Rmu_sc0007736.1_g000006

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007736.1
OG0000280
Physical Location & Seq
Reverse (-)
23551 .. 33150
9600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007736.1_g000006.1.cds

Sequence Viewer

Length: 2964 bp
atggcagggtttgggggtgagggcattttgggaaatcaaaattataggaccaaacgggtgggaggtgaagggagttgggattctccgagcttgaggaagaggaagagagaaggtgaagctggagggtcatgttctaagaagaaatgtactaagggctcaaattggtttaattggaagtcctcaatgtgccatcagtgtcagaggaatgatagggccagagttgttaactgcacaagttgtaagcggaagcgattttgtgtatcatgcattcagaattggtatccccagatgtcagaggaggcaattgctgatgcttgtcctgtatgccttggaaattgcaattgcaaagcatgcttgcgtttagatgaaactaatcataatttgaatagcaagcttgcattgcacgttagtaaagatgaagaagtggagcactctaagtatttgcttgaagcattgcttccattcttgaaaagacttaatgatgaacaagttatagagatggtgatggaggctagaagacaagggaaatctctttcggagctaaagatccaaaggtcggacagctctcctgatgatcgtgtatactgcgacaactgcaatacatctattattgatttccacagaagctgtcctatatgttcatatgacctttgtcttatctgctgccgggagattcgagatggaaaccagcaaggaagtgcagaagaagtgattggggagtatatcaatcaaggtctagactatttacatggtggaaagggcaacttaataaaaaagccttctgaaactaaactcaagtgtcctgtaaggtcaacatctaagtggaaagtaagcaaagatcgaagtattttttgcccctcaaaagacatggacggctgtggttgtagtgttctagaactgagatgcatattttctgaaaaccacatcatagagttggtagaaaaagcagaagaaattgcagaaactaaaaaactgatgtatgcagctggaccttctgcacagaagttttcatggttcaactctgcaggtggtgctgactcaagaggcaatgaattgacgaaagcagcatctcgagaggattcggaggacaactacttgtacagtccaagggctataaatatccaacatgaagactttaagcattttcgctgtcattggatccagggtgagcctgtgattgtggggaatgtgcttgaaactgcaacaggtttgagctgggaaccatttgtcatgtggcgtgcttgtcgtcagatgagaaataccgggcatgatagacatttggaatttaaggccattgattgcttggattggtgtgagctagatatcggtatccgccaattttttactggatatttggagggccagtttgatgggaaaatgtggcctcgtattctgaaactcaacgatcagtcccttgatgattatttggagaagcgccttcctcgtcattgtgctgagtttatttgttgcttgccatttaaggaatatacccatcctcgcagtggcctcctgaaccttgctgtaaaattgcctatggagtgtgtaaagccagacatggggccaaaaatggatattgcttatggtgtgtcccaggagcttggacgtggagattcagtaactaagcttcactgtgattcatgtgatgtggtcactcaccccatacatgatcagactttttatctgacattagagcacaagaggaagctgaaggaagaatatggaattgaaccatggacatttatccagaaacttggagatgctgtctttattcctgcaggatgtccacaccaagttagaaacttgaagtcgtgcattaaagtttctgttgaatttgtctcccctgaaaatgttggtgagtgcttacgtctgacagatgagttccgtacacttccacgaaagcatatagctaaagaggataaattggaggtgaagaaaatgattgttcatgctgtacatgaggctgtggagattttggatcagagtttgaggttatgtagcgttaaaaacttcagggcagagaagccttcacagccccctgttaatatatataagggcaacattgcaaacaaattgagagagaaagcagctagaggacgaccacaagaagaatcgaaagaggttcaaattcttgaggagcagccttcacaattatcacagcctatagagcctgctattgatgttggtagatttggacgcacacggagagaggaaaaagatggagggcaaccacaagaagcaagtagagtagatgaagaggtccaaattcttaagggacagccttcacagtcagcacaacatgtacagcccactgcttatgttgatagcaagcatacgatgagaaaggaaacagagggaggggtactgcaagaaacacatggagaagttgaagacgtccaaattcttgagaagcagccttggcgatcatcacaaactgtacaagccactcttcatgttggtagcattgaacatgcatctagagaggaaaaagctggatggcaaccacaagaaacaagtggagaagatgaagaagtccaaattcttgaggagcagcattggcaatcatcaaaatctgtacaagcaactgttcacattggtagcattggacatgcaatgagagaggaaaaagtgggaggacgacagcatgaaggaaggggagaacaggaagaggtccgaaatcttggtgaaaagccttcaaagttatcacaacctgaacctgtccagcccactgttgatgttgataaagcggtgcagcaactggatgagctcgtggagctccttagacattttgaacagaggaggataccgatgggagggagagatggaagaatcggttctcaattccagcttttatgctcggagttcttgactttatctttgcatcttggttatgcacctaatgataccaaacctcacactacaccatctgctcagccgctacatgatcctccggttgtagatctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

987

Amino Acids

111.88

Weight (kDa)

6.28

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1016
AatII GACGTC 1 cut(s) 2394
Acc36I ACCTGC 1 cut(s) 1016
AccI GTMKAC 1 cut(s) 582
AciI CCGC 4 cut(s) 244, 1333, 2744, 2933
AclWI GGATC 5 cut(s) 541, 1153, 1166, 1983, 2936
AcsI RAATTY 6 cut(s) 1283, 1829, 2124, 2262, 2397, 2535
AcuI CTGAAG 2 cut(s) 1727, 1993
AcyI GRCGYC 1 cut(s) 2391
AfaI GTAC 8 cut(s) 148, 1100, 1885, 1953, 2301, 2361, 2436, 2574
AfiI CCNNNNNNNGG 4 cut(s) 556, 1502, 1556, 2810
AflII CTTAAG 1 cut(s) 2267
AflIII ACRYGT 1 cut(s) 2296
AjiI CACGTC 1 cut(s) 1604
AjnI CCWGG 2 cut(s) 1161, 1590
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
Alw21I GWGCWC 4 cut(s) 432, 1695, 2766, 2775
Alw26I GTCTC 1 cut(s) 1840
AlwI GGATC 5 cut(s) 541, 1153, 1166, 1983, 2936
AlwNI CAGNNNCTG 2 cut(s) 627, 2755
Ama87I CYCGRG 1 cut(s) 1071
AoxI GGCC 6 cut(s) 213, 1290, 1360, 1382, 1504, 1559
ApeKI GCWGC 8 cut(s) 663, 983, 1064, 2084, 2137, 2410, 2548, 2749
ApoI RAATTY 6 cut(s) 1283, 1829, 2124, 2262, 2397, 2535
ArsI GACNNNNNNTTYG 2 cut(s) 2857, 2889
Asp700I GAANNNNTTC 1 cut(s) 2830
AspLEI GCGC 1 cut(s) 1437
AspS9I GGNCC 7 cut(s) 48, 213, 989, 1360, 1559, 2257, 2668
AsuC2I CCSGG 2 cut(s) 668, 1264
AsuHPI GGTGA 9 cut(s) 29, 77, 125, 514, 1178, 1646, 1865, 1939, 2693
AvaI CYCGRG 1 cut(s) 1071
AvaII GGWCC 4 cut(s) 48, 989, 2257, 2668
BamHI GGATCC 1 cut(s) 1158
BanII GRGCYC 3 cut(s) 158, 2766, 2775
BarI GAAGNNNNNNTAC 2 cut(s) 1608, 1640
BauI CACGAG 1 cut(s) 2765
BbsI GAAGAC 3 cut(s) 523, 1137, 2394
Bbv12I GWGCWC 4 cut(s) 432, 1695, 2766, 2775
BbvI GCAGC 8 cut(s) 650, 995, 1076, 2096, 2149, 2422, 2560, 2761
BceAI ACGGC 1 cut(s) 889
BciT130I CCWGG 2 cut(s) 1163, 1592
BciVI GTATCC 3 cut(s) 291, 1340, 2793
BclI TGATCA 1 cut(s) 1666
BcnI CCSGG 2 cut(s) 668, 1264
BcoDI GTCTC 1 cut(s) 1840
BfaI CTAG 6 cut(s) 513, 737, 893, 1319, 2088, 2475
BfmI CTRYAG 3 cut(s) 1023, 1773, 2160
BfoI RGCGCY 1 cut(s) 1438
BfrI CTTAAG 1 cut(s) 2267
BfuAI ACCTGC 1 cut(s) 1016
BfuI GTATCC 3 cut(s) 291, 1340, 2793
BglII AGATCT 1 cut(s) 2956
BisI GCNGC 9 cut(s) 664, 984, 1065, 2085, 2138, 2411, 2549, 2750, 2933
BlpI GCTNAGC 1 cut(s) 2928
BlsI GCNGC 9 cut(s) 665, 985, 1066, 2086, 2139, 2412, 2550, 2751, 2934
Bme1390I CCNGG 4 cut(s) 668, 1163, 1264, 1592
Bme18I GGWCC 4 cut(s) 48, 989, 2257, 2668
BmeT110I CYCGRG 1 cut(s) 1071
BmgBI CACGTC 1 cut(s) 1604
BmgT120I GGNCC 7 cut(s) 48, 213, 989, 1360, 1559, 2257, 2668
BmiI GGNNCC 3 cut(s) 1160, 1221, 1560
BmrFI CCNGG 4 cut(s) 668, 1163, 1264, 1592
BmsI GCATC 6 cut(s) 301, 893, 1076, 1747, 2480, 2887
BoxI GACNNNNGTC 1 cut(s) 651
BpiI GAAGAC 3 cut(s) 523, 1137, 2394
BpmI CTGGAG 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 2928
BpuEI CTTGAG 6 cut(s) 112, 779, 1024, 2150, 2423, 2561
BpuMI CCSGG 2 cut(s) 668, 1264
BsaHI GRCGYC 1 cut(s) 2391
BsaJI CCNNGG 6 cut(s) 328, 1106, 1162, 1590, 1730, 2414
BsaWI WCCGGW 1 cut(s) 2947
BsaXI ACNNNNNCTCC 6 cut(s) 1349, 1379, 1599, 1629, 1746, 1776
Bsc4I CCNNNNNNNGG 4 cut(s) 556, 1502, 1556, 2810
Bse1I ACTGG 3 cut(s) 1351, 1363, 2760
Bse3DI GCAATG 5 cut(s) 398, 452, 1054, 2058, 2616
BseBI CCWGG 2 cut(s) 1163, 1592
BseDI CCNNGG 6 cut(s) 328, 1106, 1162, 1590, 1730, 2414
BseGI GGATG 4 cut(s) 1492, 1784, 2498, 2764
BseLI CCNNNNNNNGG 4 cut(s) 556, 1502, 1556, 2810
BseMI GCAATG 5 cut(s) 398, 452, 1054, 2058, 2616
BseMII CTCAG 3 cut(s) 890, 1446, 2942
BseNI ACTGG 3 cut(s) 1351, 1363, 2760
BseRI GAGGAG 4 cut(s) 311, 2147, 2558, 2809
BseXI GCAGC 8 cut(s) 650, 995, 1076, 2096, 2149, 2422, 2560, 2761
BseYI CCCAGC 1 cut(s) 1215
BsgI GTGCAG 4 cut(s) 214, 720, 981, 2768
BshFI GGCC 6 cut(s) 215, 1292, 1362, 1384, 1506, 1561
BsiHKAI GWGCWC 4 cut(s) 432, 1695, 2766, 2775
BsiHKCI CYCGRG 1 cut(s) 1071
BsiSI CCGG 3 cut(s) 667, 1263, 2948
BslFI GGGAC 3 cut(s) 1396, 1573, 2286
BslI CCNNNNNNNGG 4 cut(s) 556, 1502, 1556, 2810
BsmAI GTCTC 1 cut(s) 1840
BsmFI GGGAC 3 cut(s) 1396, 1573, 2286
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 6 cut(s) 215, 1292, 1362, 1384, 1506, 1561
BsoBI CYCGRG 1 cut(s) 1071
Bsp1286I GDGCHC 5 cut(s) 158, 432, 1695, 2766, 2775
Bsp1407I TGTACA 5 cut(s) 1098, 1951, 2299, 2434, 2572
Bsp1720I GCTNAGC 1 cut(s) 2928
Bsp19I CCATGG 1 cut(s) 1730
BspACI CCGC 4 cut(s) 244, 1333, 2744, 2933
BspANI GGCC 6 cut(s) 215, 1292, 1362, 1384, 1506, 1561
BspCNI CTCAG 3 cut(s) 891, 1447, 2941
BspLI GGNNCC 3 cut(s) 1160, 1221, 1560
BspMAI CTGCAG 2 cut(s) 1027, 1777
BspMI ACCTGC 1 cut(s) 1016
BspPI GGATC 5 cut(s) 541, 1153, 1166, 1983, 2936
BspTI CTTAAG 1 cut(s) 2267
BsrDI GCAATG 5 cut(s) 398, 452, 1054, 2058, 2616
BsrGI TGTACA 5 cut(s) 1098, 1951, 2299, 2434, 2572
BsrI ACTGG 3 cut(s) 1351, 1363, 2760
BssECI CCNNGG 6 cut(s) 328, 1106, 1162, 1590, 1730, 2414
BssNAI GTATAC 1 cut(s) 583
BssNI GRCGYC 1 cut(s) 2391
BssSI CACGAG 1 cut(s) 2765
BssT1I CCWWGG 4 cut(s) 328, 1106, 1730, 2414
Bst1107I GTATAC 1 cut(s) 583
Bst2BI CACGAG 1 cut(s) 2765
Bst2UI CCWGG 2 cut(s) 1163, 1592
Bst4CI ACNGT 6 cut(s) 1103, 1631, 2286, 2434, 2584, 2728
Bst6I CTCTTC 5 cut(s) 92, 98, 2247, 2451, 2658
BstACI GRCGYC 1 cut(s) 2391
BstAFI CTTAAG 1 cut(s) 2267
BstAPI GCANNNNNTGC 2 cut(s) 351, 1031
BstAUI TGTACA 5 cut(s) 1098, 1951, 2299, 2434, 2572
BstC8I GCNNGC 8 cut(s) 352, 356, 392, 396, 1239, 1472, 2169, 2327
BstDEI CTNAG 9 cut(s) 135, 150, 435, 819, 899, 1455, 1620, 2777, 2928
BstDSI CCRYGG 1 cut(s) 1730
BstF5I GGATG 4 cut(s) 1492, 1784, 2498, 2764
BstH2I RGCGCY 1 cut(s) 1438
BstHHI GCGC 1 cut(s) 1437
BstMAI GTCTC 1 cut(s) 1840
BstMWI GCNNNNNNNGC 9 cut(s) 351, 400, 594, 1031, 2029, 2164, 2416, 2554, 2770
BstNI CCWGG 2 cut(s) 1163, 1592
BstNSI RCATGY 4 cut(s) 354, 2300, 2471, 2609
BstPAI GACNNNNGTC 1 cut(s) 651
BstSCI CCNGG 4 cut(s) 666, 1161, 1262, 1590
BstSFI CTRYAG 3 cut(s) 1023, 1773, 2160
BstV1I GCAGC 8 cut(s) 650, 995, 1076, 2096, 2149, 2422, 2560, 2761
BstV2I GAAGAC 3 cut(s) 523, 1137, 2394
BstX2I RGATCY 3 cut(s) 546, 1158, 2956
BstXI CCANNNNNNTGG 4 cut(s) 58, 1370, 1598, 1751
BstYI RGATCY 3 cut(s) 546, 1158, 2956
BstZ17I GTATAC 1 cut(s) 583
BsuI GTATCC 3 cut(s) 291, 1340, 2793
BsuRI GGCC 6 cut(s) 215, 1292, 1362, 1384, 1506, 1561
BtgI CCRYGG 1 cut(s) 1730
BtrI CACGTC 1 cut(s) 1604
BtsCI GGATG 4 cut(s) 1492, 1784, 2498, 2764
BtsI GCAGTG 2 cut(s) 1507, 2307
BtsIMutI CAGTG 5 cut(s) 200, 1507, 1627, 2307, 2724
BveI ACCTGC 1 cut(s) 1016
Cac8I GCNNGC 8 cut(s) 352, 356, 392, 396, 1239, 1472, 2169, 2327
CaiI CAGNNNCTG 2 cut(s) 627, 2755
CfoI GCGC 1 cut(s) 1437
Cfr13I GGNCC 7 cut(s) 48, 213, 989, 1360, 1559, 2257, 2668
CseI GACGC 1 cut(s) 2202
Csp6I GTAC 8 cut(s) 147, 1099, 1884, 1952, 2300, 2360, 2435, 2573
CviQI GTAC 8 cut(s) 147, 1099, 1884, 1952, 2300, 2360, 2435, 2573
DdeI CTNAG 9 cut(s) 135, 150, 435, 819, 899, 1455, 1620, 2777, 2928
Eam1104I CTCTTC 5 cut(s) 92, 98, 2247, 2451, 2658
EarI CTCTTC 5 cut(s) 92, 98, 2247, 2451, 2658
EciI GGCGGA 1 cut(s) 1322
Ecl136II GAGCTC 2 cut(s) 2764, 2773
Eco130I CCWWGG 4 cut(s) 328, 1106, 1730, 2414
Eco24I GRGCYC 3 cut(s) 158, 2766, 2775
Eco32I GATATC 1 cut(s) 1324
Eco47I GGWCC 4 cut(s) 48, 989, 2257, 2668
Eco53kI GAGCTC 2 cut(s) 2764, 2773
Eco57I CTGAAG 2 cut(s) 1727, 1993
Eco88I CYCGRG 1 cut(s) 1071
EcoICRI GAGCTC 2 cut(s) 2764, 2773
EcoRII CCWGG 2 cut(s) 1161, 1590
EcoRV GATATC 1 cut(s) 1324
EcoT14I CCWWGG 4 cut(s) 328, 1106, 1730, 2414
EcoT22I ATGCAT 3 cut(s) 269, 908, 2473
EcoT38I GRGCYC 3 cut(s) 158, 2766, 2775
ErhI CCWWGG 4 cut(s) 328, 1106, 1730, 2414
FalI AAGNNNNNCTT 6 cut(s) 441, 473, 749, 781, 2430, 2462
FaqI GGGAC 3 cut(s) 1396, 1573, 2286
FauNDI CATATG 1 cut(s) 643
FbaI TGATCA 1 cut(s) 1666
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 9 cut(s) 664, 984, 1065, 2085, 2138, 2411, 2549, 2750, 2933
FokI GGATG 4 cut(s) 1479, 1791, 2505, 2771
FriOI GRGCYC 3 cut(s) 158, 2766, 2775
Fsp4HI GCNGC 9 cut(s) 664, 984, 1065, 2085, 2138, 2411, 2549, 2750, 2933
FspBI CTAG 6 cut(s) 513, 737, 893, 1319, 2088, 2475
GlaI GCGC 1 cut(s) 1436
GluI GCNGC 9 cut(s) 664, 984, 1065, 2085, 2138, 2411, 2549, 2750, 2933
GsaI CCCAGC 1 cut(s) 1219
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 1438
HaeIII GGCC 6 cut(s) 215, 1292, 1362, 1384, 1506, 1561
HapII CCGG 3 cut(s) 667, 1263, 2948
HgaI GACGC 1 cut(s) 2202
HhaI GCGC 1 cut(s) 1437
Hin1I GRCGYC 1 cut(s) 2391
Hin6I GCGC 1 cut(s) 1435
HinP1I GCGC 1 cut(s) 1435
HincII GTYRAC 2 cut(s) 226, 813
HindII GTYRAC 2 cut(s) 226, 813
HindIII AAGCTT 2 cut(s) 392, 1622
HinfI GANTC 8 cut(s) 80, 673, 1037, 1079, 1610, 1634, 2108, 2826
HpaI GTTAAC 1 cut(s) 226
HpaII CCGG 3 cut(s) 667, 1263, 2948
HphI GGTGA 9 cut(s) 29, 77, 125, 514, 1178, 1646, 1865, 1939, 2693
Hpy166II GTNNAC 6 cut(s) 226, 583, 813, 1784, 1886, 2587
Hpy8I GTNNAC 6 cut(s) 226, 583, 813, 1784, 1886, 2587
HpyCH4III ACNGT 6 cut(s) 1103, 1631, 2286, 2434, 2584, 2728
HpyCH4IV ACGT 4 cut(s) 405, 1603, 1864, 2391
HpyF10VI GCNNNNNNNGC 9 cut(s) 351, 400, 594, 1031, 2029, 2164, 2416, 2554, 2770
HpyF3I CTNAG 9 cut(s) 135, 150, 435, 819, 899, 1455, 1620, 2777, 2928
HpySE526I ACGT 4 cut(s) 405, 1603, 1864, 2391
Hsp92I GRCGYC 1 cut(s) 2391
HspAI GCGC 1 cut(s) 1435
Ksp22I TGATCA 1 cut(s) 1666
KspAI GTTAAC 1 cut(s) 226
LmnI GCTCC 7 cut(s) 427, 538, 1594, 2134, 2545, 2770, 2778
Lsp1109I GCAGC 8 cut(s) 650, 995, 1076, 2096, 2149, 2422, 2560, 2761
LweI GCATC 6 cut(s) 301, 893, 1076, 1747, 2480, 2887
MaeI CTAG 6 cut(s) 513, 737, 893, 1319, 2088, 2475
MaeII ACGT 4 cut(s) 405, 1603, 1864, 2391
MaeIII GTNAC 2 cut(s) 1615, 1648
MfeI CAATTG 2 cut(s) 303, 340
MflI RGATCY 3 cut(s) 546, 1158, 2956
MhlI GDGCHC 5 cut(s) 158, 432, 1695, 2766, 2775
MlyI GAGTC 1 cut(s) 1031
MmeI TCCRAC 2 cut(s) 537, 1147
Mph1103I ATGCAT 3 cut(s) 269, 908, 2473
MroXI GAANNNNTTC 1 cut(s) 2830
MslI CAYNNNNRTG 1 cut(s) 820
MspA1I CMGCKG 1 cut(s) 986
MspCI CTTAAG 1 cut(s) 2267
MspI CCGG 3 cut(s) 667, 1263, 2948
MspR9I CCNGG 4 cut(s) 668, 1163, 1264, 1592
MunI CAATTG 2 cut(s) 303, 340
Mva1269I GAATGC 1 cut(s) 267
MvaI CCWGG 2 cut(s) 1163, 1592
MwoI GCNNNNNNNGC 9 cut(s) 351, 400, 594, 1031, 2029, 2164, 2416, 2554, 2770
NciI CCSGG 2 cut(s) 668, 1264
NcoI CCATGG 1 cut(s) 1730
NdeI CATATG 1 cut(s) 643
NlaIV GGNNCC 3 cut(s) 1160, 1221, 1560
NmuCI GTSAC 1 cut(s) 1648
NsiI ATGCAT 3 cut(s) 269, 908, 2473
NspI RCATGY 4 cut(s) 354, 2300, 2471, 2609
PaeI GCATGC 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 1071
PaqCI CACCTGC 1 cut(s) 1016
PciI ACATGT 1 cut(s) 2296
PctI GAATGC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 2830
PfeI GAWTC 7 cut(s) 80, 673, 1079, 1610, 1634, 2108, 2826
PkrI GCNGC 9 cut(s) 665, 985, 1066, 2086, 2139, 2412, 2550, 2751, 2934
PleI GAGTC 1 cut(s) 1031
PpsI GAGTC 1 cut(s) 1031
PscI ACATGT 1 cut(s) 2296
PshAI GACNNNNGTC 1 cut(s) 651
Psp124BI GAGCTC 2 cut(s) 2766, 2775
Psp6I CCWGG 2 cut(s) 1161, 1590
PspFI CCCAGC 1 cut(s) 1215
PspGI CCWGG 2 cut(s) 1161, 1590
PspN4I GGNNCC 3 cut(s) 1160, 1221, 1560
PspPI GGNCC 7 cut(s) 48, 213, 989, 1360, 1559, 2257, 2668
PstI CTGCAG 2 cut(s) 1027, 1777
PstNI CAGNNNCTG 2 cut(s) 627, 2755
PsuI RGATCY 3 cut(s) 546, 1158, 2956
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 8 cut(s) 148, 1100, 1885, 1953, 2301, 2361, 2436, 2574
RsaNI GTAC 8 cut(s) 147, 1099, 1884, 1952, 2300, 2360, 2435, 2573
RseI CAYNNNNRTG 1 cut(s) 820
SacI GAGCTC 2 cut(s) 2766, 2775
SatI GCNGC 9 cut(s) 664, 984, 1065, 2085, 2138, 2411, 2549, 2750, 2933
Sau96I GGNCC 7 cut(s) 48, 213, 989, 1360, 1559, 2257, 2668
SbfI CCTGCAGG 1 cut(s) 1777
SchI GAGTC 1 cut(s) 1031
ScrFI CCNGG 4 cut(s) 668, 1163, 1264, 1592
SdaI CCTGCAGG 1 cut(s) 1777
SduI GDGCHC 5 cut(s) 158, 432, 1695, 2766, 2775
SfaNI GCATC 6 cut(s) 301, 893, 1076, 1747, 2480, 2887
SfcI CTRYAG 3 cut(s) 1023, 1773, 2160
Sfr274I CTCGAG 1 cut(s) 1071
SinI GGWCC 4 cut(s) 48, 989, 2257, 2668
SlaI CTCGAG 1 cut(s) 1071
SmiMI CAYNNNNRTG 1 cut(s) 820
SmlI CTYRAG 8 cut(s) 91, 794, 1039, 1071, 2129, 2267, 2402, 2540
SmoI CTYRAG 8 cut(s) 91, 794, 1039, 1071, 2129, 2267, 2402, 2540
SphI GCATGC 1 cut(s) 354
Sse8387I CCTGCAGG 1 cut(s) 1777
SsiI CCGC 4 cut(s) 244, 1333, 2744, 2933
SspMI CTAG 6 cut(s) 513, 737, 893, 1319, 2088, 2475
SstI GAGCTC 2 cut(s) 2766, 2775
StyD4I CCNGG 4 cut(s) 666, 1161, 1262, 1590
StyI CCWWGG 4 cut(s) 328, 1106, 1730, 2414
TaaI ACNGT 6 cut(s) 1103, 1631, 2286, 2434, 2584, 2728
TaiI ACGT 4 cut(s) 408, 1606, 1867, 2394
TaqI TCGA 4 cut(s) 676, 841, 1072, 2111
TatI WGTACW 6 cut(s) 146, 1098, 1951, 2299, 2434, 2572
TauI GCSGC 1 cut(s) 2935
TfiI GAWTC 7 cut(s) 80, 673, 1079, 1610, 1634, 2108, 2826
TscAI CASTG 5 cut(s) 200, 1507, 1634, 2314, 2731
TseFI GTSAC 1 cut(s) 1648
TseI GCWGC 8 cut(s) 663, 983, 1064, 2084, 2137, 2410, 2548, 2749
Tsp45I GTSAC 1 cut(s) 1648
TspGWI ACGGA 2 cut(s) 1871, 2215
TspRI CASTG 5 cut(s) 200, 1507, 1634, 2314, 2731
Vha464I CTTAAG 1 cut(s) 2267
VpaK11BI GGWCC 4 cut(s) 48, 989, 2257, 2668
XapI RAATTY 6 cut(s) 1283, 1829, 2124, 2262, 2397, 2535
XbaI TCTAGA 3 cut(s) 736, 892, 2474
XceI RCATGY 4 cut(s) 354, 2300, 2471, 2609
XcmI CCANNNNNNNNNTGG 4 cut(s) 1230, 1300, 1343, 1499
XhoI CTCGAG 1 cut(s) 1071
XmiI GTMKAC 1 cut(s) 582
XmnI GAANNNNTTC 1 cut(s) 2830
XspI CTAG 6 cut(s) 513, 737, 893, 1319, 2088, 2475
ZraI GACGTC 1 cut(s) 2392
Zsp2I ATGCAT 3 cut(s) 269, 908, 2473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.