MD07G1099600.v1.1

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000280
Physical Location & Seq
Reverse (-)
10973691 .. 10988237
14547 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1099600.v1.1.491

Sequence Viewer

Length: 3702 bp
ATGGGGAAAAACCCAGAAACAAGCTTGGGGGGAAATGGCGGTGGTTCGGAGAAAGGTGAGCGATTTCTGGGAATTCAGAGTGATGGAAAAAAAGGGAGGAAGCGTGGTAGGAAGAGAGGCAGAGATTTGGCGGGTAAAGGTGATTGGGTAGCTCCAACTTTGAAGAAACATGGCGGGTCGTGCAGGAGGAGGGCTAGATATTTGGTGGCTGAGAAAGATGTGCAAGGTGGTGGCGGAGGAAGCGAAAATGCCCGAACCGGTAGTGCAAATGGGGCTCGGAATGGTGAGAAATGGGATCCTACAGTGGGTCTGGGGAACGAGGAAGATTGTGGGATTGGTGTGTTGGATTTGAAAGAAGGTGAAGGACAAGGGGGTAGTGGTATTGGTGGTGAGGAATTTCATGGAGCTTTGGGTGAGGAACGCGGTACAAGTGAGAAAGTCAAGGGGTCTGCAAGGGGAGTCGAGAAGTCTGTGAGTGCAGAATGCGTAAATAAGCAGAGTTCAAAATTTGTTCAGGAGATGTCTTTGTCTTGCCATCAATGTCAGAGGAATGACAAGGGTAGGGTTGTTCGGTGCAGATTGTGTAAAAGAAAGCGGTTTTGTATCCCTTGCATACAATCTTGGTATCCTCAAATGTCAGAGGATGTCATTGCTGAGGCTTGTCCTGTATGCCGTGGCAATTGCAATTGCACAGTATGCTTACATAAACCTTCTCAGTATTTGAGGAACCTTGAATTCAACATTTCCGAAGATGAAAGGGTTGAGCACTCTATGTATTTGGTTCAAACATTGCTTCCATTCTTGAAAAGGATTAATGCTGAACAAATGACTGAGATGGACATGGAGGCTACAAGACAAGGGCTTTCTATTTCAGAGCTAAAGATACAAAGTTCAGACTGCCTTGAGGATGAGCGTGCATACTGCAACAACTGCAAAACTTCTATTGTTGATTTACACAGAAGCTGTCCTCTATGCTCATATGATCTTTGCCTCATCTGTTGCCGAGAAATTCGAGATGGACGCCTGCTGGGAGCTAGAGAGGAAGTGATTTTTAAGTATATCAATCAGGGCCTAGACTATTTGCATGGTGGAAAAGGGGATACTGTAGATCTGCCTTCTGAAGTTAACACCAAGTTTCATGCAGGGTCAACATATGACTGGAAAGCAAATTCAGATGGAAGCATTGTTTGCCCCCCAGAAAACATGGATGGTTGCGGTCATAGTTTTCTAGAATTGAGATGCATGTTTGCTGAAAATCACGTCAGAGAGTTGGTGAAGAAAGCTGAAGGAATCGCTCAAACTTACAAACTTATGCATGTGGCTGGAACTTCTGCACATCAGTGTTCATGTTGCAACTCTGTCAGTGGTGTTGACATGAGCAGCAATAAGTTAAGGGAAGCAGCTTCTCGAGAGGGATCGGATGACAACTATTTGTACTGTCCAAGAGCTACTGATATTCAACATGAAGATTTTAAGCGTTTTCAATGTCATTGGATCAGAGGTGAGCCTGTGATTGTGAGCAATGTGCTTGACACTGCATCAGGTTTAAGCTGGGAACCGTCGGTCATGTGGCGCGCTTGTCGTCAGAAACATACTAGGCATGATAAACTGAAAAATAATAGGCATGTCAATCAAGTGAAGGTCATTGATTGCTTGGATTGGTGTGAGGTGAACATTTTGACAAATACTACTGAAGTGACCCTTACTCCCAAGCAAATGGAGACTATGAAAAGGTTAAAAAAGAAGCACATTGAACAAGACAGAAGGGAAATTTTTGGAAATTTTCAGACCGTGGAAGAAAATGTTGATAGTAACCAGCCTGGCGATTCTGGTGTGTCTAGGTTGAATGGTGAAAGTTTTTCAGAGGGTTCCAAGTCCGAAAAGAATATAGTGGGTGGTGCTTTATGGGATATTTTCCGGCGTGAAGATGTTCCTAAGCTGAACGATTATCTCCAGAAGCACTGCAAGGAATTCAGGCATACTTTCTGTTGTCCAGTGCAGCAGGTTATTCATCCCATACATGACCAAACCTTTTATCTGACAATGCAGCACAAAAGGAAGCTGAAGGAAGAATATGGGATTGAACCGTGGACATTTATCCAGAAACTTGGAGATGCTGTTTTAATTCCTGCAGGATGTCCACACCAAGTGAGAAACTTGAAGCCATGCATTAAAGTTGCACTTGAATTTGTCTCGCCTGAAAATGTTGGTGAGTGCATTCGGTTGACCGATGAGTTCCGCACACTTCCAAAAAATCACAGGGCTAAAGAGGACAAATTGGAGGTAAAGAAAATGATTTTGCATTCTGTCCATCAGGTTGTGGAGAAGTTGGATACAAATATGAGACATGGATTGGGAAATGAAGCTGTAGAAAGACCAAAAAAAGGAGAGAAGAGGAGGAAGTCGAAGCTGTTGACAAGAAGGCCACGGAAGGAAGGGGTGAAGAATAGGAGGTCCAAAGTTGTTGAGGAGCAGCATTCACTGCGCCCTCTTGAACAATGCAGAAATTTACGTGCATGGAGAGAGGAAGAATCTTCCGGACAACAAGAAAGAATGGAAAACGAGGAGGTTCAAGTTGTAGAGGAGCGTTCACTGCCCCCTATTGAACAATGCAGAAATGTGGATGCATGGAGAGAGGAAGAATCTTCCAGACAACAAGAAGGAATGGAAATTGAGGTTCAAGTTGTTTTGGAGCAGCAGTCTTCACAGCCACCTGTTGAACTAGGTAGAATTGAACATGCATGCAGAAGGGAAGAAGTTGGAGGACAGACAGAAGGAAGTGGTGATGAGGAAGTGGCCCACGGATCCGAGGAGCAGCGATTCTTACTTCCTGCGCTGCCCCCTCTTGAACAATGCATAAATGTGCATGAGGAAGAATCTTCCGGACAACAAAAAGGAATGGAAATGGAGGAGGTTCAAGTTGTTGAGGAGCAGCGTGCAATACCCCCTCTTGAACAATGCAGAAATGTGCATGCATGGAGAGAGGAAGAATCTTCCGGACAACAAGAAGGAATGGAAATTGAGGAGGTTCAAGTTGTTTTGGAGCAGCACACTTCACAGCCACCTGTTGAACTAGGTAGAATAGAAAAGGCATGCAGAAGGGAAGAAGCTGGAGGACAGACAGAAGGAAGTGGTGATGAGGAAGAGGCGCAAGGATCCGAGGAGCAGCGATTCTTACTTCCTGCACATTCCACTGTTCAAGAGCGAAGCATTGGACATGCATGGAGAGAGCTAGAAGGTGGAGGACAACAACAAAAAGGAAGGGCAAAAGGGGAAGAGTCAGTTGCGAAGAAGCCTCCACAATCATCACAGTCTGAAGAAGAGGATGATGTGATTATTGTGGAGAAGCCTCCACAATCATCAGAGTTTGCAGAAGGAGATGATGACGTGGTTATTGTGGAGAAGCCTTCACAATCATCACATTCTCGAGTCTCTAGACGCACTAATGTTGGTCTTGTTACAATGGTGAAGTATCTCGATAACCTCACTGAGCGCATTACACATTTTGAACAGACAACTGAACAGAGGGATAGAATACAGAATCCTGAATTCCAGCATATCCGTTCAGAGCTTTTGACTTTAGCTTCCCATCTTGGTTACACAACTCACCCGAGAGAGCCTGATATCCCACTACAATTGTCTCAGTCACCAAAAGAAGGCTGTCCGCCTCTCTTTGTTTACCGAAGAAGATCCACCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

1234

Amino Acids

139.42

Weight (kDa)

5.98

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 173 - 238 1.2e-07 Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC PF02373 627 - 730 8.7e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1993
AccII CGCG 2 cut(s) 423, 1575
AccIII TCCGGA 3 cut(s) 2537, 2882, 2996
AciI CCGC 9 cut(s) 39, 131, 174, 234, 423, 595, 1215, 2239, 3665
AclWI GGATC 9 cut(s) 290, 303, 1423, 1502, 2799, 2812, 3150, 3163, 3684
AcuI CTGAAG 5 cut(s) 1140, 1305, 1713, 2084, 3336
AcyI GRCGYC 1 cut(s) 1021
AdeI CACNNNGTG 1 cut(s) 2149
AfaI GTAC 2 cut(s) 427, 1436
AfiI CCNNNNNNNGG 3 cut(s) 305, 2384, 3656
AgeI ACCGGT 1 cut(s) 257
AjiI CACGTC 2 cut(s) 1261, 3388
AjnI CCWGG 1 cut(s) 1819
AleI CACNNNNGTG 1 cut(s) 1339
Alw21I GWGCWC 1 cut(s) 768
Alw26I GTCTC 5 cut(s) 1715, 2197, 2338, 3436, 3645
AlwI GGATC 9 cut(s) 290, 303, 1423, 1502, 2799, 2812, 3150, 3163, 3684
AlwNI CAGNNNCTG 1 cut(s) 963
Ama87I CYCGRG 3 cut(s) 1407, 3426, 3610
Aor13HI TCCGGA 3 cut(s) 2537, 2882, 2996
AoxI GGCC 3 cut(s) 1069, 2423, 2796
AseI ATTAAT 1 cut(s) 813
AsiGI ACCGGT 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 1929
AspLEI GCGC 6 cut(s) 1575, 1577, 2487, 2836, 3151, 3495
AspS9I GGNCC 3 cut(s) 1069, 2454, 2797
AsuC2I CCSGG 1 cut(s) 3697
AvaI CYCGRG 3 cut(s) 1407, 3426, 3610
AvaII GGWCC 1 cut(s) 2454
BamHI GGATCC 3 cut(s) 295, 2804, 3155
BanII GRGCYC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 2694
Bbv12I GWGCWC 1 cut(s) 768
BbvCI CCTCAGC 1 cut(s) 654
BccI CCATC 8 cut(s) 77, 543, 829, 1010, 1169, 1202, 2319, 3597
BceAI ACGGC 1 cut(s) 657
BciT130I CCWGG 1 cut(s) 1821
BciVI GTATCC 4 cut(s) 614, 636, 1093, 2326
BcnI CCSGG 1 cut(s) 3697
BcoDI GTCTC 5 cut(s) 1715, 2197, 2338, 3436, 3645
BfmI CTRYAG 4 cut(s) 300, 1104, 2130, 2367
BfuAI ACCTGC 1 cut(s) 1993
BfuI GTATCC 4 cut(s) 614, 636, 1093, 2326
BglII AGATCT 1 cut(s) 1108
Bme1390I CCNGG 2 cut(s) 1821, 3697
Bme18I GGWCC 1 cut(s) 2454
BmeT110I CYCGRG 3 cut(s) 1407, 3426, 3610
BmgBI CACGTC 2 cut(s) 1261, 3388
BmgT120I GGNCC 3 cut(s) 1069, 2454, 2797
BmiI GGNNCC 6 cut(s) 297, 728, 1557, 1870, 2806, 3157
BmrFI CCNGG 2 cut(s) 1821, 3697
BmsI GCATC 4 cut(s) 1229, 1547, 2104, 2614
BpiI GAAGAC 1 cut(s) 2694
BpmI CTGGAG 2 cut(s) 1937, 3132
Bpu10I CCTNAGC 2 cut(s) 654, 1935
BpuEI CTTGAG 1 cut(s) 923
BpuMI CCSGG 1 cut(s) 3697
BsaAI YACGTR 1 cut(s) 2513
BsaHI GRCGYC 1 cut(s) 1021
BsaJI CCNNGG 7 cut(s) 673, 1791, 2087, 2426, 2800, 2808, 3159
BsaWI WCCGGW 4 cut(s) 257, 2537, 2882, 2996
BsaXI ACNNNNNCTCC 8 cut(s) 88, 118, 1690, 1720, 2103, 2133, 2684, 2714
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 2384, 3656
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 1163, 1994
Bse3DI GCAATG 3 cut(s) 648, 788, 1528
BseAI TCCGGA 3 cut(s) 2537, 2882, 2996
BseBI CCWGG 1 cut(s) 1821
BseDI CCNNGG 7 cut(s) 673, 1791, 2087, 2426, 2800, 2808, 3159
BseGI GGATG 8 cut(s) 649, 913, 1213, 1426, 2011, 2141, 2629, 3331
BseLI CCNNNNNNNGG 3 cut(s) 305, 2384, 3656
BseMI GCAATG 3 cut(s) 648, 788, 1528
BseMII CTCAG 6 cut(s) 201, 645, 728, 822, 3480, 3656
BseNI ACTGG 2 cut(s) 1163, 1994
BsePI GCGCGC 1 cut(s) 1573
BseYI CCCAGC 2 cut(s) 1027, 1551
BsgI GTGCAG 6 cut(s) 202, 498, 595, 1317, 2018, 3168
Bsh1236I CGCG 2 cut(s) 423, 1575
BshFI GGCC 3 cut(s) 1071, 2425, 2798
BshTI ACCGGT 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 768
BsiHKCI CYCGRG 3 cut(s) 1407, 3426, 3610
BsiSI CCGG 6 cut(s) 258, 1918, 2538, 2883, 2997, 3696
BslI CCNNNNNNNGG 3 cut(s) 305, 2384, 3656
BsmAI GTCTC 5 cut(s) 1715, 2197, 2338, 3436, 3645
BsmI GAATGC 4 cut(s) 488, 2217, 2302, 2476
BsnI GGCC 3 cut(s) 1071, 2425, 2798
BsoBI CYCGRG 3 cut(s) 1407, 3426, 3610
Bsp1286I GDGCHC 2 cut(s) 277, 768
Bsp13I TCCGGA 3 cut(s) 2537, 2882, 2996
Bsp143I GATC 8 cut(s) 295, 982, 1108, 1415, 1494, 2804, 3155, 3689
BspACI CCGC 9 cut(s) 39, 131, 174, 234, 423, 595, 1215, 2239, 3665
BspANI GGCC 3 cut(s) 1071, 2425, 2798
BspCNI CTCAG 6 cut(s) 202, 646, 727, 823, 3481, 3655
BspEI TCCGGA 3 cut(s) 2537, 2882, 2996
BspFNI CGCG 2 cut(s) 423, 1575
BspLI GGNNCC 6 cut(s) 297, 728, 1557, 1870, 2806, 3157
BspMAI CTGCAG 1 cut(s) 2134
BspMI ACCTGC 1 cut(s) 1993
BspPI GGATC 9 cut(s) 290, 303, 1423, 1502, 2799, 2812, 3150, 3163, 3684
BsrDI GCAATG 3 cut(s) 648, 788, 1528
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 2 cut(s) 1163, 1994
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 7 cut(s) 673, 1791, 2087, 2426, 2800, 2808, 3159
BssHII GCGCGC 1 cut(s) 1573
BssMI GATC 8 cut(s) 295, 982, 1108, 1415, 1494, 2804, 3155, 3689
BssNI GRCGYC 1 cut(s) 1021
Bst2UI CCWGG 1 cut(s) 1821
Bst4CI ACNGT 9 cut(s) 304, 694, 1105, 1439, 1560, 1792, 2088, 3196, 3312
Bst6I CTCTTC 5 cut(s) 107, 2387, 3138, 3270, 3315
BstACI GRCGYC 1 cut(s) 1021
BstAPI GCANNNNNTGC 4 cut(s) 696, 930, 1188, 2482
BstBAI YACGTR 1 cut(s) 2513
BstC8I GCNNGC 7 cut(s) 915, 1025, 1575, 2743, 2937, 2973, 3094
BstDEI CTNAG 7 cut(s) 210, 654, 714, 831, 1935, 3489, 3642
BstDSI CCRYGG 5 cut(s) 673, 1791, 2087, 2426, 2800
BstF5I GGATG 8 cut(s) 649, 913, 1213, 1426, 2011, 2141, 2629, 3331
BstFNI CGCG 2 cut(s) 423, 1575
BstHHI GCGC 6 cut(s) 1575, 1577, 2487, 2836, 3151, 3495
BstKTI GATC 8 cut(s) 298, 985, 1111, 1418, 1497, 2807, 3158, 3692
BstMAI GTCTC 5 cut(s) 1715, 2197, 2338, 3436, 3645
BstMBI GATC 8 cut(s) 295, 982, 1108, 1415, 1494, 2804, 3155, 3689
BstMWI GCNNNNNNNGC 8 cut(s) 180, 240, 272, 696, 930, 1188, 2482, 2593
BstNI CCWGG 1 cut(s) 1821
BstNSI RCATGY 8 cut(s) 1246, 1319, 1628, 2741, 2745, 2975, 3096, 3221
BstSCI CCNGG 2 cut(s) 1819, 3695
BstSFI CTRYAG 4 cut(s) 300, 1104, 2130, 2367
BstUI CGCG 2 cut(s) 423, 1575
BstV2I GAAGAC 1 cut(s) 2694
BstX2I RGATCY 5 cut(s) 295, 1108, 2804, 3155, 3689
BstXI CCANNNNNNTGG 2 cut(s) 1717, 2108
BstYI RGATCY 5 cut(s) 295, 1108, 2804, 3155, 3689
BsuI GTATCC 4 cut(s) 614, 636, 1093, 2326
BsuRI GGCC 3 cut(s) 1071, 2425, 2798
BtgI CCRYGG 5 cut(s) 673, 1791, 2087, 2426, 2800
BtrI CACGTC 2 cut(s) 1261, 3388
BtsCI GGATG 8 cut(s) 649, 913, 1213, 1426, 2011, 2141, 2629, 3331
BtsI GCAGTG 4 cut(s) 1533, 1960, 2480, 2591
BveI ACCTGC 1 cut(s) 1993
Cac8I GCNNGC 7 cut(s) 915, 1025, 1575, 2743, 2937, 2973, 3094
CaiI CAGNNNCTG 1 cut(s) 963
CfoI GCGC 6 cut(s) 1575, 1577, 2487, 2836, 3151, 3495
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 3 cut(s) 1069, 2454, 2797
CseI GACGC 2 cut(s) 1029, 3447
Csp6I GTAC 2 cut(s) 426, 1435
CspAI ACCGGT 1 cut(s) 257
CspCI CAANNNNNGTGG 2 cut(s) 3618, 3653
CviQI GTAC 2 cut(s) 426, 1435
DdeI CTNAG 7 cut(s) 210, 654, 714, 831, 1935, 3489, 3642
DpnI GATC 8 cut(s) 297, 984, 1110, 1417, 1496, 2806, 3157, 3691
DpnII GATC 8 cut(s) 295, 982, 1108, 1415, 1494, 2804, 3155, 3689
DraIII CACNNNGTG 1 cut(s) 2149
Eam1104I CTCTTC 5 cut(s) 107, 2387, 3138, 3270, 3315
EarI CTCTTC 5 cut(s) 107, 2387, 3138, 3270, 3315
EciI GGCGGA 2 cut(s) 249, 3654
Eco24I GRGCYC 1 cut(s) 277
Eco32I GATATC 1 cut(s) 3625
Eco47I GGWCC 1 cut(s) 2454
Eco57I CTGAAG 5 cut(s) 1140, 1305, 1713, 2084, 3336
Eco88I CYCGRG 3 cut(s) 1407, 3426, 3610
EcoO109I RGGNCCY 1 cut(s) 1069
EcoRI GAATTC 4 cut(s) 72, 734, 1970, 3548
EcoRII CCWGG 1 cut(s) 1819
EcoRV GATATC 1 cut(s) 3625
EcoT22I ATGCAT 8 cut(s) 1244, 1317, 2171, 2629, 2743, 2858, 2977, 3223
EcoT38I GRGCYC 1 cut(s) 277
FalI AAGNNNNNCTT 4 cut(s) 1686, 1718, 2166, 2198
FauI CCCGC 2 cut(s) 124, 167
FauNDI CATATG 2 cut(s) 979, 1153
FokI GGATG 8 cut(s) 656, 920, 1220, 1433, 1998, 2148, 2636, 3338
FriOI GRGCYC 1 cut(s) 277
GlaI GCGC 6 cut(s) 1574, 1576, 2486, 2835, 3150, 3494
GsaI CCCAGC 2 cut(s) 1031, 1555
GsuI CTGGAG 2 cut(s) 1937, 3132
HaeIII GGCC 3 cut(s) 1071, 2425, 2798
HapII CCGG 6 cut(s) 258, 1918, 2538, 2883, 2997, 3696
HgaI GACGC 2 cut(s) 1029, 3447
HhaI GCGC 6 cut(s) 1575, 1577, 2487, 2836, 3151, 3495
Hin1I GRCGYC 1 cut(s) 1021
Hin6I GCGC 6 cut(s) 1573, 1575, 2485, 2834, 3149, 3493
HinP1I GCGC 6 cut(s) 1573, 1575, 2485, 2834, 3149, 3493
HincII GTYRAC 5 cut(s) 1126, 1149, 1372, 2226, 2415
HindII GTYRAC 5 cut(s) 1126, 1149, 1372, 2226, 2415
HindIII AAGCTT 1 cut(s) 22
HpaI GTTAAC 1 cut(s) 1126
HpaII CCGG 6 cut(s) 258, 1918, 2538, 2883, 2997, 3696
Hpy99I CGWCG 1 cut(s) 1564
HpyCH4III ACNGT 9 cut(s) 304, 694, 1105, 1439, 1560, 1792, 2088, 3196, 3312
HpyCH4IV ACGT 3 cut(s) 1260, 2512, 3387
HpyF10VI GCNNNNNNNGC 8 cut(s) 180, 240, 272, 696, 930, 1188, 2482, 2593
HpyF3I CTNAG 7 cut(s) 210, 654, 714, 831, 1935, 3489, 3642
HpySE526I ACGT 3 cut(s) 1260, 2512, 3387
Hsp92I GRCGYC 1 cut(s) 1021
HspAI GCGC 6 cut(s) 1573, 1575, 2485, 2834, 3149, 3493
Kpn2I TCCGGA 3 cut(s) 2537, 2882, 2996
KspAI GTTAAC 1 cut(s) 1126
Kzo9I GATC 8 cut(s) 295, 982, 1108, 1415, 1494, 2804, 3155, 3689
LweI GCATC 4 cut(s) 1229, 1547, 2104, 2614
MaeII ACGT 3 cut(s) 1260, 2512, 3387
MaeIII GTNAC 5 cut(s) 1696, 1811, 3457, 3596, 3645
MalI GATC 8 cut(s) 297, 984, 1110, 1417, 1496, 2806, 3157, 3691
MboI GATC 8 cut(s) 295, 982, 1108, 1415, 1494, 2804, 3155, 3689
MfeI CAATTG 3 cut(s) 679, 685, 3635
MflI RGATCY 5 cut(s) 295, 1108, 2804, 3155, 3689
MhlI GDGCHC 2 cut(s) 277, 768
MlyI GAGTC 3 cut(s) 468, 3287, 3438
MmeI TCCRAC 4 cut(s) 179, 324, 2310, 2740
Mph1103I ATGCAT 8 cut(s) 1244, 1317, 2171, 2629, 2743, 2858, 2977, 3223
MroI TCCGGA 3 cut(s) 2537, 2882, 2996
MroXI GAANNNNTTC 1 cut(s) 1929
MseI TTAA 9 cut(s) 813, 1053, 1125, 1391, 1473, 1547, 1736, 2123, 2172
MslI CAYNNNNRTG 2 cut(s) 1339, 2861
MspI CCGG 6 cut(s) 258, 1918, 2538, 2883, 2997, 3696
MspR9I CCNGG 2 cut(s) 1821, 3697
MunI CAATTG 3 cut(s) 679, 685, 3635
Mva1269I GAATGC 4 cut(s) 488, 2217, 2302, 2476
MvaI CCWGG 1 cut(s) 1821
MvnI CGCG 2 cut(s) 423, 1575
MwoI GCNNNNNNNGC 8 cut(s) 180, 240, 272, 696, 930, 1188, 2482, 2593
NciI CCSGG 1 cut(s) 3697
NdeI CATATG 2 cut(s) 979, 1153
NdeII GATC 8 cut(s) 295, 982, 1108, 1415, 1494, 2804, 3155, 3689
NlaIV GGNNCC 6 cut(s) 297, 728, 1557, 1870, 2806, 3157
NmeAIII GCCGAG 1 cut(s) 1028
NmuCI GTSAC 2 cut(s) 1696, 3645
NsiI ATGCAT 8 cut(s) 1244, 1317, 2171, 2629, 2743, 2858, 2977, 3223
NspI RCATGY 8 cut(s) 1246, 1319, 1628, 2741, 2745, 2975, 3096, 3221
OliI CACNNNNGTG 1 cut(s) 1339
PaeI GCATGC 3 cut(s) 2745, 2975, 3096
PaeR7I CTCGAG 2 cut(s) 1407, 3426
PauI GCGCGC 1 cut(s) 1573
PctI GAATGC 4 cut(s) 488, 2217, 2302, 2476
PdmI GAANNNNTTC 1 cut(s) 1929
PfeI GAWTC 9 cut(s) 1290, 1826, 2531, 2642, 2820, 2876, 2990, 3171, 3541
PinAI ACCGGT 1 cut(s) 257
PleI GAGTC 3 cut(s) 467, 3286, 3437
PpsI GAGTC 3 cut(s) 467, 3286, 3437
Ppu21I YACGTR 1 cut(s) 2513
PshBI ATTAAT 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 1819
PspFI CCCAGC 2 cut(s) 1027, 1551
PspGI CCWGG 1 cut(s) 1819
PspN4I GGNNCC 6 cut(s) 297, 728, 1557, 1870, 2806, 3157
PspPI GGNCC 3 cut(s) 1069, 2454, 2797
PstI CTGCAG 1 cut(s) 2134
PstNI CAGNNNCTG 1 cut(s) 963
PsuI RGATCY 5 cut(s) 295, 1108, 2804, 3155, 3689
PteI GCGCGC 1 cut(s) 1573
RsaI GTAC 2 cut(s) 427, 1436
RsaNI GTAC 2 cut(s) 426, 1435
RseI CAYNNNNRTG 2 cut(s) 1339, 2861
SaqAI TTAA 9 cut(s) 813, 1053, 1125, 1391, 1473, 1547, 1736, 2123, 2172
Sau3AI GATC 8 cut(s) 295, 982, 1108, 1415, 1494, 2804, 3155, 3689
Sau96I GGNCC 3 cut(s) 1069, 2454, 2797
SbfI CCTGCAGG 1 cut(s) 2134
SchI GAGTC 3 cut(s) 468, 3287, 3438
ScrFI CCNGG 2 cut(s) 1821, 3697
SdaI CCTGCAGG 1 cut(s) 2134
SduI GDGCHC 2 cut(s) 277, 768
SfaNI GCATC 4 cut(s) 1229, 1547, 2104, 2614
SfcI CTRYAG 4 cut(s) 300, 1104, 2130, 2367
Sfr274I CTCGAG 2 cut(s) 1407, 3426
SinI GGWCC 1 cut(s) 2454
SlaI CTCGAG 2 cut(s) 1407, 3426
SmiMI CAYNNNNRTG 2 cut(s) 1339, 2861
SmlI CTYRAG 3 cut(s) 902, 1407, 3426
SmoI CTYRAG 3 cut(s) 902, 1407, 3426
SphI GCATGC 3 cut(s) 2745, 2975, 3096
Sse8387I CCTGCAGG 1 cut(s) 2134
SsiI CCGC 9 cut(s) 39, 131, 174, 234, 423, 595, 1215, 2239, 3665
StyD4I CCNGG 2 cut(s) 1819, 3695
TaaI ACNGT 9 cut(s) 304, 694, 1105, 1439, 1560, 1792, 2088, 3196, 3312
TaiI ACGT 3 cut(s) 1263, 2515, 3390
TaqI TCGA 6 cut(s) 462, 1012, 1408, 2405, 3427, 3477
TaqII GACCGA 2 cut(s) 1552, 2243
TatI WGTACW 1 cut(s) 1434
TfiI GAWTC 9 cut(s) 1290, 1826, 2531, 2642, 2820, 2876, 2990, 3171, 3541
Tru1I TTAA 9 cut(s) 813, 1053, 1125, 1391, 1473, 1547, 1736, 2123, 2172
Tru9I TTAA 9 cut(s) 813, 1053, 1125, 1391, 1473, 1547, 1736, 2123, 2172
TseFI GTSAC 2 cut(s) 1696, 3645
Tsp45I GTSAC 2 cut(s) 1696, 3645
TspDTI ATGAA 8 cut(s) 389, 768, 1127, 1335, 1479, 1742, 2000, 2376
TspGWI ACGGA 3 cut(s) 2443, 2817, 3551
VpaK11BI GGWCC 1 cut(s) 2454
VspI ATTAAT 1 cut(s) 813
XbaI TCTAGA 2 cut(s) 1228, 3434
XceI RCATGY 8 cut(s) 1246, 1319, 1628, 2741, 2745, 2975, 3096, 3221
XhoI CTCGAG 2 cut(s) 1407, 3426
XmnI GAANNNNTTC 1 cut(s) 1929
Zsp2I ATGCAT 8 cut(s) 1244, 1317, 2171, 2629, 2743, 2858, 2977, 3223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.