Rh7DG290000

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000280
Physical Location & Seq
Forward (+)
32528571 .. 32541138
12568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG290000.1

Sequence Viewer

Length: 3057 bp
ATGGCGAGAGGGGGAGGCAGAGGAAGAGGGAGATGGGCAAAGCGGCAAACCCATAACCCAAATCAAACTGAAGATGTTGCTGTCAAAGTTGGTGAAGATGGTGATGGGGTTGTTCTTTCTGAGATAAAGGCTGTGTCTTTTGGTGGTGTAGAGAAGGGTGAGGACAGTTTGGGAAACGATCAGAAGGAAGAAGTTGCTGTGAGTGTGAAGAAGAAGAAGAAGCCTGGGAGGAAGAGTAAGAAGGGTTTGGTGGGAAATGGTGATGGAGGTCTAAAGGAGGTTGCTTTTGGTGCTGATGAGATTTCTATGATGACTTTGAGGAAGAGGCCTGAACGGAACAAGAGAGTTAGAGTTATGGAGGCAGAGGGAAATGGTGAGAAAGGTAAAGAGAATGGTGCTTCTGTGAACAAGAAGGGTAGGAAAAAGGTGACATTTGCGAAGGAAGGGGGAAAGAAAGGTGTTTTAGAAGTGGATAATGACAAGAAGCGTGATAGGAAGCGTGTGAAAACTGAGGAGGAAGATGGGAATGAGGTAGGCTATTCGTTTAGGCCTCTGAGGGAGCAGGGACATCTATCAACGGAGGAGCGTAAAAAGTGGATTGAGGAGGTATCCCTAATGTGCCACCAATGTCAGAGGAATGATAAGGGAAGGGTTGTTCGGTGCAAAAAGTGCAGGACAAAGCGATATTGTGTTCCTTGCATAGAGAATTGGTATCCACATACATCAGAGGATGCCATTGCTGAGGCTTGTCCTGTATGCCGTGGAAATTGCAATTGCAAAGCATGCTTGCGCTTAGATATACCAGTTAAAAATCTGAAGAACCAAGATTTAGTACTTGACAACGATGCAAGAGTTGAGCACTCTAAGTACTTAATTCATGCACTGCTTCCATCCTTGAAAAGAATTCATGAAGAACAAGAGAATGAGAAGGCGATGGAGGCAAGGAGAAAAGGGTTATCTAACTTGAAGCTCCAGATACCAAAGTCTGACTGTGCTGCTGATGTTCGCGTGTATTGCAACAACTGCAGAACTTCTATTTTTGATTATCACAGAAGCTGTCCTAAATGTTCATATGACCTCTGCCTCATTTGTTGCCGGGAGATTCGAGAAGGACAATTGCAGCTAGGTAGGGAGGAAGTGACTTTGGAGTGTGTTTCTCGGGGCTTACCTTATTTGCATGGTGGAGAGGAAGAGGACAACAAAAAAAGAAAGGGAAAGAGAAATAGGAATGTTGTGGAGCCACCCTCTGAAACTAGTCCCAAAAGTTCTGGAAAGCGAACATTTGAGTGGAAATCATATGAAGATGGAAGCATAATTTGCCCCCCAGAGGACATGGGAGGTTGTGGCAGTGGTAATCTAGAATTGAGATGCATGTTTTCCAAAAATTACGTCAAAGAGTTGGTAAAGAAAGCAGAAGAGATAGATGAAGCTTACAAACTTGTGTATTCAAGTAGAACTTCTGCAGAGAGGTGTTCATGTCTCAACTCTGTCGATGATGTCAATTCAAGCATCAATGCATCAAGGAAAGCAGCTTCACGAGACAATTCTGAGGACAACTATCTGTACTGTGCAAGGGCTGGAGATATCCAAGTAGAGGATTTAAAGCATTTCCAGTGGCATTGGATCAAGGGTGAGCCTGTTATTGTTAGCAATGCACTTGAAACTGCATCAGGTTTAAGCTGGGAACCATTGGTCATGTGGCGCGCTTGTCGTCAGATGCAACATACTAAGCATGGTAAACATTTGGATGTCAAAGCAATAGATTGCCTGGATTGGTGTGAGGGGGATATCAATATCCACCAATTTTTTACTGGATACTCGAAGGGACGGTTTGATCGAGAGAATTGGCCACAGATATTGAAACTGAAAGATTGGCCGCCAACTAATTTATTTGAGGAGCGCCTTCCTCGTCATGGTGCTGAGTTCATTTGTTGTCTGCCGTATAAGGAATATACTCATCCTCGCAATGGTCCTCTAAACCTTTTTGCCAAATTACCTTCAGAATGTGTAAAACCAGACATGGGACCAAAGACATATATTGCTTATGGTTTTTCCCAGGAGCTTGGACGTGGAGATTCTGTAACCAAGCTTCATTGCGATATGTCAGATGCGGTGAATGTTTTGACACATACCACTGAAGTGAACCTTACTCCTGAGCAACTTACTGTCATTGAAAAGTTGAAAAAGAAGCATGCTCAACAAGACCAAAGAGAAATTTTTGGCAATTGTCAGACTGTGGATGATGATGTTGATAGTGGCAAGGCTGCTGGTGATTCTTGTTTCAGTGCTGCTAATGATAAACAACTTCTTAATGAAGTTGATAATAATAGCAGTGGTGTAGCTGTTCCAGAACTGGTTGATCCAATTGTTCAACATGTTGGAGATGCTTCAACGGGATCTGTGTCCGAAAAGAATAAAGAGGCAGAATTAGATCATGATATCGGTGGTGAAATGCCTGCAAGAATTTATGGAAATAAGTTGGAAGAGTCGGATGTCAATGAGGGAGGTGCTTTATGGGACATATTTCGTAGACAGGATGTTCCTAAGCTGCAGGAGTATCTCATGAAGCATTTCAAGGAATTCAGGCACGTACACTGTTGTCCATTGCAGCAGGTTATTCATCCCATACATGATCAGACATTTTATCTTACAATGGAGCACAAAAAGAAGCTTAAAGAGGAATATGGAATTGAACCATGGACCTTCATTCAAAACCTTGGAGATGCTGTCTTTATTCCTGCAGGATGTCCGCATCAAGTCAGGAACTTGAAGTCATGCATCAAAGTTGCAATGGACTTTGTCTCACCTGAAAATGTTGGCGAGTGCTTTCACTTGACAGAAGTATTCCGCACACTTCCAGAAGATCACAGGGCTAAAGAGGACAAATTGGAGGATTTATGGCTACAATCCACCCCCAAAGCCATCGATGCTAATCCTTTAGCTTCAGACACAGCAGGTGGTGCCACTATAGCCCGACGAGGAGGGGGTGCAATTGTTGACGATGCAGTGAGCAGAACCTACCCAACTGCACAACTAACTCTTGGGTCGAGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

1018

Amino Acids

114.7

Weight (kDa)

7.45

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 204 - 264 7.7e-07 Zinc-finger domain of monoamine-oxidase A repressor R1
JmjC PF02373 835 - 933 6.1e-15 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2945
Acc36I ACCTGC 2 cut(s) 2602, 2945
AccB1I GGYRCC 1 cut(s) 2960
AccI GTMKAC 1 cut(s) 2530
AccII CGCG 2 cut(s) 1008, 1704
AciI CCGC 5 cut(s) 43, 1877, 2111, 2750, 2848
AclWI GGATC 3 cut(s) 1631, 2354, 2404
AcoI YGGCCR 2 cut(s) 1847, 1874
AcsI RAATTY 4 cut(s) 903, 2214, 2463, 2579
AcuI CTGAAG 5 cut(s) 90, 836, 1983, 2157, 2928
AfaI GTAC 4 cut(s) 834, 869, 1565, 2592
AfiI CCNNNNNNNGG 5 cut(s) 1327, 1594, 1913, 1967, 2021
AflIII ACRYGT 1 cut(s) 2374
AhlI ACTAGT 1 cut(s) 1253
AjiI CACGTC 1 cut(s) 2069
AjnI CCWGG 3 cut(s) 223, 1767, 2055
AleI CACNNNNGTG 1 cut(s) 2138
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
Alw21I GWGCWC 2 cut(s) 861, 2661
Alw26I GTCTC 3 cut(s) 1484, 1533, 2806
AlwI GGATC 3 cut(s) 1631, 2354, 2404
AlwNI CAGNNNCTG 1 cut(s) 1056
Ama87I CYCGRG 1 cut(s) 1158
AoxI GGCC 4 cut(s) 326, 548, 1847, 1874
ApeKI GCWGC 7 cut(s) 995, 1120, 1529, 2264, 2288, 2548, 2608
ApoI RAATTY 4 cut(s) 903, 2214, 2463, 2579
ArsI GACNNNNNNTTYG 2 cut(s) 1374, 1406
Asp700I GAANNNNTTC 1 cut(s) 2570
AspLEI GCGC 4 cut(s) 792, 1704, 1706, 1902
AspS9I GGNCC 3 cut(s) 1970, 2024, 2700
AsuC2I CCSGG 1 cut(s) 1097
AvaI CYCGRG 1 cut(s) 1158
AvaII GGWCC 3 cut(s) 1970, 2024, 2700
BaeI ACNNNNGTAYC 2 cut(s) 968, 1001
BalI TGGCCA 1 cut(s) 1849
BanI GGYRCC 1 cut(s) 2960
BarI GAAGNNNNNNTAC 2 cut(s) 2073, 2105
BauI CACGAG 1 cut(s) 1536
Bbv12I GWGCWC 2 cut(s) 861, 2661
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 7 cut(s) 982, 1132, 1541, 2251, 2275, 2535, 2620
BccI CCATC 9 cut(s) 27, 92, 98, 257, 515, 898, 928, 1298, 2930
BceAI ACGGC 2 cut(s) 744, 1924
BciT130I CCWGG 3 cut(s) 225, 1769, 2057
BciVI GTATCC 3 cut(s) 619, 723, 1808
BclI TGATCA 1 cut(s) 2632
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 3 cut(s) 1484, 1533, 2806
BcuI ACTAGT 1 cut(s) 1253
BfaI CTAG 4 cut(s) 1124, 1254, 1358, 3055
BfmI CTRYAG 5 cut(s) 1024, 1461, 2549, 2739, 2967
BfoI RGCGCY 1 cut(s) 1903
BfuAI ACCTGC 2 cut(s) 2602, 2945
BfuI GTATCC 3 cut(s) 619, 723, 1808
BisI GCNGC 9 cut(s) 44, 996, 1121, 1530, 1877, 2265, 2289, 2549, 2609
BlsI GCNGC 9 cut(s) 45, 997, 1122, 1531, 1878, 2266, 2290, 2550, 2610
BmcAI AGTACT 2 cut(s) 834, 869
Bme1390I CCNGG 4 cut(s) 225, 1097, 1769, 2057
Bme18I GGWCC 3 cut(s) 1970, 2024, 2700
BmeT110I CYCGRG 1 cut(s) 1158
BmgBI CACGTC 1 cut(s) 2069
BmgT120I GGNCC 3 cut(s) 1970, 2024, 2700
BmiI GGNNCC 4 cut(s) 1239, 1686, 2025, 2962
BmrFI CCNGG 4 cut(s) 225, 1097, 1769, 2057
BplI GAGNNNNNCTC 2 cut(s) 1229, 1261
BpmI CTGGAG 2 cut(s) 956, 1599
Bpu10I CCTNAGC 3 cut(s) 741, 2154, 2544
BpuMI CCSGG 1 cut(s) 1097
Bsa29I ATCGAT 1 cut(s) 2925
BsaAI YACGTR 1 cut(s) 2590
BsaBI GATNNNNATC 1 cut(s) 2931
BsaJI CCNNGG 5 cut(s) 224, 760, 2055, 2696, 2716
BsaXI ACNNNNNCTCC 6 cut(s) 220, 250, 2064, 2094, 2712, 2742
Bsc4I CCNNNNNNNGG 5 cut(s) 1327, 1594, 1913, 1967, 2021
Bse1I ACTGG 4 cut(s) 803, 1612, 1816, 2358
Bse3DI GCAATG 6 cut(s) 735, 1657, 1972, 2092, 2603, 2796
Bse8I GATNNNNATC 1 cut(s) 2931
BseBI CCWGG 3 cut(s) 225, 1769, 2057
BseCI ATCGAT 1 cut(s) 2925
BseDI CCNNGG 5 cut(s) 224, 760, 2055, 2696, 2716
BseGI GGATG 9 cut(s) 736, 890, 1753, 1957, 2245, 2497, 2542, 2620, 2750
BseJI GATNNNNATC 1 cut(s) 2931
BseLI CCNNNNNNNGG 5 cut(s) 1327, 1594, 1913, 1967, 2021
BseMI GCAATG 6 cut(s) 735, 1657, 1972, 2092, 2603, 2796
BseMII CTCAG 7 cut(s) 111, 501, 545, 732, 1539, 1911, 2145
BseNI ACTGG 4 cut(s) 803, 1612, 1816, 2358
BsePI GCGCGC 1 cut(s) 1702
BseRI GAGGAG 5 cut(s) 527, 596, 617, 1910, 2994
BseXI GCAGC 7 cut(s) 982, 1132, 1541, 2251, 2275, 2535, 2620
BseYI CCCAGC 1 cut(s) 1680
BsgI GTGCAG 2 cut(s) 691, 3012
Bsh1236I CGCG 2 cut(s) 1008, 1704
BshFI GGCC 4 cut(s) 328, 550, 1849, 1876
BshNI GGYRCC 1 cut(s) 2960
BshVI ATCGAT 1 cut(s) 2925
BsiHKAI GWGCWC 2 cut(s) 861, 2661
BsiHKCI CYCGRG 1 cut(s) 1158
BsiSI CCGG 1 cut(s) 1096
BslFI GGGAC 5 cut(s) 579, 1242, 1839, 2037, 2531
BslI CCNNNNNNNGG 5 cut(s) 1327, 1594, 1913, 1967, 2021
BsmAI GTCTC 3 cut(s) 1484, 1533, 2806
BsmFI GGGAC 5 cut(s) 579, 1242, 1839, 2037, 2531
BsnI GGCC 4 cut(s) 328, 550, 1849, 1876
BsoBI CYCGRG 1 cut(s) 1158
Bsp1286I GDGCHC 2 cut(s) 861, 2661
Bsp143I GATC 8 cut(s) 178, 1623, 1834, 2359, 2396, 2431, 2632, 2863
Bsp19I CCATGG 1 cut(s) 2696
BspACI CCGC 5 cut(s) 43, 1877, 2111, 2750, 2848
BspANI GGCC 4 cut(s) 328, 550, 1849, 1876
BspCNI CTCAG 7 cut(s) 112, 502, 546, 733, 1540, 1912, 2146
BspDI ATCGAT 1 cut(s) 2925
BspFNI CGCG 2 cut(s) 1008, 1704
BspHI TCATGA 3 cut(s) 907, 2434, 2562
BspLI GGNNCC 4 cut(s) 1239, 1686, 2025, 2962
BspMAI CTGCAG 4 cut(s) 1028, 1465, 2553, 2743
BspMI ACCTGC 2 cut(s) 2602, 2945
BspPI GGATC 3 cut(s) 1631, 2354, 2404
BspT107I GGYRCC 1 cut(s) 2960
BsrDI GCAATG 6 cut(s) 735, 1657, 1972, 2092, 2603, 2796
BsrI ACTGG 4 cut(s) 803, 1612, 1816, 2358
BssECI CCNNGG 5 cut(s) 224, 760, 2055, 2696, 2716
BssHII GCGCGC 1 cut(s) 1702
BssMI GATC 8 cut(s) 178, 1623, 1834, 2359, 2396, 2431, 2632, 2863
BssSI CACGAG 1 cut(s) 1536
BssT1I CCWWGG 2 cut(s) 2696, 2716
Bst2BI CACGAG 1 cut(s) 1536
Bst2UI CCWGG 3 cut(s) 225, 1769, 2057
Bst4CI ACNGT 7 cut(s) 167, 992, 1568, 1830, 2167, 2236, 2597
Bst6I CTCTTC 6 cut(s) 19, 227, 317, 1185, 1410, 2478
BstAPI GCANNNNNTGC 5 cut(s) 669, 783, 1023, 1317, 2960
BstBAI YACGTR 1 cut(s) 2590
BstC8I GCNNGC 5 cut(s) 784, 788, 1704, 2193, 2457
BstDSI CCRYGG 2 cut(s) 760, 2696
BstF5I GGATG 9 cut(s) 736, 890, 1753, 1957, 2245, 2497, 2542, 2620, 2750
BstFNI CGCG 2 cut(s) 1008, 1704
BstH2I RGCGCY 1 cut(s) 1903
BstHHI GCGC 4 cut(s) 792, 1704, 1706, 1902
BstKTI GATC 8 cut(s) 181, 1626, 1837, 2362, 2399, 2434, 2635, 2866
BstMAI GTCTC 3 cut(s) 1484, 1533, 2806
BstMBI GATC 8 cut(s) 178, 1623, 1834, 2359, 2396, 2431, 2632, 2863
BstNI CCWGG 3 cut(s) 225, 1769, 2057
BstNSI RCATGY 4 cut(s) 786, 1375, 2195, 2378
BstSCI CCNGG 4 cut(s) 223, 1095, 1767, 2055
BstSFI CTRYAG 5 cut(s) 1024, 1461, 2549, 2739, 2967
BstUI CGCG 2 cut(s) 1008, 1704
BstV1I GCAGC 7 cut(s) 982, 1132, 1541, 2251, 2275, 2535, 2620
BstX2I RGATCY 1 cut(s) 2396
BstXI CCANNNNNNTGG 1 cut(s) 2063
BstYI RGATCY 1 cut(s) 2396
Bsu15I ATCGAT 1 cut(s) 2925
BsuI GTATCC 3 cut(s) 619, 723, 1808
BsuRI GGCC 4 cut(s) 328, 550, 1849, 1876
BsuTUI ATCGAT 1 cut(s) 2925
BtgI CCRYGG 2 cut(s) 760, 2696
BtgZI GCGATG 1 cut(s) 947
BtrI CACGTC 1 cut(s) 2069
BtsCI GGATG 9 cut(s) 736, 890, 1753, 1957, 2245, 2497, 2542, 2620, 2750
BtsI GCAGTG 4 cut(s) 881, 1354, 2338, 3012
BtsIMutI CAGTG 8 cut(s) 881, 1354, 1619, 2133, 2290, 2338, 2593, 3012
BveI ACCTGC 2 cut(s) 2602, 2945
Cac8I GCNNGC 5 cut(s) 784, 788, 1704, 2193, 2457
CaiI CAGNNNCTG 1 cut(s) 1056
CciI TCATGA 3 cut(s) 907, 2434, 2562
CfoI GCGC 4 cut(s) 792, 1704, 1706, 1902
Cfr13I GGNCC 3 cut(s) 1970, 2024, 2700
ClaI ATCGAT 1 cut(s) 2925
Csp6I GTAC 4 cut(s) 833, 868, 1564, 2591
CspCI CAANNNNNGTGG 2 cut(s) 1839, 1874
CviQI GTAC 4 cut(s) 833, 868, 1564, 2591
DpnI GATC 8 cut(s) 180, 1625, 1836, 2361, 2398, 2433, 2634, 2865
DpnII GATC 8 cut(s) 178, 1623, 1834, 2359, 2396, 2431, 2632, 2863
DraI TTTAAA 1 cut(s) 1602
EaeI YGGCCR 2 cut(s) 1847, 1874
Eam1104I CTCTTC 6 cut(s) 19, 227, 317, 1185, 1410, 2478
EarI CTCTTC 6 cut(s) 19, 227, 317, 1185, 1410, 2478
Eco130I CCWWGG 2 cut(s) 2696, 2716
Eco147I AGGCCT 2 cut(s) 328, 550
Eco32I GATATC 3 cut(s) 1585, 1789, 2440
Eco47I GGWCC 3 cut(s) 1970, 2024, 2700
Eco57I CTGAAG 5 cut(s) 90, 836, 1983, 2157, 2928
Eco88I CYCGRG 1 cut(s) 1158
EcoRI GAATTC 2 cut(s) 903, 2579
EcoRII CCWGG 3 cut(s) 223, 1767, 2055
EcoRV GATATC 3 cut(s) 1585, 1789, 2440
EcoT14I CCWWGG 2 cut(s) 2696, 2716
EcoT22I ATGCAT 3 cut(s) 1373, 1519, 2780
ErhI CCWWGG 2 cut(s) 2696, 2716
FalI AAGNNNNNCTT 4 cut(s) 1441, 1473, 2130, 2162
FaqI GGGAC 5 cut(s) 579, 1242, 1839, 2037, 2531
FauNDI CATATG 2 cut(s) 1072, 1297
FbaI TGATCA 1 cut(s) 2632
FblI GTMKAC 1 cut(s) 2530
Fnu4HI GCNGC 9 cut(s) 44, 996, 1121, 1530, 1877, 2265, 2289, 2549, 2609
FokI GGATG 9 cut(s) 743, 877, 1760, 1944, 2252, 2504, 2549, 2607, 2757
Fsp4HI GCNGC 9 cut(s) 44, 996, 1121, 1530, 1877, 2265, 2289, 2549, 2609
FspBI CTAG 4 cut(s) 1124, 1254, 1358, 3055
GlaI GCGC 4 cut(s) 791, 1703, 1705, 1901
GluI GCNGC 9 cut(s) 44, 996, 1121, 1530, 1877, 2265, 2289, 2549, 2609
GsaI CCCAGC 1 cut(s) 1684
GsuI CTGGAG 2 cut(s) 956, 1599
HaeII RGCGCY 1 cut(s) 1903
HaeIII GGCC 4 cut(s) 328, 550, 1849, 1876
HapII CCGG 1 cut(s) 1096
HhaI GCGC 4 cut(s) 792, 1704, 1706, 1902
Hin6I GCGC 4 cut(s) 790, 1702, 1704, 1900
HinP1I GCGC 4 cut(s) 790, 1702, 1704, 1900
HincII GTYRAC 1 cut(s) 2998
HindII GTYRAC 1 cut(s) 2998
HindIII AAGCTT 3 cut(s) 1428, 2087, 2669
HinfI GANTC 5 cut(s) 1102, 2075, 2273, 2486, 3051
HpaII CCGG 1 cut(s) 1096
Hpy166II GTNNAC 6 cut(s) 406, 1739, 2143, 2531, 2593, 2998
Hpy8I GTNNAC 6 cut(s) 406, 1739, 2143, 2531, 2593, 2998
Hpy99I CGWCG 1 cut(s) 2979
HpyCH4III ACNGT 7 cut(s) 167, 992, 1568, 1830, 2167, 2236, 2597
HpyCH4IV ACGT 3 cut(s) 1389, 2068, 2589
HpySE526I ACGT 3 cut(s) 1389, 2068, 2589
HspAI GCGC 4 cut(s) 790, 1702, 1704, 1900
Ksp22I TGATCA 1 cut(s) 2632
Kzo9I GATC 8 cut(s) 178, 1623, 1834, 2359, 2396, 2431, 2632, 2863
LmnI GCTCC 7 cut(s) 559, 583, 975, 1237, 1897, 2059, 2656
Lsp1109I GCAGC 7 cut(s) 982, 1132, 1541, 2251, 2275, 2535, 2620
MaeI CTAG 4 cut(s) 1124, 1254, 1358, 3055
MaeII ACGT 3 cut(s) 1389, 2068, 2589
MaeIII GTNAC 3 cut(s) 427, 1138, 2080
MalI GATC 8 cut(s) 180, 1625, 1836, 2361, 2398, 2433, 2634, 2865
MboI GATC 8 cut(s) 178, 1623, 1834, 2359, 2396, 2431, 2632, 2863
MfeI CAATTG 5 cut(s) 772, 1115, 2224, 2364, 2991
MflI RGATCY 1 cut(s) 2396
MhlI GDGCHC 2 cut(s) 861, 2661
MlsI TGGCCA 1 cut(s) 1849
MluNI TGGCCA 1 cut(s) 1849
MlyI GAGTC 1 cut(s) 2495
MmeI TCCRAC 3 cut(s) 2359, 2460, 2469
Mox20I TGGCCA 1 cut(s) 1849
Mph1103I ATGCAT 3 cut(s) 1373, 1519, 2780
MroXI GAANNNNTTC 1 cut(s) 2570
MscI TGGCCA 1 cut(s) 1849
MseI TTAA 6 cut(s) 807, 872, 1601, 1676, 2310, 2673
MslI CAYNNNNRTG 3 cut(s) 1285, 1746, 2138
Msp20I TGGCCA 1 cut(s) 1849
MspI CCGG 1 cut(s) 1096
MspR9I CCNGG 4 cut(s) 225, 1097, 1769, 2057
MunI CAATTG 5 cut(s) 772, 1115, 2224, 2364, 2991
MvaI CCWGG 3 cut(s) 225, 1769, 2057
MvnI CGCG 2 cut(s) 1008, 1704
NciI CCSGG 1 cut(s) 1097
NcoI CCATGG 1 cut(s) 2696
NdeI CATATG 2 cut(s) 1072, 1297
NdeII GATC 8 cut(s) 178, 1623, 1834, 2359, 2396, 2431, 2632, 2863
NlaIV GGNNCC 4 cut(s) 1239, 1686, 2025, 2962
NmuCI GTSAC 2 cut(s) 427, 1138
NsiI ATGCAT 3 cut(s) 1373, 1519, 2780
NspI RCATGY 4 cut(s) 786, 1375, 2195, 2378
OliI CACNNNNGTG 1 cut(s) 2138
PaeI GCATGC 2 cut(s) 786, 2195
PagI TCATGA 3 cut(s) 907, 2434, 2562
PaqCI CACCTGC 1 cut(s) 2945
PauI GCGCGC 1 cut(s) 1702
PceI AGGCCT 2 cut(s) 328, 550
PciI ACATGT 1 cut(s) 2374
PcsI WCGNNNNNNNCGW 1 cut(s) 1834
PdmI GAANNNNTTC 1 cut(s) 2570
PfeI GAWTC 4 cut(s) 1102, 2075, 2273, 3051
PflFI GACNNNGTC 1 cut(s) 2798
PkrI GCNGC 9 cut(s) 45, 997, 1122, 1531, 1878, 2266, 2290, 2550, 2610
PleI GAGTC 1 cut(s) 2494
PpsI GAGTC 1 cut(s) 2494
Ppu21I YACGTR 1 cut(s) 2590
PscI ACATGT 1 cut(s) 2374
Psp6I CCWGG 3 cut(s) 223, 1767, 2055
PspFI CCCAGC 1 cut(s) 1680
PspGI CCWGG 3 cut(s) 223, 1767, 2055
PspN4I GGNNCC 4 cut(s) 1239, 1686, 2025, 2962
PspPI GGNCC 3 cut(s) 1970, 2024, 2700
PstI CTGCAG 4 cut(s) 1028, 1465, 2553, 2743
PstNI CAGNNNCTG 1 cut(s) 1056
PsuI RGATCY 1 cut(s) 2396
PsyI GACNNNGTC 1 cut(s) 2798
PteI GCGCGC 1 cut(s) 1702
RsaI GTAC 4 cut(s) 834, 869, 1565, 2592
RsaNI GTAC 4 cut(s) 833, 868, 1564, 2591
RseI CAYNNNNRTG 3 cut(s) 1285, 1746, 2138
SaqAI TTAA 6 cut(s) 807, 872, 1601, 1676, 2310, 2673
SatI GCNGC 9 cut(s) 44, 996, 1121, 1530, 1877, 2265, 2289, 2549, 2609
Sau3AI GATC 8 cut(s) 178, 1623, 1834, 2359, 2396, 2431, 2632, 2863
Sau96I GGNCC 3 cut(s) 1970, 2024, 2700
SbfI CCTGCAGG 1 cut(s) 2743
ScaI AGTACT 2 cut(s) 834, 869
SchI GAGTC 1 cut(s) 2495
ScrFI CCNGG 4 cut(s) 225, 1097, 1769, 2057
SdaI CCTGCAGG 1 cut(s) 2743
SduI GDGCHC 2 cut(s) 861, 2661
SfcI CTRYAG 5 cut(s) 1024, 1461, 2549, 2739, 2967
SinI GGWCC 3 cut(s) 1970, 2024, 2700
SmiMI CAYNNNNRTG 3 cut(s) 1285, 1746, 2138
SpeI ACTAGT 1 cut(s) 1253
SphI GCATGC 2 cut(s) 786, 2195
Sse8387I CCTGCAGG 1 cut(s) 2743
SseBI AGGCCT 2 cut(s) 328, 550
SsiI CCGC 5 cut(s) 43, 1877, 2111, 2750, 2848
SspMI CTAG 4 cut(s) 1124, 1254, 1358, 3055
StuI AGGCCT 2 cut(s) 328, 550
StyD4I CCNGG 4 cut(s) 223, 1095, 1767, 2055
StyI CCWWGG 2 cut(s) 2696, 2716
TaaI ACNGT 7 cut(s) 167, 992, 1568, 1830, 2167, 2236, 2597
TaiI ACGT 3 cut(s) 1392, 2071, 2592
TaqI TCGA 6 cut(s) 1105, 1491, 1820, 1837, 2925, 3047
TatI WGTACW 3 cut(s) 832, 867, 1563
TauI GCSGC 2 cut(s) 46, 1879
TfiI GAWTC 4 cut(s) 1102, 2075, 2273, 3051
Tru1I TTAA 6 cut(s) 807, 872, 1601, 1676, 2310, 2673
Tru9I TTAA 6 cut(s) 807, 872, 1601, 1676, 2310, 2673
TscAI CASTG 8 cut(s) 888, 1354, 1619, 2140, 2290, 2338, 2600, 3012
TseFI GTSAC 2 cut(s) 427, 1138
TseI GCWGC 7 cut(s) 995, 1120, 1529, 2264, 2288, 2548, 2608
Tsp45I GTSAC 2 cut(s) 427, 1138
TspGWI ACGGA 2 cut(s) 349, 593
TspRI CASTG 8 cut(s) 888, 1354, 1619, 2140, 2290, 2338, 2600, 3012
Tth111I GACNNNGTC 1 cut(s) 2798
VpaK11BI GGWCC 3 cut(s) 1970, 2024, 2700
XapI RAATTY 4 cut(s) 903, 2214, 2463, 2579
XbaI TCTAGA 1 cut(s) 1357
XceI RCATGY 4 cut(s) 786, 1375, 2195, 2378
XcmI CCANNNNNNNNNTGG 2 cut(s) 1695, 1808
XmiI GTMKAC 1 cut(s) 2530
XmnI GAANNNNTTC 1 cut(s) 2570
XspI CTAG 4 cut(s) 1124, 1254, 1358, 3055
ZrmI AGTACT 2 cut(s) 834, 869
Zsp2I ATGCAT 3 cut(s) 1373, 1519, 2780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.