Rmu_sc0007777.1_g000006

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007777.1
OG0000280
Physical Location & Seq
Forward (+)
24856 .. 31898
7043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007777.1_g000006.1.cds

Sequence Viewer

Length: 2376 bp
atgggttttaccaaactcttcctcttcttcttcttcctggtatcaaacccatctcaatcttatgctgctgagaatgtgagcgtgactctctactacgagactctgtgtccttattgtgaagatttcatagtgaaccatttggccaagatcttccagaatgggctcatctccatcgtcaatctcagaatggtcccttggggcaacgcttggctcaattccgatttctgcttcgcctgccaggtcagctttctcaaacccccaattgctcccccttcttttattttcagctactcactcaatataaaccacacacagtctcaagtcaagccctgggatctaatctcccaaatgggttttaccaaactcttcctcttcttcttcttcctggtatcaaacccatctcaatcttatgctgctgagaatgtgagcgtgactctctactacgagaatctgtgtccttattgtgtcgatttcatagtgaaccatttggccaagatcttccagaatgggctcatctccattgtcaatctcagaatggtcccttggggcaacgcttggctcaattccgatttctgcttcgcctgccaggactatgaaaattttgctggctatgtgtgcaaggcttacaaagagagcggcggtggtgtggtggagaagggcggcgagggtattttgggaattgaagacgaagagtcgactctgactctggccgtgatgttgaagcggctgcgtcggaaaaagaagatgggaaagagtgttctggagggtttagagcgtaaagatttgatctttggtgatcgaattgaagggcaaaaggggaaaggcgaagagggtgaggagaagaatcaaggaaatggggtttttgatgtgggttttggcagagagggagtgaatgatggaattgaagagggtttggtcatgaagaagaagaaatgtggtagaaagggtatgaaatatgagaggtttgaagaaaacggtgatgtgggttttggtatagagggagtgagaggtgaaaatgaagagggttcagtgaagactgagcaagttaatagggttgtggagaagaatggaagatggagcagtgcagatgtgtcgacaatgtgtcatcaatgtcagagaaatgatcatgggagagttgttcgttgcagagggtgttcagaaaggggagagaggaagcagtattgtattccttgcataaagaaatggtatcccaattcatcagaggaggattttgccgaggcttgtcctgtttgccttgggaattgtaattgcaaagcgtgcttgcgtttggatgtgcctctgagatacttcaagaatcgaaacttggagattggggaagacgagaggctagagcattgtaagtatttggtgaatcagttgcttccttatttgaagaggattaatgatgaacaggtgagtgagatgaaatttgaggctgagaaagaagggttggtggagtttgaggagaaggaaatcgaaaagtctaattgccgtgttggtgagaggatgtattgcaacaactgcaagacttcgatttttgactttcacagaagctgtcctggatgccaatatgatctgtgtcttaaatgttggcgggagattcggggaggagagttgaagggaggtggggaggaaatggttgagaaacatgggaatcggggatttgagtgtttcgatggtgagggaaagatttttcggaagaatggtgtgggaactaggaggctgaggtcttcttctgcaaattcaaagtttgaatggaaagcagataaagatggaagcattcgttgccccccagagcacatggaaggttgcggtaaaggtgattcgaaggacaattatttgttctgtccatgggatgaaagcattcaacccgaggattttgagcattttcagaggcattggatgaggtgtgagcctgttattgtgagcaatgcgcttgaaaatggttcagggttgagttgggaacccttagtcatgtcgagggcttttcgtcaagttaataatactaagcatgagaaggatgtggaagttcaggccattgattgcttggattggtgtttcatcgatgtcaatatgcataaatttttaactggatattctgaaggcatgtttgatacaaaagactgccctcggatcctaaaacttaaagactggccgccctccactgattttgataaacatcttcctcgccatggcaaggagtttgtgtgttgcttacctctcaaggaatacactcatccaacaggtagtattctaaaccttgcgtgtcacttgcccaaaagagctgtcaaacctgacttgaggccaaagacatacattgcatatggggttgctcaggaacttggacgaggagattgtgataaagcttcactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

791

Amino Acids

90.4

Weight (kDa)

6.26

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 636
AccI GTMKAC 2 cut(s) 695, 1094
AciI CCGC 7 cut(s) 636, 639, 660, 724, 1594, 1812, 2156
AclWI GGATC 3 cut(s) 342, 2128, 2141
AcoI YGGCCR 4 cut(s) 141, 489, 708, 2153
AcsI RAATTY 4 cut(s) 598, 1427, 1741, 2081
AcuI CTGAAG 1 cut(s) 2121
AfiI CCNNNNNNNGG 2 cut(s) 2192, 2197
AhdI GACNNNNNGTC 3 cut(s) 105, 691, 1101
AjnI CCWGG 6 cut(s) 36, 237, 329, 384, 585, 1558
AjuI GAANNNNNNNTTGG 8 cut(s) 178, 210, 526, 558, 1307, 1339, 1433, 1465
AloI GAACNNNNNNTCC 2 cut(s) 741, 773
AluBI AGCT 5 cut(s) 246, 288, 1554, 2285, 2366
AluI AGCT 5 cut(s) 246, 288, 1554, 2285, 2366
Alw21I GWGCWC 1 cut(s) 1800
Alw26I GTCTC 2 cut(s) 92, 321
AlwI GGATC 3 cut(s) 342, 2128, 2141
AlwNI CAGNNNCTG 1 cut(s) 1554
Ama87I CYCGRG 1 cut(s) 1871
AoxI GGCC 6 cut(s) 141, 489, 708, 2034, 2153, 2303
ApeKI GCWGC 3 cut(s) 65, 413, 727
ApoI RAATTY 4 cut(s) 598, 1427, 1741, 2081
ArsI GACNNNNNNTTYG 2 cut(s) 2271, 2303
AseI ATTAAT 1 cut(s) 1401
Asp700I GAANNNNTTC 1 cut(s) 1863
AspLEI GCGC 1 cut(s) 1936
AspS9I GGNCC 2 cut(s) 190, 538
AsuHPI GGTGA 9 cut(s) 806, 845, 989, 1022, 1381, 1426, 1511, 1691, 1832
AsuII TTCGAA 1 cut(s) 1826
AvaI CYCGRG 1 cut(s) 1871
AvaII GGWCC 2 cut(s) 190, 538
BalI TGGCCA 2 cut(s) 143, 491
BamHI GGATCC 1 cut(s) 2133
BanII GRGCYC 2 cut(s) 165, 513
BbsI GAAGAC 4 cut(s) 690, 1040, 1344, 1722
Bbv12I GWGCWC 1 cut(s) 1800
BbvCI CCTCAGC 1 cut(s) 1724
BbvI GCAGC 3 cut(s) 52, 400, 714
BccI CCATC 8 cut(s) 58, 179, 406, 739, 890, 1068, 1670, 1766
BceAI ACGGC 2 cut(s) 695, 1476
BcgI CGANNNNNNTGC 2 cut(s) 1074, 1108
BciT130I CCWGG 6 cut(s) 38, 239, 331, 386, 587, 1560
BciVI GTATCC 1 cut(s) 1218
BclI TGATCA 1 cut(s) 1123
BcoDI GTCTC 2 cut(s) 92, 321
BfaI CTAG 2 cut(s) 1349, 1716
BfuI GTATCC 1 cut(s) 1218
BglII AGATCT 2 cut(s) 147, 495
BisI GCNGC 7 cut(s) 66, 414, 637, 661, 725, 728, 2156
BlsI GCNGC 7 cut(s) 67, 415, 638, 662, 726, 729, 2157
Bme1390I CCNGG 6 cut(s) 38, 239, 331, 386, 587, 1560
Bme18I GGWCC 2 cut(s) 190, 538
BmeRI GACNNNNNGTC 3 cut(s) 105, 691, 1101
BmeT110I CYCGRG 1 cut(s) 1871
BmgT120I GGNCC 2 cut(s) 190, 538
BmiI GGNNCC 4 cut(s) 192, 540, 1965, 2135
BmrFI CCNGG 6 cut(s) 38, 239, 331, 386, 587, 1560
BmsI GCATC 1 cut(s) 1553
BpiI GAAGAC 4 cut(s) 690, 1040, 1344, 1722
BplI GAGNNNNNCTC 4 cut(s) 70, 102, 418, 450
BpmI CTGGAG 1 cut(s) 782
Bpu10I CCTNAGC 2 cut(s) 1724, 2334
Bpu14I TTCGAA 1 cut(s) 1826
BpuEI CTTGAG 3 cut(s) 303, 2207, 2320
Bsa29I ATCGAT 1 cut(s) 2064
BsaBI GATNNNNATC 1 cut(s) 2178
BsaXI ACNNNNNCTCC 2 cut(s) 2192, 2222
Bsc4I CCNNNNNNNGG 2 cut(s) 2192, 2197
Bse1I ACTGG 2 cut(s) 2095, 2156
Bse3DI GCAATG 2 cut(s) 1936, 2316
Bse8I GATNNNNATC 1 cut(s) 2178
BseBI CCWGG 6 cut(s) 38, 239, 331, 386, 587, 1560
BseCI ATCGAT 1 cut(s) 2064
BseGI GGATG 7 cut(s) 1297, 1512, 1568, 1861, 1908, 2026, 2236
BseJI GATNNNNATC 1 cut(s) 2178
BseLI CCNNNNNNNGG 2 cut(s) 2192, 2197
BseMI GCAATG 2 cut(s) 1936, 2316
BseMII CTCAG 9 cut(s) 60, 196, 408, 544, 1029, 1292, 1428, 1715, 2348
BseNI ACTGG 2 cut(s) 2095, 2156
BseRI GAGGAG 5 cut(s) 851, 1238, 1478, 1623, 2364
BseXI GCAGC 3 cut(s) 52, 400, 714
BsgI GTGCAG 1 cut(s) 1104
BshFI GGCC 6 cut(s) 143, 491, 710, 2036, 2155, 2305
BshVI ATCGAT 1 cut(s) 2064
BsiHKAI GWGCWC 1 cut(s) 1800
BsiHKCI CYCGRG 1 cut(s) 1871
BslFI GGGAC 2 cut(s) 176, 524
BslI CCNNNNNNNGG 2 cut(s) 2192, 2197
BsmAI GTCTC 2 cut(s) 92, 321
BsmFI GGGAC 2 cut(s) 176, 524
BsmI GAATGC 2 cut(s) 1779, 1863
BsnI GGCC 6 cut(s) 143, 491, 710, 2036, 2155, 2305
BsoBI CYCGRG 1 cut(s) 1871
Bsp119I TTCGAA 1 cut(s) 1826
Bsp1286I GDGCHC 3 cut(s) 165, 513, 1800
Bsp143I GATC 8 cut(s) 147, 334, 495, 786, 796, 1123, 1573, 2133
Bsp19I CCATGG 2 cut(s) 1850, 2191
BspACI CCGC 7 cut(s) 636, 639, 660, 724, 1594, 1812, 2156
BspANI GGCC 6 cut(s) 143, 491, 710, 2036, 2155, 2305
BspCNI CTCAG 9 cut(s) 61, 195, 409, 543, 1030, 1293, 1429, 1716, 2347
BspDI ATCGAT 1 cut(s) 2064
BspHI TCATGA 1 cut(s) 918
BspLI GGNNCC 4 cut(s) 192, 540, 1965, 2135
BspPI GGATC 3 cut(s) 342, 2128, 2141
BspT104I TTCGAA 1 cut(s) 1826
BsrBI CCGCTC 1 cut(s) 636
BsrDI GCAATG 2 cut(s) 1936, 2316
BsrI ACTGG 2 cut(s) 2095, 2156
BssMI GATC 8 cut(s) 147, 334, 495, 786, 796, 1123, 1573, 2133
BssT1I CCWWGG 5 cut(s) 194, 542, 1255, 1850, 2191
Bst2UI CCWGG 6 cut(s) 38, 239, 331, 386, 587, 1560
Bst4CI ACNGT 3 cut(s) 315, 977, 2373
Bst6I CTCTTC 9 cut(s) 23, 29, 371, 377, 684, 822, 900, 1014, 1388
BstAPI GCANNNNNTGC 3 cut(s) 1278, 1521, 1785
BstBI TTCGAA 1 cut(s) 1826
BstC8I GCNNGC 5 cut(s) 235, 583, 607, 1279, 1283
BstDSI CCRYGG 2 cut(s) 1850, 2191
BstF5I GGATG 7 cut(s) 1297, 1512, 1568, 1861, 1908, 2026, 2236
BstHHI GCGC 1 cut(s) 1936
BstKTI GATC 8 cut(s) 150, 337, 498, 789, 799, 1126, 1576, 2136
BstMAI GTCTC 2 cut(s) 92, 321
BstMBI GATC 8 cut(s) 147, 334, 495, 786, 796, 1123, 1573, 2133
BstMWI GCNNNNNNNGC 7 cut(s) 234, 243, 582, 615, 1278, 1521, 1785
BstNI CCWGG 6 cut(s) 38, 239, 331, 386, 587, 1560
BstNSI RCATGY 1 cut(s) 2110
BstSCI CCNGG 6 cut(s) 36, 237, 329, 384, 585, 1558
BstV1I GCAGC 3 cut(s) 52, 400, 714
BstV2I GAAGAC 4 cut(s) 690, 1040, 1344, 1722
BstX2I RGATCY 4 cut(s) 147, 334, 495, 2133
BstYI RGATCY 4 cut(s) 147, 334, 495, 2133
Bsu15I ATCGAT 1 cut(s) 2064
BsuI GTATCC 1 cut(s) 1218
BsuRI GGCC 6 cut(s) 143, 491, 710, 2036, 2155, 2305
BsuTUI ATCGAT 1 cut(s) 2064
BtgI CCRYGG 2 cut(s) 1850, 2191
BtsCI GGATG 7 cut(s) 1297, 1512, 1568, 1861, 1908, 2026, 2236
BtsI GCAGTG 1 cut(s) 1087
BtsIMutI CAGTG 4 cut(s) 1035, 1087, 2163, 2369
Cac8I GCNNGC 5 cut(s) 235, 583, 607, 1279, 1283
CaiI CAGNNNCTG 1 cut(s) 1554
CciI TCATGA 1 cut(s) 918
CfoI GCGC 1 cut(s) 1936
Cfr13I GGNCC 2 cut(s) 190, 538
ClaI ATCGAT 1 cut(s) 2064
CseI GACGC 1 cut(s) 719
CspCI CAANNNNNGTGG 2 cut(s) 2152, 2187
CviAII CATG 9 cut(s) 919, 1127, 1649, 1801, 1851, 1975, 2012, 2107, 2192
DpnI GATC 8 cut(s) 149, 336, 497, 788, 798, 1125, 1575, 2135
DpnII GATC 8 cut(s) 147, 334, 495, 786, 796, 1123, 1573, 2133
DriI GACNNNNNGTC 3 cut(s) 105, 691, 1101
EaeI YGGCCR 4 cut(s) 141, 489, 708, 2153
Eam1104I CTCTTC 9 cut(s) 23, 29, 371, 377, 684, 822, 900, 1014, 1388
Eam1105I GACNNNNNGTC 3 cut(s) 105, 691, 1101
EarI CTCTTC 9 cut(s) 23, 29, 371, 377, 684, 822, 900, 1014, 1388
Eco130I CCWWGG 5 cut(s) 194, 542, 1255, 1850, 2191
Eco24I GRGCYC 2 cut(s) 165, 513
Eco47I GGWCC 2 cut(s) 190, 538
Eco57I CTGAAG 1 cut(s) 2121
Eco88I CYCGRG 1 cut(s) 1871
EcoRII CCWGG 6 cut(s) 36, 237, 329, 384, 585, 1558
EcoT14I CCWWGG 5 cut(s) 194, 542, 1255, 1850, 2191
EcoT22I ATGCAT 1 cut(s) 2079
EcoT38I GRGCYC 2 cut(s) 165, 513
ErhI CCWWGG 5 cut(s) 194, 542, 1255, 1850, 2191
FaeI CATG 9 cut(s) 922, 1130, 1652, 1804, 1854, 1978, 2015, 2110, 2195
FaqI GGGAC 2 cut(s) 176, 524
FatI CATG 9 cut(s) 918, 1126, 1648, 1800, 1850, 1974, 2011, 2106, 2191
FauI CCCGC 1 cut(s) 1587
FauNDI CATATG 1 cut(s) 2323
FbaI TGATCA 1 cut(s) 1123
FblI GTMKAC 2 cut(s) 695, 1094
Fnu4HI GCNGC 7 cut(s) 66, 414, 637, 661, 725, 728, 2156
FokI GGATG 7 cut(s) 1304, 1519, 1575, 1868, 1915, 2033, 2223
FriOI GRGCYC 2 cut(s) 165, 513
Fsp4HI GCNGC 7 cut(s) 66, 414, 637, 661, 725, 728, 2156
FspBI CTAG 2 cut(s) 1349, 1716
GlaI GCGC 1 cut(s) 1935
GluI GCNGC 7 cut(s) 66, 414, 637, 661, 725, 728, 2156
GsuI CTGGAG 1 cut(s) 782
HaeIII GGCC 6 cut(s) 143, 491, 710, 2036, 2155, 2305
HgaI GACGC 1 cut(s) 719
HhaI GCGC 1 cut(s) 1936
Hin1II CATG 9 cut(s) 922, 1130, 1652, 1804, 1854, 1978, 2015, 2110, 2195
Hin6I GCGC 1 cut(s) 1934
HinP1I GCGC 1 cut(s) 1934
HincII GTYRAC 2 cut(s) 696, 1095
HindII GTYRAC 2 cut(s) 696, 1095
HindIII AAGCTT 1 cut(s) 2364
HphI GGTGA 9 cut(s) 806, 845, 989, 1022, 1381, 1426, 1511, 1691, 1832
Hpy166II GTNNAC 4 cut(s) 133, 481, 696, 1095
Hpy188III TCNNGA 6 cut(s) 154, 502, 761, 919, 1312, 2336
Hpy8I GTNNAC 4 cut(s) 133, 481, 696, 1095
Hpy99I CGWCG 1 cut(s) 735
HpyCH4III ACNGT 3 cut(s) 315, 977, 2373
HpyF10VI GCNNNNNNNGC 7 cut(s) 234, 243, 582, 615, 1278, 1521, 1785
Hsp92II CATG 9 cut(s) 922, 1130, 1652, 1804, 1854, 1978, 2015, 2110, 2195
HspAI GCGC 1 cut(s) 1934
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 8 cut(s) 147, 334, 495, 786, 796, 1123, 1573, 2133
LmnI GCTCC 2 cut(s) 271, 1077
Lsp1109I GCAGC 3 cut(s) 52, 400, 714
LweI GCATC 1 cut(s) 1553
MaeI CTAG 2 cut(s) 1349, 1716
MaeIII GTNAC 3 cut(s) 82, 430, 2267
MalI GATC 8 cut(s) 149, 336, 497, 788, 798, 1125, 1575, 2135
MbiI CCGCTC 1 cut(s) 636
MboI GATC 8 cut(s) 147, 334, 495, 786, 796, 1123, 1573, 2133
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 4 cut(s) 147, 334, 495, 2133
MhlI GDGCHC 3 cut(s) 165, 513, 1800
MlsI TGGCCA 2 cut(s) 143, 491
MluNI TGGCCA 2 cut(s) 143, 491
MlyI GAGTC 6 cut(s) 79, 94, 427, 691, 697, 701
MmeI TCCRAC 2 cut(s) 713, 2264
Mox20I TGGCCA 2 cut(s) 143, 491
Mph1103I ATGCAT 1 cut(s) 2079
MroXI GAANNNNTTC 1 cut(s) 1863
MscI TGGCCA 2 cut(s) 143, 491
MseI TTAA 6 cut(s) 1047, 1401, 1584, 1998, 2087, 2145
Msp20I TGGCCA 2 cut(s) 143, 491
MspR9I CCNGG 6 cut(s) 38, 239, 331, 386, 587, 1560
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 2 cut(s) 1779, 1863
MvaI CCWGG 6 cut(s) 38, 239, 331, 386, 587, 1560
MwoI GCNNNNNNNGC 7 cut(s) 234, 243, 582, 615, 1278, 1521, 1785
NcoI CCATGG 2 cut(s) 1850, 2191
NdeI CATATG 1 cut(s) 2323
NdeII GATC 8 cut(s) 147, 334, 495, 786, 796, 1123, 1573, 2133
NlaIII CATG 9 cut(s) 922, 1130, 1652, 1804, 1854, 1978, 2015, 2110, 2195
NlaIV GGNNCC 4 cut(s) 192, 540, 1965, 2135
NmeAIII GCCGAG 1 cut(s) 1261
NmuCI GTSAC 3 cut(s) 82, 430, 2267
NsiI ATGCAT 1 cut(s) 2079
NspI RCATGY 1 cut(s) 2110
NspV TTCGAA 1 cut(s) 1826
PagI TCATGA 1 cut(s) 918
PasI CCCWGGG 1 cut(s) 330
PctI GAATGC 2 cut(s) 1779, 1863
PdmI GAANNNNTTC 1 cut(s) 1863
PfeI GAWTC 7 cut(s) 448, 844, 1315, 1372, 1600, 1654, 1823
PfoI TCCNGGA 1 cut(s) 1558
PkrI GCNGC 7 cut(s) 67, 415, 638, 662, 726, 729, 2157
PleI GAGTC 6 cut(s) 79, 94, 427, 691, 697, 700
PpsI GAGTC 6 cut(s) 79, 94, 427, 691, 697, 700
PshBI ATTAAT 1 cut(s) 1401
Psp6I CCWGG 6 cut(s) 36, 237, 329, 384, 585, 1558
PspGI CCWGG 6 cut(s) 36, 237, 329, 384, 585, 1558
PspN4I GGNNCC 4 cut(s) 192, 540, 1965, 2135
PspPI GGNCC 2 cut(s) 190, 538
PstNI CAGNNNCTG 1 cut(s) 1554
PsuI RGATCY 4 cut(s) 147, 334, 495, 2133
SalI GTCGAC 2 cut(s) 694, 1093
SaqAI TTAA 6 cut(s) 1047, 1401, 1584, 1998, 2087, 2145
SatI GCNGC 7 cut(s) 66, 414, 637, 661, 725, 728, 2156
Sau3AI GATC 8 cut(s) 147, 334, 495, 786, 796, 1123, 1573, 2133
Sau96I GGNCC 2 cut(s) 190, 538
SchI GAGTC 6 cut(s) 79, 94, 427, 691, 697, 701
ScrFI CCNGG 6 cut(s) 38, 239, 331, 386, 587, 1560
SduI GDGCHC 3 cut(s) 165, 513, 1800
SfaNI GCATC 1 cut(s) 1553
SfuI TTCGAA 1 cut(s) 1826
SinI GGWCC 2 cut(s) 190, 538
SmlI CTYRAG 3 cut(s) 318, 2222, 2299
SmoI CTYRAG 3 cut(s) 318, 2222, 2299
SsiI CCGC 7 cut(s) 636, 639, 660, 724, 1594, 1812, 2156
SspMI CTAG 2 cut(s) 1349, 1716
StyD4I CCNGG 6 cut(s) 36, 237, 329, 384, 585, 1558
StyI CCWWGG 5 cut(s) 194, 542, 1255, 1850, 2191
TaaI ACNGT 3 cut(s) 315, 977, 2373
TauI GCSGC 4 cut(s) 639, 663, 727, 2158
TfiI GAWTC 7 cut(s) 448, 844, 1315, 1372, 1600, 1654, 1823
Tru1I TTAA 6 cut(s) 1047, 1401, 1584, 1998, 2087, 2145
Tru9I TTAA 6 cut(s) 1047, 1401, 1584, 1998, 2087, 2145
TscAI CASTG 4 cut(s) 1035, 1087, 2170, 2376
TseFI GTSAC 3 cut(s) 82, 430, 2267
TseI GCWGC 3 cut(s) 65, 413, 727
Tsp45I GTSAC 3 cut(s) 82, 430, 2267
TspRI CASTG 4 cut(s) 1035, 1087, 2170, 2376
VpaK11BI GGWCC 2 cut(s) 190, 538
VspI ATTAAT 1 cut(s) 1401
XapI RAATTY 4 cut(s) 598, 1427, 1741, 2081
XceI RCATGY 1 cut(s) 2110
XcmI CCANNNNNNNNNTGG 1 cut(s) 2044
XmiI GTMKAC 2 cut(s) 695, 1094
XmnI GAANNNNTTC 1 cut(s) 1863
XspI CTAG 2 cut(s) 1349, 1716
Zsp2I ATGCAT 1 cut(s) 2079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.