Rh1DG195900

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000280
Physical Location & Seq
Reverse (-)
38680352 .. 38684376
4025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG195900.1

Sequence Viewer

Length: 1344 bp
ATGGGGCCTCAAAGGCTAAAACTGAGAGATTGTGCTCCAGCTAGTTTGATTGAGGAGCACCTTCCTCATCATGGTGCTGAGTTTATCTATGGCTTGCCATTTAAGGAATATACTCATCCTCACAGTGGGTTTCTTAATCTTGCTGCTAAATTCCCTGAGGAGTGTGGGAAGCCTGCTTATGGCGTTGGGCAGGAGCTTGGACATGAAGATTCTGTGACTAAGCTTCATTGCAATATATCTGATGTGGTGAATGTTTTGACACATACTGCTGAAGTGACCCCAAATTCTCAACAACTTCTTACAGTAGAAAGGCTGAAAAATGCGCAGATTGAGCAAGATAGAAGAGAAACTTTAGGAGACTGTCACTCAGCGGATGGCAATGTTGATGGTAAAATGGCCAGCGTTGGGTCGTATCTTAAACAATTTTATATTCAAGGTGGCAATCAAATCAGGGATGCTGCTTTCGAAAAACTAACACTACCAACTGTTCAATCTGACTGTGATACTGGTAATTCTTGTTTGAAAGGTGGAAATCTTTCAAACTATTCCAGATCTGAAAATAATGTAGACGGTGGTGCTTTATGGGACATTTTTCGGAGACAGGATGTTCCAAAACTACAGGAATATCTCAGGAAGCACTTCAACGAGTTTAGGCACACATACTGCTGTCCGTCCCAACAGATTAGTCATCCCATTCACGATCAGAACTTTTACCTGACTCGGGAGCACAAAAGGAAGCTGAAAGAGGAATGTGGAATCGAACCATGGACATGTATCCAGAAACTTGGGGATGCTATCTTTGTTCCTGCAGGCTGTCCATATCAAGTCAGAAACTTGAAGTCATGCATTAAAGTTGCAGTTCAATTTGTCTCACCTGAAAGTGTTGGCGACTGCTTTCGTTTGACTGAAGAATGCCGCACACTTCCAAAAGATCACGGGGCTAAAGAGGATAAATTGGAGGTGAAAAAAATGATTGTGCATGCTATGTGGGAAGCTGTGGATATTTTGGATCAGAGTGTGAGGGTTAGACAAGCAAAGAGAGAGGAAGTTGGACAAAGACAGCAAGTACAGAGCAGGGAGGATGGGGAAGTTCAAGCTGATGAGGAGCAGCCATCAATGTCATCACATCCAGCACAGTTCCCTCTTGATCTTGTTACAGCAATGCAGCGGCTAGATGACCTTGTTGAGCGCTTTTCGGATTTTGAACACTTGGAAGAGAGAGATAGAATAATGAATCCGGAATACCAGTTCTTATGTTCAGAGTTCATGAATTTATCTTCACATCTTGGTTATGCAACTCGGGTGAAAGAGTCTGCCATTCCACCATCCTATCAGCAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

447

Amino Acids

50.9

Weight (kDa)

5.75

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 187 - 289 5.1e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
AccI GTMKAC 1 cut(s) 567
AccIII TCCGGA 1 cut(s) 1237
AciI CCGC 3 cut(s) 371, 916, 1168
AclWI GGATC 1 cut(s) 1017
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 3 cut(s) 149, 283, 1270
AcuI CTGAAG 2 cut(s) 291, 927
AfaI GTAC 1 cut(s) 1068
AfeI AGCGCT 1 cut(s) 1190
AfiI CCNNNNNNNGG 5 cut(s) 71, 125, 179, 405, 721
AflIII ACRYGT 1 cut(s) 770
AgsI TTSAA 9 cut(s) 434, 491, 523, 540, 643, 838, 863, 1094, 1205
AloI GAACNNNNNNTCC 2 cut(s) 1232, 1264
AluBI AGCT 6 cut(s) 41, 196, 223, 739, 995, 1097
AluI AGCT 6 cut(s) 41, 196, 223, 739, 995, 1097
Alw21I GWGCWC 3 cut(s) 37, 60, 729
Alw26I GTCTC 3 cut(s) 351, 592, 874
AlwI GGATC 1 cut(s) 1017
Ama87I CYCGRG 2 cut(s) 720, 1299
Aor13HI TCCGGA 1 cut(s) 1237
Aor51HI AGCGCT 1 cut(s) 1190
AoxI GGCC 2 cut(s) 5, 396
ApeKI GCWGC 4 cut(s) 143, 458, 1108, 1165
ApoI RAATTY 3 cut(s) 149, 283, 1270
Asp700I GAANNNNTTC 2 cut(s) 535, 638
AspLEI GCGC 2 cut(s) 325, 1191
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 4 cut(s) 259, 864, 973, 1315
AsuII TTCGAA 1 cut(s) 465
AvaI CYCGRG 2 cut(s) 720, 1299
AxyI CCTNAGG 1 cut(s) 156
BalI TGGCCA 1 cut(s) 398
Bbv12I GWGCWC 3 cut(s) 37, 60, 729
BbvI GCAGC 4 cut(s) 130, 445, 1120, 1177
BccI CCATC 5 cut(s) 368, 380, 1076, 1120, 1333
BciVI GTATCC 1 cut(s) 785
BcoDI GTCTC 3 cut(s) 351, 592, 874
BfaI CTAG 2 cut(s) 42, 1172
BfmI CTRYAG 2 cut(s) 617, 807
BfoI RGCGCY 1 cut(s) 1192
BfuI GTATCC 1 cut(s) 785
BglI GCCNNNNNGGC 1 cut(s) 13
BglII AGATCT 1 cut(s) 551
BisI GCNGC 6 cut(s) 144, 459, 916, 1109, 1166, 1169
BlsI GCNGC 6 cut(s) 145, 460, 917, 1110, 1167, 1170
BmeT110I CYCGRG 2 cut(s) 720, 1299
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 445, 781
BpmI CTGGAG 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 764
BsaWI WCCGGW 1 cut(s) 1237
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 125, 179, 405, 721
Bse1I ACTGG 2 cut(s) 511, 1246
Bse21I CCTNAGG 1 cut(s) 156
Bse3DI GCAATG 3 cut(s) 226, 385, 1167
BseAI TCCGGA 1 cut(s) 1237
BseDI CCNNGG 1 cut(s) 764
BseGI GGATG 9 cut(s) 115, 379, 460, 610, 688, 796, 1087, 1126, 1325
BseLI CCNNNNNNNGG 5 cut(s) 71, 125, 179, 405, 721
BseMI GCAATG 3 cut(s) 226, 385, 1167
BseMII CTCAG 5 cut(s) 14, 69, 147, 381, 643
BseNI ACTGG 2 cut(s) 511, 1246
BseRI GAGGAG 3 cut(s) 68, 173, 1118
BseXI GCAGC 4 cut(s) 130, 445, 1120, 1177
BshFI GGCC 2 cut(s) 7, 398
BsiHKAI GWGCWC 3 cut(s) 37, 60, 729
BsiHKCI CYCGRG 2 cut(s) 720, 1299
BsiSI CCGG 1 cut(s) 1238
BslFI GGGAC 2 cut(s) 599, 658
BslI CCNNNNNNNGG 5 cut(s) 71, 125, 179, 405, 721
BsmAI GTCTC 3 cut(s) 351, 592, 874
BsmFI GGGAC 2 cut(s) 599, 658
BsmI GAATGC 1 cut(s) 917
BsnI GGCC 2 cut(s) 7, 398
BsoBI CYCGRG 2 cut(s) 720, 1299
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 3 cut(s) 37, 60, 729
Bsp13I TCCGGA 1 cut(s) 1237
Bsp143I GATC 5 cut(s) 551, 700, 931, 1009, 1147
Bsp19I CCATGG 1 cut(s) 764
BspACI CCGC 3 cut(s) 371, 916, 1168
BspANI GGCC 2 cut(s) 7, 398
BspCNI CTCAG 5 cut(s) 15, 70, 148, 380, 642
BspEI TCCGGA 1 cut(s) 1237
BspHI TCATGA 1 cut(s) 1266
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 1 cut(s) 1017
BspT104I TTCGAA 1 cut(s) 465
BsrDI GCAATG 3 cut(s) 226, 385, 1167
BsrI ACTGG 2 cut(s) 511, 1246
BssECI CCNNGG 1 cut(s) 764
BssMI GATC 5 cut(s) 551, 700, 931, 1009, 1147
BssT1I CCWWGG 1 cut(s) 764
Bst4CI ACNGT 7 cut(s) 125, 304, 362, 487, 500, 572, 1137
Bst6I CTCTTC 2 cut(s) 337, 1209
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 5 cut(s) 95, 174, 400, 811, 981
BstDEI CTNAG 6 cut(s) 23, 78, 156, 219, 367, 629
BstDSI CCRYGG 1 cut(s) 764
BstF5I GGATG 9 cut(s) 115, 379, 460, 610, 688, 796, 1087, 1126, 1325
BstH2I RGCGCY 1 cut(s) 1192
BstHHI GCGC 2 cut(s) 325, 1191
BstKTI GATC 5 cut(s) 554, 703, 934, 1012, 1150
BstMAI GTCTC 3 cut(s) 351, 592, 874
BstMBI GATC 5 cut(s) 551, 700, 931, 1009, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 13, 331
BstNSI RCATGY 2 cut(s) 774, 983
BstSFI CTRYAG 2 cut(s) 617, 807
BstV1I GCAGC 4 cut(s) 130, 445, 1120, 1177
BstX2I RGATCY 1 cut(s) 551
BstXI CCANNNNNNTGG 1 cut(s) 785
BstYI RGATCY 1 cut(s) 551
Bsu36I CCTNAGG 1 cut(s) 156
BsuI GTATCC 1 cut(s) 785
BsuRI GGCC 2 cut(s) 7, 398
BtgI CCRYGG 1 cut(s) 764
BtsCI GGATG 9 cut(s) 115, 379, 460, 610, 688, 796, 1087, 1126, 1325
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 5 cut(s) 95, 174, 400, 811, 981
CciI TCATGA 1 cut(s) 1266
CfoI GCGC 2 cut(s) 325, 1191
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 1067
CviAII CATG 7 cut(s) 71, 203, 765, 771, 843, 980, 1267
CviQI GTAC 1 cut(s) 1067
DdeI CTNAG 6 cut(s) 23, 78, 156, 219, 367, 629
DpnI GATC 5 cut(s) 553, 702, 933, 1011, 1149
DpnII GATC 5 cut(s) 551, 700, 931, 1009, 1147
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 2 cut(s) 337, 1209
EarI CTCTTC 2 cut(s) 337, 1209
Eco130I CCWWGG 1 cut(s) 764
Eco47III AGCGCT 1 cut(s) 1190
Eco57I CTGAAG 2 cut(s) 291, 927
Eco81I CCTNAGG 1 cut(s) 156
Eco88I CYCGRG 2 cut(s) 720, 1299
EcoO109I RGGNCCY 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 764
EcoT22I ATGCAT 1 cut(s) 848
ErhI CCWWGG 1 cut(s) 764
FaeI CATG 7 cut(s) 74, 206, 768, 774, 846, 983, 1270
FalI AAGNNNNNCTT 2 cut(s) 334, 366
FaqI GGGAC 2 cut(s) 599, 658
FatI CATG 7 cut(s) 70, 202, 764, 770, 842, 979, 1266
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 6 cut(s) 144, 459, 916, 1109, 1166, 1169
FokI GGATG 9 cut(s) 102, 386, 467, 617, 675, 803, 1094, 1113, 1312
Fsp4HI GCNGC 6 cut(s) 144, 459, 916, 1109, 1166, 1169
FspBI CTAG 2 cut(s) 42, 1172
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 2 cut(s) 324, 1190
GluI GCNGC 6 cut(s) 144, 459, 916, 1109, 1166, 1169
GsuI CTGGAG 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 1192
HaeIII GGCC 2 cut(s) 7, 398
HapII CCGG 1 cut(s) 1238
HhaI GCGC 2 cut(s) 325, 1191
Hin1II CATG 7 cut(s) 74, 206, 768, 774, 846, 983, 1270
Hin6I GCGC 2 cut(s) 323, 1189
HinP1I GCGC 2 cut(s) 323, 1189
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 5 cut(s) 209, 718, 756, 1234, 1310
HpaII CCGG 1 cut(s) 1238
HphI GGTGA 4 cut(s) 259, 864, 973, 1315
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 9 cut(s) 241, 496, 556, 597, 705, 830, 1014, 1198, 1261
Hpy188III TCNNGA 8 cut(s) 549, 631, 698, 722, 778, 1145, 1238, 1267
Hpy8I GTNNAC 1 cut(s) 568
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 7 cut(s) 125, 304, 362, 487, 500, 572, 1137
HpyCH4V TGCA 7 cut(s) 231, 809, 846, 857, 979, 1165, 1295
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 331
HpyF3I CTNAG 6 cut(s) 23, 78, 156, 219, 367, 629
Hsp92II CATG 7 cut(s) 74, 206, 768, 774, 846, 983, 1270
HspAI GCGC 2 cut(s) 323, 1189
Kpn2I TCCGGA 1 cut(s) 1237
Kzo9I GATC 5 cut(s) 551, 700, 931, 1009, 1147
LmnI GCTCC 5 cut(s) 40, 55, 193, 724, 1105
Lsp1109I GCAGC 4 cut(s) 130, 445, 1120, 1177
LweI GCATC 2 cut(s) 445, 781
MaeI CTAG 2 cut(s) 42, 1172
MaeIII GTNAC 4 cut(s) 214, 274, 362, 1153
MalI GATC 5 cut(s) 553, 702, 933, 1011, 1149
MboI GATC 5 cut(s) 551, 700, 931, 1009, 1147
MboII GAAGA 5 cut(s) 218, 354, 920, 1226, 1269
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 3 cut(s) 37, 60, 729
MlsI TGGCCA 1 cut(s) 398
MluCI AATT 7 cut(s) 149, 283, 422, 511, 863, 953, 1270
MluNI TGGCCA 1 cut(s) 398
MlyI GAGTC 2 cut(s) 712, 1319
MmeI TCCRAC 1 cut(s) 1030
Mox20I TGGCCA 1 cut(s) 398
Mph1103I ATGCAT 1 cut(s) 848
MroI TCCGGA 1 cut(s) 1237
MroXI GAANNNNTTC 2 cut(s) 535, 638
MscI TGGCCA 1 cut(s) 398
MseI TTAA 4 cut(s) 102, 135, 417, 849
MslI CAYNNNNRTG 2 cut(s) 72, 769
Msp20I TGGCCA 1 cut(s) 398
MspA1I CMGCKG 2 cut(s) 371, 1168
MspI CCGG 1 cut(s) 1238
Mva1269I GAATGC 1 cut(s) 917
MwoI GCNNNNNNNGC 2 cut(s) 13, 331
NcoI CCATGG 1 cut(s) 764
NdeII GATC 5 cut(s) 551, 700, 931, 1009, 1147
NlaIII CATG 7 cut(s) 74, 206, 768, 774, 846, 983, 1270
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 214, 274, 362
NsbI TGCGCA 1 cut(s) 324
NsiI ATGCAT 1 cut(s) 848
NspI RCATGY 2 cut(s) 774, 983
NspV TTCGAA 1 cut(s) 465
PaeI GCATGC 1 cut(s) 983
PagI TCATGA 1 cut(s) 1266
PciI ACATGT 1 cut(s) 770
PctI GAATGC 1 cut(s) 917
PdmI GAANNNNTTC 2 cut(s) 535, 638
PfeI GAWTC 3 cut(s) 209, 756, 1234
PkrI GCNGC 6 cut(s) 145, 460, 917, 1110, 1167, 1170
PleI GAGTC 2 cut(s) 712, 1318
PpsI GAGTC 2 cut(s) 712, 1318
PscI ACATGT 1 cut(s) 770
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PstI CTGCAG 1 cut(s) 811
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 1 cut(s) 1068
RsaNI GTAC 1 cut(s) 1067
RseI CAYNNNNRTG 2 cut(s) 72, 769
SaqAI TTAA 4 cut(s) 102, 135, 417, 849
SatI GCNGC 6 cut(s) 144, 459, 916, 1109, 1166, 1169
Sau3AI GATC 5 cut(s) 551, 700, 931, 1009, 1147
Sau96I GGNCC 1 cut(s) 5
SbfI CCTGCAGG 1 cut(s) 811
SchI GAGTC 2 cut(s) 712, 1319
SdaI CCTGCAGG 1 cut(s) 811
SduI GDGCHC 3 cut(s) 37, 60, 729
SfaNI GCATC 2 cut(s) 445, 781
SfcI CTRYAG 2 cut(s) 617, 807
SfuI TTCGAA 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 72, 769
SphI GCATGC 1 cut(s) 983
Sse8387I CCTGCAGG 1 cut(s) 811
Sse9I AATT 7 cut(s) 149, 283, 422, 511, 863, 953, 1270
SsiI CCGC 3 cut(s) 371, 916, 1168
SspMI CTAG 2 cut(s) 42, 1172
StyI CCWWGG 1 cut(s) 764
TaaI ACNGT 7 cut(s) 125, 304, 362, 487, 500, 572, 1137
TaqI TCGA 2 cut(s) 465, 759
TasI AATT 7 cut(s) 149, 283, 422, 511, 863, 953, 1270
TatI WGTACW 1 cut(s) 1066
TauI GCSGC 2 cut(s) 918, 1171
TfiI GAWTC 3 cut(s) 209, 756, 1234
Tru1I TTAA 4 cut(s) 102, 135, 417, 849
Tru9I TTAA 4 cut(s) 102, 135, 417, 849
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 3 cut(s) 214, 274, 362
TseI GCWGC 4 cut(s) 143, 458, 1108, 1165
Tsp45I GTSAC 3 cut(s) 214, 274, 362
TspDTI ATGAA 5 cut(s) 215, 219, 1247, 1255, 1283
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 1 cut(s) 130
XapI RAATTY 3 cut(s) 149, 283, 1270
XceI RCATGY 2 cut(s) 774, 983
XmiI GTMKAC 1 cut(s) 567
XmnI GAANNNNTTC 2 cut(s) 535, 638
XspI CTAG 2 cut(s) 42, 1172
Zsp2I ATGCAT 1 cut(s) 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.