RchiOBHm_Chr7g0223991

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000280
Physical Location & Seq
Forward (+)
45869772 .. 45871924
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20056

Sequence Viewer

Length: 2034 bp
ATGAGAATCCAGGCGACGCCGTCGAGATTGTGGCCCCGAGGCTCGAAGCGGCCGAACATATGGGGAATTCAGAACGACGACGGAACAAATGGGGAAGAAGATGGTGGAGGATCGTCTGTGGAGCCACTGCCAAAGCTTGTTCCCTGGGGGAGGAAGCGGCGGAGGCTAGGATGCGAGGGTTTTTGGGCAAATCAAAATGAAGGAAACGCAAGGGCTGTGAGGGTGAAGAAGAATAAGAAGAAGAAGAAGCAGCAGCAGCAGCAGCAGAGAAGGGCTCCCTTGGAGGTGCAGCAGCAGAGTAGGGATAAACAAGAACCACTACCTAGCTACCTGCAGAGAAGGGCTCCCTTGAAGGTACGGACAATCAAGTGCCATCAATGTAAGCAAAATGATATGGGAAGAGCGGTGCGGTGCACAAAGTGTTCGAGGAAGAGGTATTGTATCCCTTGCATAAGGACTTGGTATCCCAACACCTCAGAGGAAGCCATAGCTGAGGCTTGTCCTGCGTGCCGCGGCAACTGCAACTGCAATGTCTGCCTTTGTTGGGGTGTGCCTGTCAGGAATCTGAACCCGAAAATCGACAAGGAGGCCAAGCTGGAGCACTCTAAGTATTTGGTTCATCAGCTGCTTCCGTATTTGAAGATGATTAGGGATGAGCAGGTGAGTGAGATGGTGGTGGAAGCCAAGAGGCAGGGCTTACGTGACCTTTCGGAGCTCAAGGTGGACAAGGCTAAAAGCGGTGGTGACCAAGTGCGTATGTACTGCAACAGCTGCAGCACTTCGATTTTTGATTTTCATAGGACTTGTCCCGGGTGTGAGTATGATCTGTGCCTCGGCTGCTGCCGGGAGATTCGAGATGGCAAGTGGAACAAGAGAGCTCAAGCGTCCACATTTGAGTGGAAATGGAGAGCAAGTGAAGGCGGAAACATTTTCTGCCCACCAACACACATGAAAGGTTGTGGTAAGCATAATTTAGAATTGAGATGCATTTTTCCTCAGAATCATGTCATGGAGTTGGTAGAGAAAGCAGAAGAAATAGATGCAAGTTACAATTTTTTGCCTGATTATAGTGAAACATGTGCATATAAGTGTTCATGTGTTAAACCTGTGGATGATGCCGTTAGCTCAAGTAGCAGCAGTTGTAAGTTAAGGAAAGCAGCTTCTAGAGTTGCTTCTGATAGTGACTACTTGTTCTGTCCAAGGGTTGGACAAATTCAAGATAAGGATTTTGGGCATTTTCAGTGGCATTGGAAGAGGGGGGAGCCTGTGATCGTTAGCAATGCACTTGAAAATGGATCAGGTTTAAGCTGGGAACCATCTGTCATGTGGCGGGCATTTAGACAGATAGAGAAAGTCAAGAATGATAGTGAATTGACATTCCACGCCATTGATTGTTGGGATTGGTGTTCTATAGAAATCAACATCCTCCATTTCTTTAGTGGATATTCCAACGGACGGTCTCATAAGACAGGATGGCCTCAGAATCTCAAGCTCAATGACTTCCCATCATCTGCTGAATTTTACAAACGTCTTCCCCGGCATTGTAAGGAATTTTTATGTTGTCTGCCTCTCAAGGAGTATACTCACCCCAACAAGGGAACTTTGAACCTTGCTACCTACTTGCCACCTACCTCAGTAAAGCCGGACATGGGTCCAAAAACATATATTGCCTATGGTTTTGCACAGGAGCTTGGACAGGGAGATTCCGTAACCAAGCTTCACTGCAATATGTCTGATGCTGTTAATATTCTGACACATACAGCTGAAGTGGCCCTTACAACTGAACAACTTGCAACTATAGAGAAGTTGAAGAAAAAGCACAGGGCGGAAAACGGGGATTGTCACACAAGTGCGGGAAATGGAAGTGGGCCTCAGCAAGAGTCAGCTATAGAGAAGTTAAAGAGAAAGTATAGGGAGCAAAACGAAAGAGAGATATTTGGGAATTGTCACACAAGTGCTGGAAGTGGAGGTGGGCCTCAGGATGAGTCAGCTGAAGTATGTGAAGATGGAGCATGTTACTCATGCTATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

677

Amino Acids

76.84

Weight (kDa)

8.85

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 121 - 180 1.9e-07 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 2 cut(s) 339, 649
AccB7I CCANNNNNTGG 1 cut(s) 1205
AccBSI CCGCTC 1 cut(s) 404
AccI GTMKAC 1 cut(s) 1580
AccII CGCG 1 cut(s) 513
AclWI GGATC 2 cut(s) 118, 1303
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 4 cut(s) 66, 1212, 1517, 1550
AcuI CTGAAG 2 cut(s) 1785, 2013
AcyI GRCGYC 1 cut(s) 17
AdeI CACNNNGTG 1 cut(s) 420
AfaI GTAC 2 cut(s) 357, 761
AfiI CCNNNNNNNGG 7 cut(s) 150, 544, 1205, 1455, 1594, 1595, 1649
AflIII ACRYGT 1 cut(s) 1076
AgsI TTSAA 6 cut(s) 352, 640, 1217, 1289, 1606, 1810
AjnI CCWGG 2 cut(s) 9, 143
AleI CACNNNNGTG 2 cut(s) 1848, 1953
Alw21I GWGCWC 4 cut(s) 416, 603, 717, 880
Alw26I GTCTC 1 cut(s) 1464
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 2 cut(s) 118, 1303
Ama87I CYCGRG 2 cut(s) 36, 809
AoxI GGCC 7 cut(s) 32, 50, 588, 1475, 1770, 1868, 1973
ApaLI GTGCAC 1 cut(s) 412
ApoI RAATTY 4 cut(s) 66, 1212, 1517, 1550
AspS9I GGNCC 5 cut(s) 33, 1652, 1771, 1868, 1973
AsuC2I CCSGG 4 cut(s) 810, 811, 845, 1537
AsuHPI GGTGA 4 cut(s) 235, 673, 755, 1577
AvaI CYCGRG 2 cut(s) 36, 809
AvaII GGWCC 1 cut(s) 1652
AxyI CCTNAGG 1 cut(s) 1977
BaeGI GKGCMC 1 cut(s) 416
BanII GRGCYC 4 cut(s) 277, 346, 717, 880
BarI GAAGNNNNNNTAC 2 cut(s) 1701, 1733
BbsI GAAGAC 1 cut(s) 1523
Bbv12I GWGCWC 4 cut(s) 416, 603, 717, 880
BbvCI CCTCAGC 2 cut(s) 492, 1872
BccI CCATC 8 cut(s) 95, 381, 664, 851, 1324, 1467, 1513, 2000
BceAI ACGGC 2 cut(s) 4, 1103
BciT130I CCWGG 2 cut(s) 11, 145
BciVI GTATCC 2 cut(s) 452, 474
BcnI CCSGG 4 cut(s) 810, 811, 845, 1537
BcoDI GTCTC 1 cut(s) 1464
BfaI CTAG 3 cut(s) 167, 324, 1164
BfmI CTRYAG 5 cut(s) 332, 772, 1410, 1797, 1887
BfuAI ACCTGC 2 cut(s) 339, 649
BfuI GTATCC 2 cut(s) 452, 474
Bme1390I CCNGG 6 cut(s) 11, 145, 810, 811, 845, 1537
Bme18I GGWCC 1 cut(s) 1652
BmeT110I CYCGRG 2 cut(s) 36, 809
BmgT120I GGNCC 5 cut(s) 33, 1652, 1771, 1868, 1973
BmiI GGNNCC 7 cut(s) 35, 123, 276, 345, 1263, 1314, 1653
BmrFI CCNGG 6 cut(s) 11, 145, 810, 811, 845, 1537
BmsI GCATC 5 cut(s) 161, 974, 1030, 1105, 1726
BoxI GACNNNNGTC 1 cut(s) 1650
BpiI GAAGAC 1 cut(s) 1523
BplI GAGNNNNNCTC 4 cut(s) 259, 291, 328, 360
BpmI CTGGAG 1 cut(s) 617
Bpu10I CCTNAGC 2 cut(s) 492, 1872
BpuEI CTTGAG 5 cut(s) 701, 864, 1111, 1472, 1556
BpuMI CCSGG 4 cut(s) 810, 811, 845, 1537
BsaAI YACGTR 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 1464
BsaJI CCNNGG 9 cut(s) 37, 143, 144, 279, 511, 809, 832, 1199, 1535
BsaXI ACNNNNNCTCC 4 cut(s) 898, 928, 1692, 1722
Bsc4I CCNNNNNNNGG 7 cut(s) 150, 544, 1205, 1455, 1594, 1595, 1649
Bse21I CCTNAGG 1 cut(s) 1977
Bse3DI GCAATG 2 cut(s) 535, 1285
BseBI CCWGG 2 cut(s) 11, 145
BseDI CCNNGG 9 cut(s) 37, 143, 144, 279, 511, 809, 832, 1199, 1535
BseGI GGATG 6 cut(s) 176, 658, 1117, 1422, 1478, 1987
BseLI CCNNNNNNNGG 7 cut(s) 150, 544, 1205, 1455, 1594, 1595, 1649
BseMI GCAATG 2 cut(s) 535, 1285
BseMII CTCAG 7 cut(s) 483, 489, 1010, 1493, 1647, 1886, 1991
BseSI GKGCMC 1 cut(s) 416
BseX3I CGGCCG 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 1308
BsgI GTGCAG 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 513
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 7 cut(s) 34, 52, 590, 1477, 1772, 1870, 1975
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 4 cut(s) 416, 603, 717, 880
BsiHKCI CYCGRG 2 cut(s) 36, 809
BsiSI CCGG 4 cut(s) 810, 844, 1537, 1643
BslFI GGGAC 1 cut(s) 792
BslI CCNNNNNNNGG 7 cut(s) 150, 544, 1205, 1455, 1594, 1595, 1649
BsmAI GTCTC 1 cut(s) 1464
BsmFI GGGAC 1 cut(s) 792
BsnI GGCC 7 cut(s) 34, 52, 590, 1477, 1772, 1870, 1975
Bso31I GGTCTC 1 cut(s) 1464
BsoBI CYCGRG 2 cut(s) 36, 809
Bsp1286I GDGCHC 6 cut(s) 277, 346, 416, 603, 717, 880
Bsp143I GATC 4 cut(s) 110, 823, 1269, 1295
BspANI GGCC 7 cut(s) 34, 52, 590, 1477, 1772, 1870, 1975
BspCNI CTCAG 7 cut(s) 484, 488, 1009, 1492, 1646, 1885, 1990
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 7 cut(s) 35, 123, 276, 345, 1263, 1314, 1653
BspMAI CTGCAG 2 cut(s) 336, 776
BspMI ACCTGC 2 cut(s) 339, 649
BspPI GGATC 2 cut(s) 118, 1303
BspQI GCTCTTC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 1464
BsrBI CCGCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 535, 1285
BssECI CCNNGG 9 cut(s) 37, 143, 144, 279, 511, 809, 832, 1199, 1535
BssMI GATC 4 cut(s) 110, 823, 1269, 1295
BssNAI GTATAC 1 cut(s) 1581
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 2 cut(s) 279, 1199
Bst1107I GTATAC 1 cut(s) 1581
Bst2UI CCWGG 2 cut(s) 11, 145
Bst4CI ACNGT 1 cut(s) 1458
Bst6I CTCTTC 3 cut(s) 394, 425, 1247
BstACI GRCGYC 1 cut(s) 17
BstAPI GCANNNNNTGC 2 cut(s) 534, 771
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 508, 1332
BstDEI CTNAG 8 cut(s) 475, 492, 606, 996, 1479, 1633, 1872, 1977
BstDSI CCRYGG 1 cut(s) 511
BstEII GGTNACC 1 cut(s) 743
BstENI CCTNNNNNAGG 1 cut(s) 148
BstF5I GGATG 6 cut(s) 176, 658, 1117, 1422, 1478, 1987
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 4 cut(s) 113, 826, 1272, 1298
BstMAI GTCTC 1 cut(s) 1464
BstMBI GATC 4 cut(s) 110, 823, 1269, 1295
BstMCI CGRYCG 1 cut(s) 53
BstNI CCWGG 2 cut(s) 11, 145
BstNSI RCATGY 2 cut(s) 1080, 2016
BstPAI GACNNNNGTC 1 cut(s) 1650
BstPI GGTNACC 1 cut(s) 743
BstSCI CCNGG 6 cut(s) 9, 143, 808, 809, 843, 1535
BstSFI CTRYAG 5 cut(s) 332, 772, 1410, 1797, 1887
BstSLI GKGCMC 1 cut(s) 416
BstUI CGCG 1 cut(s) 513
BstV2I GAAGAC 1 cut(s) 1523
BstZ17I GTATAC 1 cut(s) 1581
BstZI CGGCCG 1 cut(s) 50
Bsu36I CCTNAGG 1 cut(s) 1977
BsuI GTATCC 2 cut(s) 452, 474
BsuRI GGCC 7 cut(s) 34, 52, 590, 1477, 1772, 1870, 1975
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 6 cut(s) 176, 658, 1117, 1422, 1478, 1987
BtsI GCAGTG 2 cut(s) 125, 1720
BtsIMutI CAGTG 3 cut(s) 125, 1247, 1720
BveI ACCTGC 2 cut(s) 339, 649
Cac8I GCNNGC 2 cut(s) 508, 1332
Cfr13I GGNCC 5 cut(s) 33, 1652, 1771, 1868, 1973
Cfr42I CCGCGG 1 cut(s) 514
Cfr9I CCCGGG 1 cut(s) 809
CseI GACGC 2 cut(s) 25, 873
Csp6I GTAC 2 cut(s) 356, 760
CviQI GTAC 2 cut(s) 356, 760
DdeI CTNAG 8 cut(s) 475, 492, 606, 996, 1479, 1633, 1872, 1977
DpnI GATC 4 cut(s) 112, 825, 1271, 1297
DpnII GATC 4 cut(s) 110, 823, 1269, 1295
DraIII CACNNNGTG 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 50
EagI CGGCCG 1 cut(s) 50
Eam1104I CTCTTC 3 cut(s) 394, 425, 1247
EarI CTCTTC 3 cut(s) 394, 425, 1247
EciI GGCGGA 3 cut(s) 175, 936, 1841
Ecl136II GAGCTC 2 cut(s) 715, 878
EclXI CGGCCG 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 279, 1199
Eco24I GRGCYC 4 cut(s) 277, 346, 717, 880
Eco31I GGTCTC 1 cut(s) 1464
Eco47I GGWCC 1 cut(s) 1652
Eco52I CGGCCG 1 cut(s) 50
Eco53kI GAGCTC 2 cut(s) 715, 878
Eco57I CTGAAG 2 cut(s) 1785, 2013
Eco81I CCTNAGG 1 cut(s) 1977
Eco88I CYCGRG 2 cut(s) 36, 809
Eco91I GGTNACC 1 cut(s) 743
EcoICRI GAGCTC 2 cut(s) 715, 878
EcoNI CCTNNNNNAGG 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 743
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 9, 143
EcoT14I CCWWGG 2 cut(s) 279, 1199
EcoT22I ATGCAT 1 cut(s) 989
EcoT38I GRGCYC 4 cut(s) 277, 346, 717, 880
ErhI CCWWGG 2 cut(s) 279, 1199
FalI AAGNNNNNCTT 2 cut(s) 1758, 1790
FaqI GGGAC 1 cut(s) 792
FauI CCCGC 2 cut(s) 1323, 1846
FauNDI CATATG 1 cut(s) 59
FblI GTMKAC 1 cut(s) 1580
FokI GGATG 6 cut(s) 183, 665, 1124, 1409, 1485, 1994
FriOI GRGCYC 4 cut(s) 277, 346, 717, 880
FspBI CTAG 3 cut(s) 167, 324, 1164
GsaI CCCAGC 1 cut(s) 1312
GsuI CTGGAG 1 cut(s) 617
HaeIII GGCC 7 cut(s) 34, 52, 590, 1477, 1772, 1870, 1975
HapII CCGG 4 cut(s) 810, 844, 1537, 1643
HgaI GACGC 2 cut(s) 25, 873
Hin1I GRCGYC 1 cut(s) 17
HindIII AAGCTT 2 cut(s) 134, 1715
HinfI GANTC 8 cut(s) 6, 562, 850, 1000, 1483, 1703, 1880, 1985
HpaII CCGG 4 cut(s) 810, 844, 1537, 1643
HphI GGTGA 4 cut(s) 235, 673, 755, 1577
Hpy166II GTNNAC 4 cut(s) 414, 724, 888, 1581
Hpy188I TCNGA 9 cut(s) 72, 478, 567, 712, 999, 1177, 1482, 1735, 1752
Hpy188III TCNNGA 7 cut(s) 24, 559, 854, 1164, 1217, 1357, 1979
Hpy8I GTNNAC 4 cut(s) 414, 724, 888, 1581
Hpy99I CGWCG 4 cut(s) 19, 25, 80, 83
HpyAV CCTTC 5 cut(s) 194, 264, 333, 346, 911
HpyCH4III ACNGT 1 cut(s) 1458
HpyCH4IV ACGT 2 cut(s) 700, 1528
HpyF3I CTNAG 8 cut(s) 475, 492, 606, 996, 1479, 1633, 1872, 1977
HpySE526I ACGT 2 cut(s) 700, 1528
Hsp92I GRCGYC 1 cut(s) 17
KspI CCGCGG 1 cut(s) 514
Kzo9I GATC 4 cut(s) 110, 823, 1269, 1295
LguI GCTCTTC 1 cut(s) 394
LmnI GCTCC 9 cut(s) 121, 280, 349, 598, 712, 1261, 1687, 1915, 2009
LweI GCATC 5 cut(s) 161, 974, 1030, 1105, 1726
MaeI CTAG 3 cut(s) 167, 324, 1164
MaeII ACGT 2 cut(s) 700, 1528
MaeIII GTNAC 8 cut(s) 701, 743, 1046, 1181, 1708, 1841, 1946, 2015
MalI GATC 4 cut(s) 112, 825, 1271, 1297
MbiI CCGCTC 1 cut(s) 404
MboI GATC 4 cut(s) 110, 823, 1269, 1295
MhlI GDGCHC 6 cut(s) 277, 346, 416, 603, 717, 880
MluCI AATT 9 cut(s) 66, 970, 977, 1051, 1212, 1370, 1517, 1550, 1942
MlyI GAGTC 2 cut(s) 1889, 1994
MmeI TCCRAC 2 cut(s) 1186, 1473
Mph1103I ATGCAT 1 cut(s) 989
MseI TTAA 5 cut(s) 1101, 1148, 1304, 1743, 1898
MslI CAYNNNNRTG 4 cut(s) 895, 1087, 1848, 1953
MspA1I CMGCKG 5 cut(s) 513, 625, 771, 1763, 1991
MspI CCGG 4 cut(s) 810, 844, 1537, 1643
MspR9I CCNGG 6 cut(s) 11, 145, 810, 811, 845, 1537
MvaI CCWGG 2 cut(s) 11, 145
MvnI CGCG 1 cut(s) 513
NciI CCSGG 4 cut(s) 810, 811, 845, 1537
NdeI CATATG 1 cut(s) 59
NdeII GATC 4 cut(s) 110, 823, 1269, 1295
NlaIV GGNNCC 7 cut(s) 35, 123, 276, 345, 1263, 1314, 1653
NmeAIII GCCGAG 1 cut(s) 813
NmuCI GTSAC 5 cut(s) 701, 743, 1181, 1841, 1946
NsiI ATGCAT 1 cut(s) 989
NspI RCATGY 2 cut(s) 1080, 2016
OliI CACNNNNGTG 2 cut(s) 1848, 1953
PaqCI CACCTGC 1 cut(s) 649
PasI CCCWGGG 1 cut(s) 144
PciI ACATGT 1 cut(s) 1076
PciSI GCTCTTC 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 6 cut(s) 6, 562, 850, 1000, 1483, 1703
PflFI GACNNNGTC 1 cut(s) 19
PflMI CCANNNNNTGG 1 cut(s) 1205
PleI GAGTC 2 cut(s) 1888, 1993
PpsI GAGTC 2 cut(s) 1888, 1993
Ppu21I YACGTR 1 cut(s) 701
PscI ACATGT 1 cut(s) 1076
PshAI GACNNNNGTC 1 cut(s) 1650
Psp124BI GAGCTC 2 cut(s) 717, 880
Psp6I CCWGG 2 cut(s) 9, 143
PspEI GGTNACC 1 cut(s) 743
PspFI CCCAGC 1 cut(s) 1308
PspGI CCWGG 2 cut(s) 9, 143
PspN4I GGNNCC 7 cut(s) 35, 123, 276, 345, 1263, 1314, 1653
PspPI GGNCC 5 cut(s) 33, 1652, 1771, 1868, 1973
PstI CTGCAG 2 cut(s) 336, 776
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 4 cut(s) 625, 771, 1763, 1991
RsaI GTAC 2 cut(s) 357, 761
RsaNI GTAC 2 cut(s) 356, 760
RseI CAYNNNNRTG 4 cut(s) 895, 1087, 1848, 1953
SacI GAGCTC 2 cut(s) 717, 880
SacII CCGCGG 1 cut(s) 514
SapI GCTCTTC 1 cut(s) 394
SaqAI TTAA 5 cut(s) 1101, 1148, 1304, 1743, 1898
Sau3AI GATC 4 cut(s) 110, 823, 1269, 1295
Sau96I GGNCC 5 cut(s) 33, 1652, 1771, 1868, 1973
SchI GAGTC 2 cut(s) 1889, 1994
ScrFI CCNGG 6 cut(s) 11, 145, 810, 811, 845, 1537
SduI GDGCHC 6 cut(s) 277, 346, 416, 603, 717, 880
SfaNI GCATC 5 cut(s) 161, 974, 1030, 1105, 1726
SfcI CTRYAG 5 cut(s) 332, 772, 1410, 1797, 1887
Sfr303I CCGCGG 1 cut(s) 514
SgrBI CCGCGG 1 cut(s) 514
SinI GGWCC 1 cut(s) 1652
SmaI CCCGGG 1 cut(s) 811
SmiMI CAYNNNNRTG 4 cut(s) 895, 1087, 1848, 1953
SmlI CTYRAG 5 cut(s) 716, 879, 1126, 1487, 1571
SmoI CTYRAG 5 cut(s) 716, 879, 1126, 1487, 1571
Sse9I AATT 9 cut(s) 66, 970, 977, 1051, 1212, 1370, 1517, 1550, 1942
SspI AATATT 1 cut(s) 1747
SspMI CTAG 3 cut(s) 167, 324, 1164
SstI GAGCTC 2 cut(s) 717, 880
StyD4I CCNGG 6 cut(s) 9, 143, 808, 809, 843, 1535
StyI CCWWGG 2 cut(s) 279, 1199
TaaI ACNGT 1 cut(s) 1458
TaiI ACGT 2 cut(s) 703, 1531
TaqI TCGA 6 cut(s) 23, 44, 425, 579, 782, 853
TasI AATT 9 cut(s) 66, 970, 977, 1051, 1212, 1370, 1517, 1550, 1942
TatI WGTACW 1 cut(s) 759
TauI GCSGC 4 cut(s) 52, 160, 513, 516
TfiI GAWTC 6 cut(s) 6, 562, 850, 1000, 1483, 1703
Tru1I TTAA 5 cut(s) 1101, 1148, 1304, 1743, 1898
Tru9I TTAA 5 cut(s) 1101, 1148, 1304, 1743, 1898
TscAI CASTG 3 cut(s) 132, 1247, 1727
TseFI GTSAC 5 cut(s) 701, 743, 1181, 1841, 1946
Tsp45I GTSAC 5 cut(s) 701, 743, 1181, 1841, 1946
TspDTI ATGAA 5 cut(s) 213, 608, 785, 965, 1083
TspGWI ACGGA 5 cut(s) 96, 373, 621, 1467, 1696
TspMI CCCGGG 1 cut(s) 809
TspRI CASTG 3 cut(s) 132, 1247, 1727
Tth111I GACNNNGTC 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 1205
VneI GTGCAC 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 1652
XagI CCTNNNNNAGG 1 cut(s) 148
XapI RAATTY 4 cut(s) 66, 1212, 1517, 1550
XbaI TCTAGA 1 cut(s) 1163
XceI RCATGY 2 cut(s) 1080, 2016
XcmI CCANNNNNNNNNTGG 2 cut(s) 1323, 1436
XmaI CCCGGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 1580
XspI CTAG 3 cut(s) 167, 324, 1164
Zsp2I ATGCAT 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.