Rh3BG115800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000280
Physical Location & Seq
Forward (+)
9543702 .. 9544067
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG115800.1

Sequence Viewer

Length: 366 bp
ATGGGGAAGAGTGTTCTGGAGGGTTTAGAGCGTAAAGATTTGATCTTTGGTGATCGAATTGAAGGGCAAAAGGGGAAAGGCGAAGAGGGTGAGGAGAAGAATCAAGGAAATGGGGTTTCTGATGTGGGTTTTGGCAAAGAGGGAGTGAGTGATGGAATTGAAGAGGGTTTGGTGAAGAAGAAGAAATGTGGTAAAAAGGGTACGGAATCTGAGAGGTTTGGAGAAAATGGTGATGTGGGTTTTGGTAAAGAGGGAGTGAGAGATGAAAATGAAGAGGGTTTAGTGAAGACTGAGCATGTTAATGGGGTTGTGGAGAAGAATGGAAAATGGAGCAGAGCAGATGTGTCATCAATGTCAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.02

Weight (kDa)

5.12

Isoelectric Point (pI)

23.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 2 cut(s) 62, 161
AsuHPI GGTGA 4 cut(s) 62, 101, 184, 242
BbsI GAAGAC 1 cut(s) 293
BccI CCATC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 38
BseMII CTCAG 2 cut(s) 201, 282
BseRI GAGGAG 1 cut(s) 107
Bsp143I GATC 2 cut(s) 42, 52
BspCNI CTCAG 2 cut(s) 202, 283
BssMI GATC 2 cut(s) 42, 52
Bst6I CTCTTC 4 cut(s) 2, 78, 156, 267
BstDEI CTNAG 2 cut(s) 210, 291
BstKTI GATC 2 cut(s) 45, 55
BstMBI GATC 2 cut(s) 42, 52
BstNSI RCATGY 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 296
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 210, 291
DpnI GATC 2 cut(s) 44, 54
DpnII GATC 2 cut(s) 42, 52
Eam1104I CTCTTC 4 cut(s) 2, 78, 156, 267
EarI CTCTTC 4 cut(s) 2, 78, 156, 267
FaeI CATG 1 cut(s) 299
FaiI YATR 1 cut(s) 297
FatI CATG 1 cut(s) 295
GsuI CTGGAG 1 cut(s) 38
Hin1II CATG 1 cut(s) 299
HinfI GANTC 2 cut(s) 100, 206
HphI GGTGA 4 cut(s) 62, 101, 184, 242
Hpy188I TCNGA 3 cut(s) 121, 211, 358
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 210, 291
Hsp92II CATG 1 cut(s) 299
Kzo9I GATC 2 cut(s) 42, 52
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 1 cut(s) 2
MalI GATC 2 cut(s) 44, 54
MboI GATC 2 cut(s) 42, 52
MluCI AATT 2 cut(s) 57, 156
MnlI CCTC 8 cut(s) 13, 79, 85, 133, 157, 207, 244, 268
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 300
NdeII GATC 2 cut(s) 42, 52
NlaIII CATG 1 cut(s) 299
NspI RCATGY 1 cut(s) 299
PfeI GAWTC 2 cut(s) 100, 206
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 2 cut(s) 42, 52
SetI ASST 1 cut(s) 218
SgeI CNNG 3 cut(s) 29, 116, 308
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 57, 156
TaqI TCGA 1 cut(s) 55
TasI AATT 2 cut(s) 57, 156
TfiI GAWTC 2 cut(s) 100, 206
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TspDTI ATGAA 2 cut(s) 279, 285
TspGWI ACGGA 1 cut(s) 218
XceI RCATGY 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.