142, 146, 1932
ScrFI CCNGG 4 cut(s) 1002, 1037, 1290, 2000
SduI GDGCHC 2 cut(s) 1242, 1984
SfaNI GCATC 4 cut(s) 737, 995, 1954, 2227
SfcI CTRYAG 1 cut(s) 1926
SmlI CTYRAG 2 cut(s) 1025, 1736
SmoI CTYRAG 2 cut(s) 1025, 1736
SseBI AGGCCT 3 cut(s) 2272, 2299, 2327
SsiI CCGC 7 cut(s) 81, 84, 105, 169, 619, 1254, 1670
SspMI CTAG 3 cut(s) 791, 1158, 1341
StuI AGGCCT 3 cut(s) 2272, 2299, 2327
StyD4I CCNGG 4 cut(s) 1000, 1035, 1288, 1998
StyI CCWWGG 3 cut(s) 697, 1412, 1705
TaaI ACNGT 2 cut(s) 2085, 2128
TaqI TCGA 9 cut(s) 140, 244, 536, 760, 974, 981, 1116, 1541, 2121
TatI WGTACW 2 cut(s) 42, 951
TauI GCSGC 4 cut(s) 84, 108, 172, 1672
TfiI GAWTC 4 cut(s) 289, 395, 757, 814
Tru1I TTAA 8 cut(s) 489, 843, 1026, 1560, 1659, 1872, 2094, 2341
Tru9I TTAA 8 cut(s) 489, 843, 1026, 1560, 1659, 1872, 2094, 2341
TscAI CASTG 2 cut(s) 1684, 2072
TseFI GTSAC 2 cut(s) 1781, 1897
TseI GCWGC 2 cut(s) 172, 1922
Tsp45I GTSAC 2 cut(s) 1781, 1897
TspDTI ATGAA 8 cut(s) 17, 468, 474, 648, 864, 881, 1359, 2213
TspRI CASTG 2 cut(s) 1684, 2072
Vha464I CTTAAG 1 cut(s) 1025
VspI ATTAAT 2 cut(s) 843, 2094
XapI RAATTY 3 cut(s) 869, 1329, 2051
XceI RCATGY 2 cut(s) 1340, 1624
XcmI CCANNNNNNNNNTGG 1 cut(s) 1606
XmiI GTMKAC 2 cut(s) 140, 536
XmnI GAANNNNTTC 1 cut(s) 1425
XspI CTAG 3 cut(s) 791, 1158, 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.