pycom06g01040

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
1027725 .. 1036040
8316 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01040.6

Sequence Viewer

Length: 3132 bp
ATGGCGAGGGGAAGAGGGAGAGGCAGAGGGAGAGGAAGACCAAGAAGGGTGCCGGAAAATCATGGGTCCACCACCAGTGTCGAAAAGGATGGTGCTTTAGAGGCGGAGGAGGTGGGTTTGGAGAATCAGAGTGAAGGGTTGAAAAAGGAAGTGGAAGAGGTTGCTGCTGTAACTGAGAAGAAGAAGCGCGGTAGGAAAAGGAAGACTGATTTGGAGGCTGAGAAGGCCGCGGAAGGCGGCGACGGAGGTGCTTCTGCCGCCAAGGAGGAAGGGGAGGCGGAGGAGGAGGGGGTTTTGGGAAATCATAATGGAACACTCGGGGAAGAAGCTAAGGGAGTCGAATTGAATCAGAATGGAGCACAACGTCGAAGCAAGAGAAGCAGAAATATGGGGGTGGAGTATTTGGAGAAAGATGAGCAAGAAAGCGGGGACGAATGCAGACACAATGGCGGTGCTTCTGTGAAGAAGCGCGGCGGGAGAGGTCGGAAAAAGTTGAGATTTGTAGAGGGAAGGGGAAGAACTGTTGGTTTGGAAGAGAATGGTGTAGTTGATGAGTCGAAATCGGAGCGCAGAGGAGACAATGGAAATAGGGCCCCTAAAAAACGTGATAATGGGGATAGGGAGAATGCAGAAGATGAACAAGTGGGGCATTCTGATGACACCGATACGGGGAAAGAAGGTTTGCGAAGAAACAAGAGAGCAGATTATTCAATTAGGGGCGTCAAGTATCCTATGAACCAGGGAGAAGGAAAAGTAAATAAGCAGTCCAAGAAATTTGTTGAGGAGGTGTCGTTGATGTGCCATCAATGTCAGAGGAATGACAAAGGCCGGGTAGTTCGCTGCAAAGAGTGTAAGAGGAAGCGATTTTGTATTCCTTGCATACAGAACTGGTACCCTTGTACATCAGAGGATGCCATTGCTGAATCTTGTCCAGTATGCCGAAAAAATTGCAATTGCAAAGCATGCTTGCGCTTAGATTATCAGTCTGAGAAGGATGTTTACCCTGAATTTGAAGTTACCAAGGAGGAGAAAGTTGAGCACTCTAAGTATTTGGTCCATACTTTGCTTCCATTTTTGAAAAGACTTAATGCTGAACAAGTGACGGAGATGGAGATGGAGGCTACAAGACAAGGGATATCCCCTTTGGAGCTAAAGACAGAAAAATCAGATGTAGATCCTGATGAGCGTGTGTTTTGCAACAACTGCAAAACTTCTATCTTTGACTTTCACAGAAGCTGTCCTGGATGTTCATATGACCTCTGCCTTATCTGTTGTGGGGAGATTCGAGATGGACGCTTGAAGGGAGGTGGGGAAGAAGTGATTATGGAATATGTGAGTCGAGGCCTAGACTATTTGCATGGTGGGGAGGGAAAAGTGAAACTGCCTTTGGAAGCTTGCCCCAAGTCTTCTGTTGGATCAACATTTGAGTGGAAACCAAATGATAATGGAAGTATTCCTTGTCCTCCGAAGGACATGGGTGGTTGTGGTGATGGTATATTAGAATTGAGATGTGTGTTTCCCGAAAATCACCTTATGGAGTTGGTAAAGAAAGCAGAAGAGATAGATGAAACTTACAAACTTATGAATGCAAGTGAAACTGCTGCAGGGATGTGTTCATGTCTCAAATCTGTTGATGATGTTAACTCAAGCACTAAAATAAGGAAAGCGGCTTCTAGAGATGCTTCGGATGATAACTACTTGTACTGTCCAAGGGCTGTAGATATCCAGCATGAGGATCTGAAGCATTTCCAGTGCCATTGGGTTAAGGGTGAGCCTGTAATTGTGAGCAATGTGCTCGAAACTACTTTAGGCTTAAGCTGGGAGCCATTCGTCATGTGGCGGGCTTGTCGTCAAATGCAACATATAAAGCATGGTCAACATTTGGATGTCAAGACTATCGACTGCTTGGATTGGTGTGAGGCGGATATCAATATACACCAATTTTTTACTGGGTATTCGCAAGGTCGGTTTGACTGGAAAAAGTGGCCCCAGATTCTGAAACTGAAAGATTGGCCGCCATCTACTTTATTTGAGAAGCGCCTTCCTCGTCATGGTGCCGAGTTTATAAATTGTTTGCCATTCAAGGAATATACTCATCTTAGAAATGGTTATTTAAACATTGCTACCAAATTGCCTGATAAATGTGTAAAGCCAGACATGGGGCCTAAGACATATATAGCTTATGGTGTTGCACAGGAGCTTGGACGTGGAGATTCTGTTACGAAGCTTCATTGTGATATGTCGGATGCAGTCAATGTCTTGACACATACCACTGAAGTGACTCTTAATCCTAAGCAGCTTGCCACTATAGAAGAGTTGAAGAAAAAACATTTTGAGCAAGACCAAAGGGAACTTTTTGGGAATTGTCAGACTCGGGTTGACTGTTTGGAGAGTGACAATCCAGATAGTGGTATATCAGTTCAGGAGGCGGATGAACCAACTGTTCGGCATGATGGAGATATTTCAAAGGGGTCTTTGAGTGTGGAGGAAAAAATGGATCATGATGAAGGTGGTGAAAATTGTGAGGATTCGCGAAACAGTGTGAATAAGTTGGAAGGGTCAATTGAAGCTGAGGGAGGTGCTTTGTGGGACATTTTCCGGAGACAGGATGTTCCTAAGCTGCAAGAATATCTCAGGAAGCACTATAAGGAATTCAGGCATACACACTGTTGTCCGTTGCCTCAGGTTATTCATCCCATACATGATCAAACCTTTTATCTGACCGTGGAGCATAAAAAGAAGCTCAAGGAAGAATACGGAATTGAACCGTGGACGTTTGTCCAAAATCTTGGGGACGCTGTCTTTATTCCTGCAGGCTGTCCGCATCAAGTCAGAAACTTGAAGTCATGCATCAAAGTTGCATTGGATTTCGTTTCACCTGAAAATGTTGGTGAGTGCTTCCAGATGACAGAAGAATTCCGAAAACTTCCACCAAATCATAGGGCCAAAGAGGACAAGTTGGAGGTCAAGAAAATGATTGTTCATGCTGTTGAGGATGCTTTGGATCCGAATGCGAGGTCCAAGAAAACTACTGGTCCATCACCGAAAGGTAAGAAAGGTCAAAAGCGAGGGCGAAAGAAAGCCAAGACCGTGAAAGGTAAGGGAGGTTCCTCAGCCGTCATCGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1044

Amino Acids

117.5

Weight (kDa)

6.82

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2066
Acc65I GGTACC 1 cut(s) 891
AccB1I GGYRCC 3 cut(s) 49, 891, 2054
AccB7I CCANNNNNTGG 1 cut(s) 2408
AccII CGCG 4 cut(s) 189, 230, 471, 2533
AccIII TCCGGA 1 cut(s) 2598
AclWI GGATC 6 cut(s) 1169, 1423, 1743, 2505, 2999, 3012
AcoI YGGCCR 1 cut(s) 2012
AcsI RAATTY 4 cut(s) 773, 1007, 2651, 2915
AcuI CTGAAG 2 cut(s) 1760, 2295
AcyI GRCGYC 1 cut(s) 720
AfaI GTAC 3 cut(s) 893, 901, 1703
AfiI CCNNNNNNNGG 6 cut(s) 669, 1732, 2051, 2159, 2408, 2605
AflII CTTAAG 1 cut(s) 1813
AjiI CACGTC 1 cut(s) 2207
AjnI CCWGG 2 cut(s) 738, 1240
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 1370, 1402
AleI CACNNNNGTG 1 cut(s) 2276
Alw21I GWGCWC 3 cut(s) 361, 1041, 1797
Alw26I GTCTC 3 cut(s) 570, 1625, 2596
AlwI GGATC 6 cut(s) 1169, 1423, 1743, 2505, 2999, 3012
AlwNI CAGNNNCTG 2 cut(s) 1236, 1996
Ama87I CYCGRG 2 cut(s) 317, 2373
Aor13HI TCCGGA 1 cut(s) 2598
AoxI GGCC 8 cut(s) 225, 591, 826, 1342, 1985, 2012, 2162, 2943
ApaI GGGCCC 1 cut(s) 595
ApeKI GCWGC 5 cut(s) 164, 840, 1601, 2296, 2620
ApoI RAATTY 4 cut(s) 773, 1007, 2651, 2915
ArsI GACNNNNNNTTYG 2 cut(s) 3002, 3034
Asp700I GAANNNNTTC 1 cut(s) 1745
Asp718I GGTACC 1 cut(s) 891
AspLEI GCGC 5 cut(s) 189, 471, 570, 972, 2040
AspS9I GGNCC 9 cut(s) 66, 591, 592, 1054, 1986, 2162, 2943, 3018, 3035
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 7 cut(s) 1499, 1520, 1781, 2525, 2868, 2903, 3033
AvaI CYCGRG 2 cut(s) 317, 2373
AvaII GGWCC 4 cut(s) 66, 1054, 3018, 3035
AxyI CCTNAGG 1 cut(s) 2682
BaeGI GKGCMC 1 cut(s) 595
BaeI ACNNNNGTAYC 2 cut(s) 883, 916
BamHI GGATCC 1 cut(s) 3004
BanI GGYRCC 3 cut(s) 49, 891, 2054
BanII GRGCYC 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 983, 1015
BbsI GAAGAC 3 cut(s) 43, 209, 1398
Bbv12I GWGCWC 3 cut(s) 361, 1041, 1797
BbvCI CCTCAGC 2 cut(s) 2571, 3112
BbvI GCAGC 5 cut(s) 151, 827, 1588, 2308, 2607
BccI CCATC 9 cut(s) 83, 810, 1102, 1108, 1283, 1484, 2026, 2447, 3046
BceAI ACGGC 1 cut(s) 3101
BcgI CGANNNNNNTGC 6 cut(s) 230, 264, 930, 964, 1777, 1811
BciT130I CCWGG 2 cut(s) 740, 1242
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 1 cut(s) 2704
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 3 cut(s) 570, 1625, 2596
BfaI CTAG 2 cut(s) 1346, 1674
BfmI CTRYAG 4 cut(s) 1602, 1716, 2307, 2811
BfoI RGCGCY 1 cut(s) 2041
BfrI CTTAAG 1 cut(s) 1813
BfuI GTATCC 1 cut(s) 738
Bme1390I CCNGG 3 cut(s) 740, 830, 1242
Bme18I GGWCC 4 cut(s) 66, 1054, 3018, 3035
BmeT110I CYCGRG 2 cut(s) 317, 2373
BmgBI CACGTC 1 cut(s) 2207
BmgT120I GGNCC 9 cut(s) 66, 591, 592, 1054, 1986, 2162, 2943, 3018, 3035
BmrFI CCNGG 3 cut(s) 740, 830, 1242
BmrI ACTGGG 1 cut(s) 1959
BmsI GCATC 6 cut(s) 901, 1669, 2236, 2833, 2859, 2986
BmuI ACTGGG 1 cut(s) 1959
BoxI GACNNNNGTC 1 cut(s) 2777
BpiI GAAGAC 3 cut(s) 43, 209, 1398
Bpu10I CCTNAGC 5 cut(s) 330, 2292, 2571, 2616, 3112
BpuEI CTTGAG 2 cut(s) 1630, 2729
BpuMI CCSGG 1 cut(s) 830
BsaBI GATNNNNATC 1 cut(s) 1173
BsaHI GRCGYC 1 cut(s) 720
BsaJI CCNNGG 7 cut(s) 228, 261, 739, 1020, 1709, 2724, 2768
BsaWI WCCGGW 1 cut(s) 2598
BsaXI ACNNNNNCTCC 4 cut(s) 776, 806, 2202, 2232
Bsc4I CCNNNNNNNGG 6 cut(s) 669, 1732, 2051, 2159, 2408, 2605
Bse1I ACTGG 7 cut(s) 75, 893, 932, 1750, 1954, 1979, 3037
Bse21I CCTNAGG 1 cut(s) 2682
Bse3DI GCAATG 3 cut(s) 915, 1795, 2118
Bse8I GATNNNNATC 1 cut(s) 1173
BseAI TCCGGA 1 cut(s) 2598
BseBI CCWGG 2 cut(s) 740, 1242
BseDI CCNNGG 7 cut(s) 228, 261, 739, 1020, 1709, 2724, 2768
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 6 cut(s) 669, 1732, 2051, 2159, 2408, 2605
BseMI GCAATG 3 cut(s) 915, 1795, 2118
BseMII CTCAG 7 cut(s) 165, 210, 978, 2562, 2647, 2696, 3126
BseNI ACTGG 7 cut(s) 75, 893, 932, 1750, 1954, 1979, 3037
BseRI GAGGAG 6 cut(s) 122, 296, 299, 588, 797, 1040
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 5 cut(s) 151, 827, 1588, 2308, 2607
BseYI CCCAGC 1 cut(s) 1818
Bsh1236I CGCG 4 cut(s) 189, 230, 471, 2533
BshFI GGCC 8 cut(s) 227, 593, 828, 1344, 1987, 2014, 2164, 2945
BshNI GGYRCC 3 cut(s) 49, 891, 2054
BsiHKAI GWGCWC 3 cut(s) 361, 1041, 1797
BsiHKCI CYCGRG 2 cut(s) 317, 2373
BsiSI CCGG 3 cut(s) 53, 829, 2599
BslFI GGGAC 3 cut(s) 443, 2603, 2807
BslI CCNNNNNNNGG 6 cut(s) 669, 1732, 2051, 2159, 2408, 2605
BsmAI GTCTC 3 cut(s) 570, 1625, 2596
BsmFI GGGAC 3 cut(s) 443, 2603, 2807
BsmI GAATGC 5 cut(s) 440, 631, 649, 1591, 3016
BsnI GGCC 8 cut(s) 227, 593, 828, 1344, 1987, 2014, 2164, 2945
BsoBI CYCGRG 2 cut(s) 317, 2373
Bsp120I GGGCCC 1 cut(s) 591
Bsp1286I GDGCHC 4 cut(s) 361, 595, 1041, 1797
Bsp13I TCCGGA 1 cut(s) 2598
Bsp1407I TGTACA 1 cut(s) 899
Bsp143I GATC 6 cut(s) 1174, 1415, 1735, 2497, 2704, 3004
Bsp68I TCGCGA 1 cut(s) 2533
BspANI GGCC 8 cut(s) 227, 593, 828, 1344, 1987, 2014, 2164, 2945
BspCNI CTCAG 7 cut(s) 166, 211, 979, 2563, 2646, 2695, 3125
BspEI TCCGGA 1 cut(s) 2598
BspFNI CGCG 4 cut(s) 189, 230, 471, 2533
BspHI TCATGA 1 cut(s) 2500
BspMAI CTGCAG 2 cut(s) 1606, 2815
BspPI GGATC 6 cut(s) 1169, 1423, 1743, 2505, 2999, 3012
BspT107I GGYRCC 3 cut(s) 49, 891, 2054
BspTI CTTAAG 1 cut(s) 1813
BsrDI GCAATG 3 cut(s) 915, 1795, 2118
BsrGI TGTACA 1 cut(s) 899
BsrI ACTGG 7 cut(s) 75, 893, 932, 1750, 1954, 1979, 3037
BssECI CCNNGG 7 cut(s) 228, 261, 739, 1020, 1709, 2724, 2768
BssMI GATC 6 cut(s) 1174, 1415, 1735, 2497, 2704, 3004
BssNI GRCGYC 1 cut(s) 720
BssT1I CCWWGG 3 cut(s) 261, 1020, 1709
Bst2UI CCWGG 2 cut(s) 740, 1242
Bst4CI ACNGT 9 cut(s) 523, 1706, 2384, 2443, 2540, 2669, 2725, 2769, 3091
Bst6I CTCTTC 5 cut(s) 7, 150, 528, 1551, 2307
BstACI GRCGYC 1 cut(s) 720
BstAFI CTTAAG 1 cut(s) 1813
BstAPI GCANNNNNTGC 2 cut(s) 963, 1203
BstAUI TGTACA 1 cut(s) 899
BstC8I GCNNGC 6 cut(s) 964, 968, 1396, 1842, 2301, 2815
BstDSI CCRYGG 3 cut(s) 228, 2724, 2768
BstFNI CGCG 4 cut(s) 189, 230, 471, 2533
BstH2I RGCGCY 1 cut(s) 2041
BstHHI GCGC 5 cut(s) 189, 471, 570, 972, 2040
BstKTI GATC 6 cut(s) 1177, 1418, 1738, 2500, 2707, 3007
BstMAI GTCTC 3 cut(s) 570, 1625, 2596
BstMBI GATC 6 cut(s) 1174, 1415, 1735, 2497, 2704, 3004
BstMWI GCNNNNNNNGC 6 cut(s) 101, 224, 257, 378, 963, 1203
BstNI CCWGG 2 cut(s) 740, 1242
BstNSI RCATGY 1 cut(s) 966
BstPAI GACNNNNGTC 1 cut(s) 2777
BstSCI CCNGG 3 cut(s) 738, 828, 1240
BstSFI CTRYAG 4 cut(s) 1602, 1716, 2307, 2811
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 4 cut(s) 189, 230, 471, 2533
BstV1I GCAGC 5 cut(s) 151, 827, 1588, 2308, 2607
BstV2I GAAGAC 3 cut(s) 43, 209, 1398
BstX2I RGATCY 3 cut(s) 1174, 1735, 3004
BstXI CCANNNNNNTGG 1 cut(s) 2789
BstYI RGATCY 3 cut(s) 1174, 1735, 3004
Bsu36I CCTNAGG 1 cut(s) 2682
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 8 cut(s) 227, 593, 828, 1344, 1987, 2014, 2164, 2945
BtgI CCRYGG 3 cut(s) 228, 2724, 2768
BtrI CACGTC 1 cut(s) 2207
BtsIMutI CAGTG 5 cut(s) 82, 1757, 2271, 2545, 2665
BtuMI TCGCGA 1 cut(s) 2533
Cac8I GCNNGC 6 cut(s) 964, 968, 1396, 1842, 2301, 2815
CaiI CAGNNNCTG 2 cut(s) 1236, 1996
CciI TCATGA 1 cut(s) 2500
CfoI GCGC 5 cut(s) 189, 471, 570, 972, 2040
Cfr13I GGNCC 9 cut(s) 66, 591, 592, 1054, 1986, 2162, 2943, 3018, 3035
Cfr42I CCGCGG 1 cut(s) 231
CseI GACGC 3 cut(s) 709, 1302, 2804
Csp6I GTAC 3 cut(s) 892, 900, 1702
CviQI GTAC 3 cut(s) 892, 900, 1702
DpnI GATC 6 cut(s) 1176, 1417, 1737, 2499, 2706, 3006
DpnII GATC 6 cut(s) 1174, 1415, 1735, 2497, 2704, 3004
DraI TTTAAA 1 cut(s) 2115
EaeI YGGCCR 1 cut(s) 2012
Eam1104I CTCTTC 5 cut(s) 7, 150, 528, 1551, 2307
EarI CTCTTC 5 cut(s) 7, 150, 528, 1551, 2307
EciI GGCGGA 4 cut(s) 119, 293, 1937, 2444
Eco130I CCWWGG 3 cut(s) 261, 1020, 1709
Eco147I AGGCCT 1 cut(s) 1344
Eco24I GRGCYC 1 cut(s) 595
Eco32I GATATC 3 cut(s) 1137, 1723, 1927
Eco47I GGWCC 4 cut(s) 66, 1054, 3018, 3035
Eco57I CTGAAG 2 cut(s) 1760, 2295
Eco81I CCTNAGG 1 cut(s) 2682
Eco88I CYCGRG 2 cut(s) 317, 2373
EcoO109I RGGNCCY 3 cut(s) 591, 592, 2162
EcoRI GAATTC 2 cut(s) 2651, 2915
EcoRII CCWGG 2 cut(s) 738, 1240
EcoRV GATATC 3 cut(s) 1137, 1723, 1927
EcoT14I CCWWGG 3 cut(s) 261, 1020, 1709
EcoT22I ATGCAT 1 cut(s) 2852
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 3 cut(s) 261, 1020, 1709
FalI AAGNNNNNCTT 4 cut(s) 1441, 1473, 2268, 2300
FaqI GGGAC 3 cut(s) 443, 2603, 2807
FauI CCCGC 3 cut(s) 419, 467, 1833
FauNDI CATATG 1 cut(s) 1252
FbaI TGATCA 1 cut(s) 2704
FriOI GRGCYC 1 cut(s) 595
FspBI CTAG 2 cut(s) 1346, 1674
GlaI GCGC 5 cut(s) 188, 470, 569, 971, 2039
GsaI CCCAGC 1 cut(s) 1822
HaeII RGCGCY 1 cut(s) 2041
HaeIII GGCC 8 cut(s) 227, 593, 828, 1344, 1987, 2014, 2164, 2945
HapII CCGG 3 cut(s) 53, 829, 2599
HgaI GACGC 3 cut(s) 709, 1302, 2804
HhaI GCGC 5 cut(s) 189, 471, 570, 972, 2040
Hin1I GRCGYC 1 cut(s) 720
Hin6I GCGC 5 cut(s) 187, 469, 568, 970, 2038
HinP1I GCGC 5 cut(s) 187, 469, 568, 970, 2038
HincII GTYRAC 3 cut(s) 1642, 1877, 2380
HindII GTYRAC 3 cut(s) 1642, 1877, 2380
HindIII AAGCTT 2 cut(s) 1392, 2225
HpaI GTTAAC 1 cut(s) 1642
HpaII CCGG 3 cut(s) 53, 829, 2599
HphI GGTGA 7 cut(s) 1499, 1520, 1781, 2525, 2868, 2903, 3033
Hpy166II GTNNAC 6 cut(s) 69, 1000, 1642, 1877, 2380, 2772
Hpy8I GTNNAC 6 cut(s) 69, 1000, 1642, 1877, 2380, 2772
Hpy99I CGWCG 2 cut(s) 245, 369
HpyCH4III ACNGT 9 cut(s) 523, 1706, 2384, 2443, 2540, 2669, 2725, 2769, 3091
HpyCH4IV ACGT 4 cut(s) 364, 604, 2206, 2774
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 224, 257, 378, 963, 1203
HpySE526I ACGT 4 cut(s) 364, 604, 2206, 2774
Hsp92I GRCGYC 1 cut(s) 720
HspAI GCGC 5 cut(s) 187, 469, 568, 970, 2038
Kpn2I TCCGGA 1 cut(s) 2598
KpnI GGTACC 1 cut(s) 895
Ksp22I TGATCA 1 cut(s) 2704
KspAI GTTAAC 1 cut(s) 1642
KspI CCGCGG 1 cut(s) 231
Kzo9I GATC 6 cut(s) 1174, 1415, 1735, 2497, 2704, 3004
LmnI GCTCC 6 cut(s) 356, 565, 1147, 1822, 2197, 2728
Lsp1109I GCAGC 5 cut(s) 151, 827, 1588, 2308, 2607
LweI GCATC 6 cut(s) 901, 1669, 2236, 2833, 2859, 2986
MaeI CTAG 2 cut(s) 1346, 1674
MaeII ACGT 4 cut(s) 364, 604, 2206, 2774
MaeIII GTNAC 6 cut(s) 169, 1015, 1099, 2218, 2278, 2393
MalI GATC 6 cut(s) 1176, 1417, 1737, 2499, 2706, 3006
MboI GATC 6 cut(s) 1174, 1415, 1735, 2497, 2704, 3004
MfeI CAATTG 2 cut(s) 952, 2562
MflI RGATCY 3 cut(s) 1174, 1735, 3004
MhlI GDGCHC 4 cut(s) 361, 595, 1041, 1797
MlyI GAGTC 5 cut(s) 345, 563, 1345, 2275, 2365
MmeI TCCRAC 5 cut(s) 464, 1393, 2223, 2532, 2940
Mph1103I ATGCAT 1 cut(s) 2852
MroI TCCGGA 1 cut(s) 2598
MroXI GAANNNNTTC 1 cut(s) 1745
MseI TTAA 6 cut(s) 1086, 1641, 1764, 1814, 2114, 2286
MslI CAYNNNNRTG 4 cut(s) 654, 1426, 1884, 2276
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 1813
MspI CCGG 3 cut(s) 53, 829, 2599
MspR9I CCNGG 3 cut(s) 740, 830, 1242
MunI CAATTG 2 cut(s) 952, 2562
Mva1269I GAATGC 5 cut(s) 440, 631, 649, 1591, 3016
MvaI CCWGG 2 cut(s) 740, 1242
MvnI CGCG 4 cut(s) 189, 230, 471, 2533
MwoI GCNNNNNNNGC 6 cut(s) 101, 224, 257, 378, 963, 1203
NciI CCSGG 1 cut(s) 830
NdeI CATATG 1 cut(s) 1252
NdeII GATC 6 cut(s) 1174, 1415, 1735, 2497, 2704, 3004
NmeAIII GCCGAG 1 cut(s) 2083
NmuCI GTSAC 3 cut(s) 1099, 2278, 2393
NruI TCGCGA 1 cut(s) 2533
NsiI ATGCAT 1 cut(s) 2852
NspI RCATGY 1 cut(s) 966
OliI CACNNNNGTG 1 cut(s) 2276
PaeI GCATGC 1 cut(s) 966
PagI TCATGA 1 cut(s) 2500
PceI AGGCCT 1 cut(s) 1344
PctI GAATGC 5 cut(s) 440, 631, 649, 1591, 3016
PdmI GAANNNNTTC 1 cut(s) 1745
PfeI GAWTC 7 cut(s) 124, 346, 923, 1282, 1993, 2213, 2528
PflFI GACNNNGTC 1 cut(s) 2798
PflMI CCANNNNNTGG 1 cut(s) 2408
PfoI TCCNGGA 1 cut(s) 1240
PleI GAGTC 5 cut(s) 344, 562, 1344, 2275, 2365
PpsI GAGTC 5 cut(s) 344, 562, 1344, 2275, 2365
PshAI GACNNNNGTC 1 cut(s) 2777
PsiI TTATAA 1 cut(s) 2066
Psp6I CCWGG 2 cut(s) 738, 1240
PspFI CCCAGC 1 cut(s) 1818
PspGI CCWGG 2 cut(s) 738, 1240
PspOMI GGGCCC 1 cut(s) 591
PspPI GGNCC 9 cut(s) 66, 591, 592, 1054, 1986, 2162, 2943, 3018, 3035
PsrI GAACNNNNNNTAC 2 cut(s) 3091, 3123
PstI CTGCAG 2 cut(s) 1606, 2815
PstNI CAGNNNCTG 2 cut(s) 1236, 1996
PsuI RGATCY 3 cut(s) 1174, 1735, 3004
PsyI GACNNNGTC 1 cut(s) 2798
RruI TCGCGA 1 cut(s) 2533
RsaI GTAC 3 cut(s) 893, 901, 1703
RsaNI GTAC 3 cut(s) 892, 900, 1702
RseI CAYNNNNRTG 4 cut(s) 654, 1426, 1884, 2276
SacII CCGCGG 1 cut(s) 231
SaqAI TTAA 6 cut(s) 1086, 1641, 1764, 1814, 2114, 2286
Sau3AI GATC 6 cut(s) 1174, 1415, 1735, 2497, 2704, 3004
Sau96I GGNCC 9 cut(s) 66, 591, 592, 1054, 1986, 2162, 2943, 3018, 3035
SbfI CCTGCAGG 1 cut(s) 2815
SchI GAGTC 5 cut(s) 345, 563, 1345, 2275, 2365
ScrFI CCNGG 3 cut(s) 740, 830, 1242
SdaI CCTGCAGG 1 cut(s) 2815
SduI GDGCHC 4 cut(s) 361, 595, 1041, 1797
SfaNI GCATC 6 cut(s) 901, 1669, 2236, 2833, 2859, 2986
SfcI CTRYAG 4 cut(s) 1602, 1716, 2307, 2811
Sfr303I CCGCGG 1 cut(s) 231
SgrBI CCGCGG 1 cut(s) 231
SinI GGWCC 4 cut(s) 66, 1054, 3018, 3035
SmiMI CAYNNNNRTG 4 cut(s) 654, 1426, 1884, 2276
SmlI CTYRAG 3 cut(s) 1645, 1813, 2744
SmoI CTYRAG 3 cut(s) 1645, 1813, 2744
SphI GCATGC 1 cut(s) 966
Sse8387I CCTGCAGG 1 cut(s) 2815
SseBI AGGCCT 1 cut(s) 1344
SspMI CTAG 2 cut(s) 1346, 1674
StuI AGGCCT 1 cut(s) 1344
StyD4I CCNGG 3 cut(s) 738, 828, 1240
StyI CCWWGG 3 cut(s) 261, 1020, 1709
TaaI ACNGT 9 cut(s) 523, 1706, 2384, 2443, 2540, 2669, 2725, 2769, 3091
TaiI ACGT 4 cut(s) 367, 607, 2209, 2777
TaqI TCGA 9 cut(s) 81, 339, 367, 557, 1285, 1339, 1797, 1899, 3123
TatI WGTACW 2 cut(s) 899, 1701
TauI GCSGC 6 cut(s) 230, 240, 260, 474, 1670, 2017
TfiI GAWTC 7 cut(s) 124, 346, 923, 1282, 1993, 2213, 2528
Tru1I TTAA 6 cut(s) 1086, 1641, 1764, 1814, 2114, 2286
Tru9I TTAA 6 cut(s) 1086, 1641, 1764, 1814, 2114, 2286
TscAI CASTG 5 cut(s) 82, 1757, 2278, 2545, 2672
TseFI GTSAC 3 cut(s) 1099, 2278, 2393
TseI GCWGC 5 cut(s) 164, 840, 1601, 2296, 2620
Tsp45I GTSAC 3 cut(s) 1099, 2278, 2393
TspGWI ACGGA 4 cut(s) 258, 1118, 2664, 2772
TspRI CASTG 5 cut(s) 82, 1757, 2278, 2545, 2672
Tth111I GACNNNGTC 1 cut(s) 2798
Van91I CCANNNNNTGG 1 cut(s) 2408
Vha464I CTTAAG 1 cut(s) 1813
VpaK11BI GGWCC 4 cut(s) 66, 1054, 3018, 3035
XapI RAATTY 4 cut(s) 773, 1007, 2651, 2915
XbaI TCTAGA 1 cut(s) 1673
XceI RCATGY 1 cut(s) 966
XcmI CCANNNNNNNNNTGG 2 cut(s) 1833, 1946
XmnI GAANNNNTTC 1 cut(s) 1745
XspI CTAG 2 cut(s) 1346, 1674
Zsp2I ATGCAT 1 cut(s) 2852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.