Rh2BG420000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000280
Physical Location & Seq
Reverse (-)
59139591 .. 59146768
7178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG420000.1

Sequence Viewer

Length: 276 bp
ATGTCACCGCCTCTGAGAAAGTCTCAAGTGTCAACTGATGTTTGGCTCTCCTCGGCAGCTCATAAGAGGATAGTCTATTCAACACACAACTACTACTACTGGGGCGGATCCAACCCACCCGAAGTCCCCGACGAAGACTCTCACACTCCCTCTCAGTCCCTCACGTGCTATACTGCTCTAAGCCTTAGATTACTCTTCTTCTTCTTCTTCAATTTGGGGCAATCAATTGGATTGAGGATTGTTTCTGTGTGCCATCGATGTGAGATTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.41

Weight (kDa)

6.39

Isoelectric Point (pI)

75.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 105
AclWI GGATC 2 cut(s) 102, 115
AcvI CACGTG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 81, 211
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 2 cut(s) 102, 115
ApeKI GCWGC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 107
BbrPI CACGTG 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpuEI CTTGAG 1 cut(s) 9
Bsa29I ATCGAT 1 cut(s) 256
BsaAI YACGTR 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 104
BseCI ATCGAT 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 5, 167
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 256
BslFI GGGAC 2 cut(s) 110, 142
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 110, 142
Bsp143I GATC 1 cut(s) 107
BspACI CCGC 2 cut(s) 8, 105
BspCNI CTCAG 2 cut(s) 6, 166
BspDI ATCGAT 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 2 cut(s) 102, 115
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 14, 153, 179, 185
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
Bsu15I ATCGAT 1 cut(s) 256
BsuTUI ATCGAT 1 cut(s) 256
ClaI ATCGAT 1 cut(s) 256
CviJI RGCY 3 cut(s) 46, 59, 183
CviKI_1 RGCY 3 cut(s) 46, 59, 183
DdeI CTNAG 4 cut(s) 14, 153, 179, 185
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 120
Eco72I CACGTG 1 cut(s) 165
FaiI YATR 2 cut(s) 63, 171
FaqI GGGAC 2 cut(s) 110, 142
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 164
HpyF3I CTNAG 4 cut(s) 14, 153, 179, 185
HpySE526I ACGT 1 cut(s) 164
Kzo9I GATC 1 cut(s) 107
LpnPI CCDG 1 cut(s) 85
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 6 cut(s) 146, 187, 190, 193, 196, 199
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 107
MluCI AATT 2 cut(s) 211, 225
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 7 cut(s) 21, 60, 61, 160, 170, 228, 262
MslI CAYNNNNRTG 1 cut(s) 258
MunI CAATTG 1 cut(s) 225
NdeII GATC 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 3
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 131
PmaCI CACGTG 1 cut(s) 165
PmlI CACGTG 1 cut(s) 165
PpsI GAGTC 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 165
PspCI CACGTG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 258
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 107
SchI GAGTC 1 cut(s) 131
SetI ASST 2 cut(s) 61, 167
SgeI CNNG 7 cut(s) 38, 64, 112, 131, 140, 175, 177
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 2 cut(s) 211, 225
SsiI CCGC 2 cut(s) 8, 105
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 256
TasI AATT 2 cut(s) 211, 225
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 3
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.