Rmu_co8191480.1_g000001

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8191480.1
OG0000280
Physical Location & Seq
Reverse (-)
1 .. 458
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8191480.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
atgcagctagatatcggtatccgccaattttttactggatatttggagggccagtttgatgggaaaatgtggcctcgtattctgaaactcaacgatcagtcccttgatgattatttggagaagcgccttcctcgtcattgtgctgagtttatttgttgcttgccatttaaggaatatacccatcctcgcagtggcctcctgaaccttgctgtaaaattgcctatggagtgtgtaaagccagacatggggccaaaaatggatattgcttatggtgtgtcccaggagcttggacgtggagattcagtaactaagcttcactgtgattcatgtgatgtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

112

Amino Acids

12.83

Weight (kDa)

5.87

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 191, 245
AjiI CACGTC 1 cut(s) 293
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 3 cut(s) 7, 286, 313
AluI AGCT 3 cut(s) 7, 286, 313
AoxI GGCC 4 cut(s) 49, 71, 193, 248
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 49, 248
BarI GAAGNNNNNNTAC 2 cut(s) 297, 329
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 53, 189
BciT130I CCWGG 1 cut(s) 281
BciVI GTATCC 1 cut(s) 29
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 127
BfuI GTATCC 1 cut(s) 29
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 49, 248
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 245
Bse1I ACTGG 2 cut(s) 40, 52
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 191, 245
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 40, 52
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 4 cut(s) 51, 73, 195, 250
BslFI GGGAC 2 cut(s) 85, 262
BslI CCNNNNNNNGG 2 cut(s) 191, 245
BsmFI GGGAC 2 cut(s) 85, 262
BsnI GGCC 4 cut(s) 51, 73, 195, 250
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 22
BspANI GGCC 4 cut(s) 51, 73, 195, 250
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 40, 52
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 144, 309
BstF5I GGATG 1 cut(s) 181
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 16
BstXI CCANNNNNNTGG 2 cut(s) 59, 287
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 4 cut(s) 51, 73, 195, 250
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 196, 316
Cac8I GCNNGC 1 cut(s) 161
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 49, 248
CviAII CATG 2 cut(s) 244, 327
CviJI RGCY 8 cut(s) 7, 51, 73, 195, 238, 250, 286, 313
CviKI_1 RGCY 8 cut(s) 7, 51, 73, 195, 238, 250, 286, 313
DdeI CTNAG 2 cut(s) 144, 309
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EciI GGCGGA 1 cut(s) 11
Eco32I GATATC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 279
EcoRV GATATC 1 cut(s) 13
FaeI CATG 2 cut(s) 247, 330
FaiI YATR 5 cut(s) 177, 224, 245, 270, 328
FaqI GGGAC 2 cut(s) 85, 262
FatI CATG 2 cut(s) 243, 326
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 5
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 4 cut(s) 51, 73, 195, 250
HhaI GCGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 247, 330
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 2 cut(s) 299, 323
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 144, 309
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 2 cut(s) 247, 330
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 6 cut(s) 21, 65, 212, 252, 266, 293
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MluCI AATT 2 cut(s) 26, 215
MnlI CCTC 5 cut(s) 40, 84, 141, 195, 206
MseI TTAA 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 247, 330
NlaIV GGNNCC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 299, 323
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 49, 248
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 49, 248
ScrFI CCNGG 1 cut(s) 281
SetI ASST 5 cut(s) 9, 207, 288, 295, 315
Sse9I AATT 2 cut(s) 26, 215
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 295
TasI AATT 2 cut(s) 26, 215
TfiI GAWTC 2 cut(s) 299, 323
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 196, 323
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 2 cut(s) 196, 323
XcmI CCANNNNNNNNNTGG 2 cut(s) 32, 188
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.