pycom10g12640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000280
Physical Location & Seq
Reverse (-)
16105573 .. 16106326
754 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g12640.1

Sequence Viewer

Length: 306 bp
ATGTTTTTAAAACAATATTACGAGTCAGTTACCGCACGCTCTCACCTCCCTCTCGCTCTCTGCCTCTCTGGTTCTCGCTCTCCGCCTATCTCCCTCTCTTCAAAGCGAAAATCCTTCTCTGCCACTCTCGCCATAACTACTGATGCTGAGACACAATTGCACCAGATACTCGAATTCAACATCAACTCTTCTCATTCGCAAGAGAAGCAGAAACTTGGGGTGGAGTATTTGGAGAATGATGAGGAAGAAAGCGTTGATGAATGCAGACACAATGTCGGTACTTTTGTGAAGAAGCGCAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

6.42

Isoelectric Point (pI)

74.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 33, 83
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 1 cut(s) 280
AgsI TTSAA 2 cut(s) 102, 178
AhdI GACNNNNNGTC 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BcoDI GTCTC 1 cut(s) 143
BmeRI GACNNNNNGTC 1 cut(s) 272
BmsI GCATC 1 cut(s) 133
BseMII CTCAG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 266
BspACI CCGC 2 cut(s) 33, 83
BspCNI CTCAG 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 103, 193
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 143
BstMWI GCNNNNNNNGC 2 cut(s) 128, 205
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 279
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 147
DraI TTTAAA 1 cut(s) 9
DriI GACNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 2 cut(s) 103, 193
Eam1105I GACNNNNNGTC 1 cut(s) 272
EarI CTCTTC 2 cut(s) 103, 193
EciI GGCGGA 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 173
FaiI YATR 1 cut(s) 134
GlaI GCGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 297
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 160, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 205
HpyF3I CTNAG 1 cut(s) 147
HspAI GCGC 1 cut(s) 295
LpnPI CCDG 2 cut(s) 54, 176
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 4 cut(s) 90, 180, 257, 301
MfeI CAATTG 1 cut(s) 155
MluCI AATT 2 cut(s) 155, 173
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 5 cut(s) 56, 60, 74, 104, 235
MseI TTAA 1 cut(s) 8
MunI CAATTG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 128, 205
PctI GAATGC 1 cut(s) 266
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 8
SchI GAGTC 1 cut(s) 32
SetI ASST 1 cut(s) 48
SfaNI GCATC 1 cut(s) 133
Sse9I AATT 2 cut(s) 155, 173
SsiI CCGC 2 cut(s) 33, 83
SspI AATATT 1 cut(s) 17
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 155, 173
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 273
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.