Rh6BG312200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000280
Physical Location & Seq
Reverse (-)
54164780 .. 54167134
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG312200.1

Sequence Viewer

Length: 444 bp
ATGGTTCTCAATCTGTTCTTAATAGTTGTCCTCAGAATTAGGTCCCTCTCCAATTCAAATCCCGATTCTCTGTTTTTTCTCGGGGAAATCGAAAACCAAAGCTGTGTCAAGCCCACCCGTAGTCCCAGACAACAAAACTTGAGAACCCCCGAGTCCCCGACGAAGACTCTCACTCCCTCTCAGTCTCTCACGTACTATACTGCTCTAAGAGATCAAACCTTAGATGTACGAGTCAAACGTATGATTAGCCAAGGAGTTATAGAGCAAAGTTCATTGACATCTGCCGTAATACTAGTCAGACATCTACTGCTGATTTTGTTGTTGATTTTGTATAGATACGTGTTTGAGGGTCATATAAATTATAGCAGAACCCAGCAGTTGTACAGGATTCTAGGATGGAGAAAAGCAATGGCAATAGAGCAAACCAGATTTTTTGGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

17.02

Weight (kDa)

10.32

Isoelectric Point (pI)

69.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 194, 228, 383
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 1 cut(s) 57
AhlI ACTAGT 1 cut(s) 292
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 189
Ama87I CYCGRG 2 cut(s) 80, 149
AspS9I GGNCC 1 cut(s) 42
AvaI CYCGRG 2 cut(s) 80, 149
AvaII GGWCC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 292
BfaI CTAG 2 cut(s) 293, 392
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 2 cut(s) 80, 149
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 160
BsaAI YACGTR 2 cut(s) 192, 340
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bse3DI GCAATG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 46, 194
BseYI CCCAGC 1 cut(s) 372
BsiHKCI CYCGRG 2 cut(s) 80, 149
BslFI GGGAC 3 cut(s) 28, 108, 139
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 3 cut(s) 28, 108, 139
BsoBI CYCGRG 2 cut(s) 80, 149
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 45, 193
BspLI GGNNCC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 414
BsrGI TGTACA 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 250
BstAUI TGTACA 1 cut(s) 381
BstBAI YACGTR 2 cut(s) 192, 340
BstDEI CTNAG 4 cut(s) 32, 180, 206, 220
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 3 cut(s) 193, 227, 382
CviJI RGCY 3 cut(s) 102, 112, 249
CviKI_1 RGCY 3 cut(s) 102, 112, 249
CviQI GTAC 3 cut(s) 193, 227, 382
DdeI CTNAG 4 cut(s) 32, 180, 206, 220
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 42
Eco88I CYCGRG 2 cut(s) 80, 149
EcoO109I RGGNCCY 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaiI YATR 8 cut(s) 198, 242, 260, 333, 354, 356, 363, 442
FaqI GGGAC 3 cut(s) 28, 108, 139
FokI GGATG 1 cut(s) 408
FspBI CTAG 2 cut(s) 293, 392
GsaI CCCAGC 1 cut(s) 376
HinfI GANTC 5 cut(s) 65, 152, 166, 231, 388
Hpy188I TCNGA 2 cut(s) 35, 299
Hpy188III TCNNGA 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 163
HpyCH4IV ACGT 3 cut(s) 191, 238, 339
HpyF3I CTNAG 4 cut(s) 32, 180, 206, 220
HpySE526I ACGT 3 cut(s) 191, 238, 339
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 437
LpnPI CCDG 4 cut(s) 139, 370, 386, 439
MaeI CTAG 2 cut(s) 293, 392
MaeII ACGT 3 cut(s) 191, 238, 339
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 175
MluCI AATT 3 cut(s) 36, 52, 358
MlyI GAGTC 3 cut(s) 160, 161, 240
MnlI CCTC 4 cut(s) 41, 56, 187, 340
MseI TTAA 1 cut(s) 20
NdeII GATC 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 235
PfeI GAWTC 2 cut(s) 65, 388
PleI GAGTC 3 cut(s) 160, 160, 239
PpsI GAGTC 3 cut(s) 160, 160, 239
Ppu21I YACGTR 2 cut(s) 192, 340
PpuMI RGGWCCY 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 42
PspPPI RGGWCCY 1 cut(s) 42
RsaI GTAC 3 cut(s) 194, 228, 383
RsaNI GTAC 3 cut(s) 193, 227, 382
SaqAI TTAA 1 cut(s) 20
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 3 cut(s) 160, 161, 240
SetI ASST 6 cut(s) 44, 104, 194, 221, 241, 342
SinI GGWCC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SpeI ACTAGT 1 cut(s) 292
Sse9I AATT 3 cut(s) 36, 52, 358
SspMI CTAG 2 cut(s) 293, 392
StyI CCWWGG 1 cut(s) 250
TaiI ACGT 3 cut(s) 194, 241, 342
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 36, 52, 358
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 2 cut(s) 65, 388
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 42
XspI CTAG 2 cut(s) 293, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.