Rh1BG165400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000280
Physical Location & Seq
Reverse (-)
26523515 .. 26523850
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG165400.1

Sequence Viewer

Length: 336 bp
ATGAAGAGAGACGGCGTAAAGCAAGCTTATGATGACCCAGAACCTACATGTCCAGAGAAAGACGAGGACTTTTTAGAAAACCAGAGTCACATGGCTGAGATTGTGCAGAAGAAGCGTAGTACTAGGAAGAGAGGTACAGGGAAGGGATTGGCAGCCGGGAATGGCCCAAGGGATTGTGAGAAAGGAGTTCTATCATGTGCTGCCAACTGGGGTCGGAAGCGGTTTAGGCGCGTCAGACCACGCAACGCTGCAAAGGTACCTCAAGTTTGTATCTTTTTTTTTTTTAATTTTTTTTTTTTAAAGTATTGCAGTGTGTGTGTGATTTGTGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.7

Weight (kDa)

9.56

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 256
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 220
AfaI GTAC 3 cut(s) 121, 136, 258
AflIII ACRYGT 1 cut(s) 47
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 3
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 3 cut(s) 152, 200, 248
Asp718I GGTACC 1 cut(s) 256
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 157
BanI GGYRCC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 164, 187, 235
BceAI ACGGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 1 cut(s) 123
BisI GCNGC 3 cut(s) 153, 201, 249
BlsI GCNGC 3 cut(s) 154, 202, 250
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 3 cut(s) 164, 187, 235
BsgI GTGCAG 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsnI GGCC 1 cut(s) 165
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 112, 226
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 164, 187, 235
BsuRI GGCC 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 220
Csp6I GTAC 3 cut(s) 120, 135, 257
CviAII CATG 3 cut(s) 48, 91, 195
CviJI RGCY 4 cut(s) 26, 95, 155, 165
CviKI_1 RGCY 4 cut(s) 26, 95, 155, 165
CviQI GTAC 3 cut(s) 120, 135, 257
DdeI CTNAG 1 cut(s) 96
DraI TTTAAA 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 3 cut(s) 51, 94, 198
FaiI YATR 4 cut(s) 30, 49, 92, 196
FatI CATG 3 cut(s) 47, 90, 194
Fnu4HI GCNGC 3 cut(s) 153, 201, 249
Fsp4HI GCNGC 3 cut(s) 153, 201, 249
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 230
GluI GCNGC 3 cut(s) 153, 201, 249
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 231
Hin1II CATG 3 cut(s) 51, 94, 198
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 216, 236
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 106, 251, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 226
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 3 cut(s) 51, 94, 198
HspAI GCGC 1 cut(s) 229
KpnI GGTACC 1 cut(s) 260
LpnPI CCDG 6 cut(s) 51, 66, 95, 123, 169, 193
Lsp1109I GCAGC 3 cut(s) 164, 187, 235
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 86
MboII GAAGA 3 cut(s) 16, 121, 139
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 3 cut(s) 58, 125, 270
MseI TTAA 2 cut(s) 285, 299
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 112, 226
NciI CCSGG 1 cut(s) 157
NlaIII CATG 3 cut(s) 51, 94, 198
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 1 cut(s) 51
PciI ACATGT 1 cut(s) 47
PkrI GCNGC 3 cut(s) 154, 202, 250
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PscI ACATGT 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 164
RsaI GTAC 3 cut(s) 121, 136, 258
RsaNI GTAC 3 cut(s) 120, 135, 257
SaqAI TTAA 2 cut(s) 285, 299
SatI GCNGC 3 cut(s) 153, 201, 249
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 157
SetI ASST 5 cut(s) 28, 46, 136, 258, 262
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 167
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 119
Tru1I TTAA 2 cut(s) 285, 299
Tru9I TTAA 2 cut(s) 285, 299
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 3 cut(s) 152, 200, 248
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 316
XceI RCATGY 1 cut(s) 51
XspI CTAG 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.