Rmu_sc0007777.1_g000009

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007777.1
OG0000280
Physical Location & Seq
Forward (+)
46730 .. 48382
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007777.1_g000009.1.cds

Sequence Viewer

Length: 1080 bp
atggaatctgagaggtttggagaaaatggtgatgtgggttttggtaaagagggagtgagagatgaaaatgaagagggtttagtgaagactgagcatgttaatggggttgtggagaagaatggaagatggagcagagcagatgtgtcgacaatgtgtcatcaatgtcagagaaatgataatgggagagttgttcgttgcagagggtgttcaagaaggggagagaggaagcggtattgtattccttgcataaagaaatggtatcccaattcatcagaggaggatgttgctgaggcttgtcctgtttgccttgggaattgtaattgcaaagcgtgcttgcgtttggatgtgcctctgagatgcttcaagaatcgagacttggagattggggaagacgagaggctagagcagtgtaagtatttggtgaatcggttgcttccttatttgaagaggattaatgatgaacaggtgagtgagatgaagtttgaggctgagaagcaagggttggtagagtttgaggagatggaaatcgaaaagtctaattgccgggttggtgagaggatgtattgcaacaactgcaagacttcgattttcgactttcatagaagctgtcctggatgccaatatgatctgtgtcttaagtgttgccgggagattcggggtggagagttgaagggaggtgaggaggaaatggttgagaaatatggaaagtggggatttgagtgtttcgatggtgagggaaatattattcggaggaatggtgtgggaactaggagcttaggtcttctcctgcaaagtcaaagtttgaatggaaagcagataaaaatggaagcattcgttggcccacagagcacatggaaggttgcgtgtcaaaaagcagcttgtagaggtgaatcgaaggacaactatttgttctgtcctatggttgaaagcattcaacccgaggattttgagcattttcagaggcattggattaggtggttgagtcccatgtggatggcttttcgtcaagttaataatacaaagcatgagaaggatgtggaagtccaggccattgaagctggtggttcatccgatacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

359

Amino Acids

41.35

Weight (kDa)

6.03

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 146
AciI CCGC 1 cut(s) 229
AflII CTTAAG 1 cut(s) 635
AgsI TTSAA 8 cut(s) 210, 364, 445, 670, 805, 926, 935, 1055
AhdI GACNNNNNGTC 1 cut(s) 153
AjnI CCWGG 2 cut(s) 610, 1044
AjuI GAANNNNNNNTTGG 6 cut(s) 359, 391, 485, 517, 819, 851
AluBI AGCT 4 cut(s) 606, 774, 878, 1058
AluI AGCT 4 cut(s) 606, 774, 878, 1058
Alw21I GWGCWC 1 cut(s) 851
Alw26I GTCTC 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 938
AoxI GGCC 2 cut(s) 838, 1047
ApeKI GCWGC 1 cut(s) 875
AseI ATTAAT 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 930
AspS9I GGNCC 1 cut(s) 839
AsuC2I CCSGG 2 cut(s) 545, 647
AsuHPI GGTGA 7 cut(s) 41, 433, 478, 563, 689, 743, 899
AvaI CYCGRG 1 cut(s) 938
BbsI GAAGAC 3 cut(s) 92, 396, 773
Bbv12I GWGCWC 1 cut(s) 851
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 887
BccI CCATC 4 cut(s) 120, 514, 722, 988
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 2 cut(s) 612, 1046
BciVI GTATCC 1 cut(s) 270
BcnI CCSGG 2 cut(s) 545, 647
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 2 cut(s) 401, 768
BfrI CTTAAG 1 cut(s) 635
BfuI GTATCC 1 cut(s) 270
BisI GCNGC 1 cut(s) 876
BlsI GCNGC 1 cut(s) 877
Bme1390I CCNGG 4 cut(s) 545, 612, 647, 1046
BmeRI GACNNNNNGTC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 938
BmgT120I GGNCC 1 cut(s) 839
BmrFI CCNGG 4 cut(s) 545, 612, 647, 1046
BmsI GCATC 2 cut(s) 347, 605
BpiI GAAGAC 3 cut(s) 92, 396, 773
Bpu10I CCTNAGC 2 cut(s) 288, 775
BpuMI CCSGG 2 cut(s) 545, 647
BsaBI GATNNNNATC 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 307, 939
BsaXI ACNNNNNCTCC 4 cut(s) 742, 763, 772, 793
Bse8I GATNNNNATC 1 cut(s) 524
BseBI CCWGG 2 cut(s) 612, 1046
BseDI CCNNGG 2 cut(s) 307, 939
BseGI GGATG 7 cut(s) 286, 349, 564, 620, 999, 1039, 1067
BseJI GATNNNNATC 1 cut(s) 524
BseMII CTCAG 4 cut(s) 81, 279, 344, 480
BseRI GAGGAG 3 cut(s) 290, 530, 695
BseXI GCAGC 1 cut(s) 887
BshFI GGCC 2 cut(s) 840, 1049
BsiHKAI GWGCWC 1 cut(s) 851
BsiHKCI CYCGRG 1 cut(s) 938
BsiSI CCGG 2 cut(s) 544, 646
BslFI GGGAC 1 cut(s) 969
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 969
BsmI GAATGC 2 cut(s) 830, 930
BsnI GGCC 2 cut(s) 840, 1049
BsoBI CYCGRG 1 cut(s) 938
Bsp1286I GDGCHC 1 cut(s) 851
Bsp143I GATC 1 cut(s) 625
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 840, 1049
BspCNI CTCAG 4 cut(s) 82, 280, 345, 481
BspTI CTTAAG 1 cut(s) 635
BssECI CCNNGG 2 cut(s) 307, 939
BssMI GATC 1 cut(s) 625
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 2 cut(s) 612, 1046
Bst6I CTCTTC 2 cut(s) 66, 440
BstAFI CTTAAG 1 cut(s) 635
BstAPI GCANNNNNTGC 2 cut(s) 330, 573
BstC8I GCNNGC 2 cut(s) 331, 335
BstDEI CTNAG 6 cut(s) 9, 90, 288, 353, 489, 775
BstF5I GGATG 7 cut(s) 286, 349, 564, 620, 999, 1039, 1067
BstKTI GATC 1 cut(s) 628
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 1 cut(s) 625
BstMWI GCNNNNNNNGC 4 cut(s) 330, 573, 846, 1055
BstNI CCWGG 2 cut(s) 612, 1046
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 4 cut(s) 543, 610, 645, 1044
BstV1I GCAGC 1 cut(s) 887
BstV2I GAAGAC 3 cut(s) 92, 396, 773
BstXI CCANNNNNNTGG 1 cut(s) 994
BsuI GTATCC 1 cut(s) 270
BsuRI GGCC 2 cut(s) 840, 1049
BtsCI GGATG 7 cut(s) 286, 349, 564, 620, 999, 1039, 1067
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 331, 335
Cfr13I GGNCC 1 cut(s) 839
CviAII CATG 5 cut(s) 95, 852, 988, 1025, 1077
DdeI CTNAG 6 cut(s) 9, 90, 288, 353, 489, 775
DpnI GATC 1 cut(s) 627
DpnII GATC 1 cut(s) 625
DriI GACNNNNNGTC 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 66, 440
Eam1105I GACNNNNNGTC 1 cut(s) 153
EarI CTCTTC 2 cut(s) 66, 440
Eco130I CCWWGG 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 938
EcoRII CCWGG 2 cut(s) 610, 1044
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 5 cut(s) 98, 855, 991, 1028, 1080
FaqI GGGAC 1 cut(s) 969
FatI CATG 5 cut(s) 94, 851, 987, 1024, 1076
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 876
FokI GGATG 7 cut(s) 293, 356, 571, 627, 1006, 1046, 1054
Fsp4HI GCNGC 1 cut(s) 876
FspBI CTAG 2 cut(s) 401, 768
GluI GCNGC 1 cut(s) 876
HaeIII GGCC 2 cut(s) 840, 1049
HapII CCGG 2 cut(s) 544, 646
Hin1II CATG 5 cut(s) 98, 855, 991, 1028, 1080
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 6 cut(s) 5, 367, 424, 652, 890, 982
HpaII CCGG 2 cut(s) 544, 646
HphI GGTGA 7 cut(s) 41, 433, 478, 563, 689, 743, 899
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 7 cut(s) 10, 168, 274, 354, 750, 960, 1072
Hpy188III TCNNGA 3 cut(s) 210, 364, 371
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 5 cut(s) 207, 664, 850, 889, 1024
HpyCH4V TGCA 6 cut(s) 198, 246, 324, 567, 576, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 330, 573, 846, 1055
HpyF3I CTNAG 6 cut(s) 9, 90, 288, 353, 489, 775
Hsp92II CATG 5 cut(s) 98, 855, 991, 1028, 1080
Kzo9I GATC 1 cut(s) 625
LmnI GCTCC 2 cut(s) 129, 771
Lsp1109I GCAGC 1 cut(s) 887
LweI GCATC 2 cut(s) 347, 605
MaeI CTAG 2 cut(s) 401, 768
MalI GATC 1 cut(s) 627
MboI GATC 1 cut(s) 625
MboII GAAGA 7 cut(s) 83, 97, 127, 135, 401, 457, 773
MhlI GDGCHC 1 cut(s) 851
MluCI AATT 4 cut(s) 265, 313, 319, 538
MlyI GAGTC 1 cut(s) 991
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 4 cut(s) 99, 453, 636, 1011
MslI CAYNNNNRTG 2 cut(s) 99, 992
MspCI CTTAAG 1 cut(s) 635
MspI CCGG 2 cut(s) 544, 646
MspR9I CCNGG 4 cut(s) 545, 612, 647, 1046
Mva1269I GAATGC 2 cut(s) 830, 930
MvaI CCWGG 2 cut(s) 612, 1046
MwoI GCNNNNNNNGC 4 cut(s) 330, 573, 846, 1055
NciI CCSGG 2 cut(s) 545, 647
NdeII GATC 1 cut(s) 625
NlaIII CATG 5 cut(s) 98, 855, 991, 1028, 1080
NspI RCATGY 1 cut(s) 98
PctI GAATGC 2 cut(s) 830, 930
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 5 cut(s) 5, 367, 424, 652, 890
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 1 cut(s) 877
PleI GAGTC 1 cut(s) 990
PpsI GAGTC 1 cut(s) 990
PshBI ATTAAT 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 610, 1044
PspGI CCWGG 2 cut(s) 610, 1044
PspPI GGNCC 1 cut(s) 839
RseI CAYNNNNRTG 2 cut(s) 99, 992
SalI GTCGAC 1 cut(s) 145
SaqAI TTAA 4 cut(s) 99, 453, 636, 1011
SatI GCNGC 1 cut(s) 876
Sau3AI GATC 1 cut(s) 625
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 1 cut(s) 991
ScrFI CCNGG 4 cut(s) 545, 612, 647, 1046
SduI GDGCHC 1 cut(s) 851
SfaNI GCATC 2 cut(s) 347, 605
SmiMI CAYNNNNRTG 2 cut(s) 99, 992
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 4 cut(s) 265, 313, 319, 538
SsiI CCGC 1 cut(s) 229
SspI AATATT 1 cut(s) 742
SspMI CTAG 2 cut(s) 401, 768
StyD4I CCNGG 4 cut(s) 543, 610, 645, 1044
StyI CCWWGG 1 cut(s) 307
TaqI TCGA 7 cut(s) 146, 370, 528, 584, 591, 726, 893
TasI AATT 4 cut(s) 265, 313, 319, 538
TfiI GAWTC 5 cut(s) 5, 367, 424, 652, 890
Tru1I TTAA 4 cut(s) 99, 453, 636, 1011
Tru9I TTAA 4 cut(s) 99, 453, 636, 1011
TscAI CASTG 1 cut(s) 413
TseI GCWGC 1 cut(s) 875
TspDTI ATGAA 7 cut(s) 78, 84, 258, 474, 491, 587, 1056
TspRI CASTG 1 cut(s) 413
Vha464I CTTAAG 1 cut(s) 635
VspI ATTAAT 1 cut(s) 453
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 849
XmiI GTMKAC 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 2 cut(s) 401, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.