Rorug07G0149600

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000280
Physical Location & Seq
Reverse (-)
11880272 .. 11884714
4443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0149600.1

Sequence Viewer

Length: 1530 bp
ATGAACAGCTTGATCAGAAGAAAGCTCGTTGAAAATGCATACAGATTGAAACTTTCACACAAGGGTTTCTGTACTGGTGCAGCTGCTAAATTTTCCAGCTCCAATGGTGCCCAACCAAGCCATGATCATGTGGGGCAGCAGAAATCTTCAAATAAAAGCGAACCGTATGACATTGCTATTGTTGGAGGAGGCATGGTTGGCATGGCCCTAGCTTGTTCCTTGGCTAGAATGCCGATGACAAAGCACTTGAAGGTGGCCATCATTGATAGCAATCCTGCATTATCTAATGGACTCTCAATCAAGAAAGAAGACCCCCCTGATGCAAGGGTCAGTACAGTAACACCTGCAACCATATCTCTCTTCAAAGATATTGGCGCTTGGAAATATGTTGAACAGCATCGACATGCATATTTTGATCAAATGCAGGTTTGGGACTATACTGGCTTAGGATATACGAGATACGATGCTAGAGATGTCCATAAAGAATATCTGGGGTGTGTAGTGGAGAATAAAGTGCTGCACAGTTCTCTTTTGTCATGCATGCAGGATACAGATTTCCAGAAGACTATTTACCCTTCCAGATTATCCTCAATGGCTTTAAATCCAGGCATTCTATCTATGGGGATGAACAGCACATCATCTGGGTTGAATGAGCGTAGAAACTTAGCAAAACTGGATCTAAGTGATGGCAATAGTTTATATGCAAAGTTGGTGGTTGGAGCTGATGGGTCCAAGTCACGTGTTAGGGAATTGGCAGGATTTAAGACGACTGGATGGAAATACTCACAGAATGCAATCATTTGCACAGTAGAGCATCATGCAGAAAATCGATGTGCATGGCAAAGATTTCTACCTACCGGACCAATTGCACTTTTGCCTATTGGTGATAATTTTAGTAACATTGTTTGGACTATGAACCCGGAAGAAGCAACTGACCATAAATCAATGGTCGAGGATGATTTTGTGAAAGCCGTAAATTCTGCTCTTGATTATGGATTTGGCCCTCATCCTAAGTCAAGCAACTTCGGAAGTGGAGGCATTTTTTCTTGGTTTAAGACAGACACAACTATTTCTGCTAATGAATACTTCAAAGTTCCGCCGAAAGTGATGAAGTTGGCATCTGAAAGAATGGTGTTTCCCTTGTCTTTGATGCATGCCAATAACTATGTGTCAAAGCATGTGGTTCTAATTGGCGATGCAGCACACACTGTTCACCCTTTGGCTGGGCAAGGAGTTAATCTGGGTTTTGGAGATGCATTTGCTCTTTCAAGAATCATTTCTGAGGGCATTGCAGTGGGAACAGATATTTCTGAGGTCAATTTGTTGAAGAAATATGAAGCAGAGAGAAAAACGGCTAATGTTACAATGATGGCAATCCTAGATGGTTTCCAGAGGGCTTACTCAGTTGATTTTGGACCTTTAAATGTTCTACGCGCTGCTGCATTCCATGGAGCACAGTACATTCCACCCCTTAAAAGGAGTATAATCTCATATGCATCAGGGGATCAGAGATTGCCAATATTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

509

Amino Acids

55.81

Weight (kDa)

8.96

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 57 - 329 3.2e-08 FAD binding domain
FAD_binding_3 PF01494 377 - 452 1.2e-11 FAD binding domain
SE PF08491 379 - 483 1.2e-07 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 2 cut(s) 352, 415
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 1 cut(s) 1434
AciI CCGC 1 cut(s) 1097
AclWI GGATC 2 cut(s) 684, 1512
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 89, 976
AcvI CACGTG 1 cut(s) 740
AfaI GTAC 3 cut(s) 73, 334, 1460
AfiI CCNNNNNNNGG 2 cut(s) 1223, 1476
AflIII ACRYGT 1 cut(s) 739
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 6 cut(s) 9, 25, 83, 99, 212, 722
AluI AGCT 6 cut(s) 9, 25, 83, 99, 212, 722
Alw21I GWGCWC 1 cut(s) 1456
AlwI GGATC 2 cut(s) 684, 1512
AoxI GGCC 3 cut(s) 204, 255, 1000
ApeKI GCWGC 7 cut(s) 80, 83, 136, 517, 1199, 1436, 1439
ApoI RAATTY 2 cut(s) 89, 976
Asp700I GAANNNNTTC 1 cut(s) 1276
AspLEI GCGC 2 cut(s) 377, 1436
AspS9I GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
AsuC2I CCSGG 1 cut(s) 920
AsuHPI GGTGA 2 cut(s) 896, 1205
AvaII GGWCC 3 cut(s) 729, 860, 1415
BaeGI GKGCMC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 554, 586
BbrPI CACGTG 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 315, 569
Bbv12I GWGCWC 1 cut(s) 1456
BbvI GCAGC 7 cut(s) 70, 92, 148, 504, 1211, 1423, 1426
BccI CCATC 6 cut(s) 266, 680, 719, 768, 1363, 1376
BceAI ACGGC 2 cut(s) 956, 1368
BciT130I CCWGG 1 cut(s) 606
BciVI GTATCC 1 cut(s) 541
BclI TGATCA 3 cut(s) 12, 124, 415
BcnI CCSGG 1 cut(s) 920
BfaI CTAG 4 cut(s) 209, 225, 468, 1379
BfoI RGCGCY 1 cut(s) 378
BfuAI ACCTGC 2 cut(s) 352, 415
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
BlsI GCNGC 7 cut(s) 82, 85, 138, 519, 1201, 1438, 1441
Bme1390I CCNGG 2 cut(s) 606, 920
Bme18I GGWCC 3 cut(s) 729, 860, 1415
BmgT120I GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
BmiI GGNNCC 2 cut(s) 109, 730
BmrFI CCNGG 2 cut(s) 606, 920
BmsI GCATC 9 cut(s) 310, 406, 454, 823, 1127, 1140, 1186, 1243, 1505
BpiI GAAGAC 2 cut(s) 315, 569
Bpu10I CCTNAGC 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 920
Bsa29I ATCGAT 1 cut(s) 829
BsaAI YACGTR 1 cut(s) 740
BsaBI GATNNNNATC 2 cut(s) 270, 1373
BsaJI CCNNGG 2 cut(s) 219, 1447
BsaWI WCCGGW 1 cut(s) 857
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 1223, 1476
Bse1I ACTGG 4 cut(s) 79, 445, 678, 775
Bse3DI GCAATG 2 cut(s) 171, 1287
Bse8I GATNNNNATC 2 cut(s) 270, 1373
BseBI CCWGG 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 829
BseDI CCNNGG 2 cut(s) 219, 1447
BseGI GGATG 4 cut(s) 630, 779, 961, 1006
BseJI GATNNNNATC 2 cut(s) 270, 1373
BseLI CCNNNNNNNGG 2 cut(s) 1223, 1476
BseMI GCAATG 2 cut(s) 171, 1287
BseMII CTCAG 3 cut(s) 1272, 1302, 1416
BseNI ACTGG 4 cut(s) 79, 445, 678, 775
BseRI GAGGAG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 7 cut(s) 70, 92, 148, 504, 1211, 1423, 1426
BseYI CCCAGC 1 cut(s) 1223
BsgI GTGCAG 2 cut(s) 99, 503
Bsh1236I CGCG 1 cut(s) 1434
BshFI GGCC 3 cut(s) 206, 257, 1002
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 1456
BsiSI CCGG 2 cut(s) 858, 920
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 1223, 1476
BsmFI GGGAC 1 cut(s) 446
BsmI GAATGC 4 cut(s) 234, 609, 796, 1442
BsnI GGCC 3 cut(s) 206, 257, 1002
Bsp1286I GDGCHC 2 cut(s) 112, 1456
Bsp143I GATC 5 cut(s) 12, 124, 415, 676, 1504
Bsp19I CCATGG 1 cut(s) 1447
BspACI CCGC 1 cut(s) 1097
BspANI GGCC 3 cut(s) 206, 257, 1002
BspCNI CTCAG 3 cut(s) 1273, 1303, 1415
BspDI ATCGAT 1 cut(s) 829
BspFNI CGCG 1 cut(s) 1434
BspLI GGNNCC 2 cut(s) 109, 730
BspMI ACCTGC 2 cut(s) 352, 415
BspPI GGATC 2 cut(s) 684, 1512
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 2 cut(s) 171, 1287
BsrI ACTGG 4 cut(s) 79, 445, 678, 775
BssECI CCNNGG 2 cut(s) 219, 1447
BssMI GATC 5 cut(s) 12, 124, 415, 676, 1504
BssT1I CCWWGG 2 cut(s) 219, 1447
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 6 cut(s) 165, 337, 524, 808, 1210, 1458
Bst6I CTCTTC 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 542, 1155
BstDEI CTNAG 7 cut(s) 445, 664, 680, 1011, 1281, 1311, 1402
BstDSI CCRYGG 1 cut(s) 1447
BstF5I GGATG 4 cut(s) 630, 779, 961, 1006
BstFNI CGCG 1 cut(s) 1434
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 2 cut(s) 377, 1436
BstKTI GATC 5 cut(s) 15, 127, 418, 679, 1507
BstMBI GATC 5 cut(s) 12, 124, 415, 676, 1504
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 4 cut(s) 407, 544, 1157, 1181
BstSCI CCNGG 2 cut(s) 604, 918
BstSLI GKGCMC 1 cut(s) 112
BstUI CGCG 1 cut(s) 1434
BstV1I GCAGC 7 cut(s) 70, 92, 148, 504, 1211, 1423, 1426
BstV2I GAAGAC 2 cut(s) 315, 569
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
Bsu15I ATCGAT 1 cut(s) 829
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 3 cut(s) 206, 257, 1002
BsuTUI ATCGAT 1 cut(s) 829
BtgI CCRYGG 1 cut(s) 1447
BtgZI GCGATG 1 cut(s) 1209
BtsCI GGATG 4 cut(s) 630, 779, 961, 1006
BtsI GCAGTG 1 cut(s) 1299
BtsIMutI CAGTG 2 cut(s) 1206, 1299
BveI ACCTGC 2 cut(s) 352, 415
Cac8I GCNNGC 2 cut(s) 542, 1155
CfoI GCGC 2 cut(s) 377, 1436
Cfr13I GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
ClaI ATCGAT 1 cut(s) 829
Csp6I GTAC 3 cut(s) 72, 333, 1459
CspCI CAANNNNNGTGG 4 cut(s) 693, 728, 1161, 1196
CviQI GTAC 3 cut(s) 72, 333, 1459
DdeI CTNAG 7 cut(s) 445, 664, 680, 1011, 1281, 1311, 1402
DpnI GATC 5 cut(s) 14, 126, 417, 678, 1506
DpnII GATC 5 cut(s) 12, 124, 415, 676, 1504
DraI TTTAAA 2 cut(s) 600, 1422
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
EciI GGCGGA 1 cut(s) 1086
Eco130I CCWWGG 2 cut(s) 219, 1447
Eco47I GGWCC 3 cut(s) 729, 860, 1415
Eco72I CACGTG 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 2 cut(s) 219, 1447
EcoT22I ATGCAT 6 cut(s) 40, 409, 542, 1155, 1258, 1498
ErhI CCWWGG 2 cut(s) 219, 1447
FaqI GGGAC 1 cut(s) 446
FauNDI CATATG 1 cut(s) 1492
FbaI TGATCA 3 cut(s) 12, 124, 415
Fnu4HI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
FokI GGATG 4 cut(s) 637, 786, 968, 993
Fsp4HI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
FspBI CTAG 4 cut(s) 209, 225, 468, 1379
GlaI GCGC 2 cut(s) 376, 1435
GluI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
GsaI CCCAGC 1 cut(s) 1227
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 3 cut(s) 206, 257, 1002
HapII CCGG 2 cut(s) 858, 920
HhaI GCGC 2 cut(s) 377, 1436
Hin6I GCGC 2 cut(s) 375, 1434
HinP1I GCGC 2 cut(s) 375, 1434
HinfI GANTC 2 cut(s) 291, 1272
HpaII CCGG 2 cut(s) 858, 920
HphI GGTGA 2 cut(s) 896, 1205
Hpy166II GTNNAC 1 cut(s) 1213
Hpy188I TCNGA 6 cut(s) 17, 1028, 1123, 1282, 1312, 1509
Hpy188III TCNNGA 7 cut(s) 301, 559, 579, 986, 1269, 1390, 1527
Hpy8I GTNNAC 1 cut(s) 1213
HpyAV CCTTC 2 cut(s) 244, 585
HpyCH4III ACNGT 6 cut(s) 165, 337, 524, 808, 1210, 1458
HpyCH4IV ACGT 1 cut(s) 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 7 cut(s) 445, 664, 680, 1011, 1281, 1311, 1402
HpySE526I ACGT 1 cut(s) 739
HspAI GCGC 2 cut(s) 375, 1434
Ksp22I TGATCA 3 cut(s) 12, 124, 415
Kzo9I GATC 5 cut(s) 12, 124, 415, 676, 1504
LmnI GCTCC 3 cut(s) 104, 719, 1451
Lsp1109I GCAGC 7 cut(s) 70, 92, 148, 504, 1211, 1423, 1426
LweI GCATC 9 cut(s) 310, 406, 454, 823, 1127, 1140, 1186, 1243, 1505
MaeI CTAG 4 cut(s) 209, 225, 468, 1379
MaeII ACGT 1 cut(s) 739
MaeIII GTNAC 4 cut(s) 337, 735, 896, 1360
MalI GATC 5 cut(s) 14, 126, 417, 678, 1506
MboI GATC 5 cut(s) 12, 124, 415, 676, 1504
MboII GAAGA 7 cut(s) 30, 138, 320, 352, 574, 935, 1339
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 2 cut(s) 112, 1456
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 7 cut(s) 89, 749, 864, 889, 976, 1188, 1318
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 2 cut(s) 163, 697
MnlI CCTC 9 cut(s) 179, 182, 598, 946, 1014, 1028, 1276, 1306, 1386
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 6 cut(s) 40, 409, 542, 1155, 1258, 1498
MroXI GAANNNNTTC 1 cut(s) 1276
MscI TGGCCA 1 cut(s) 257
MseI TTAA 6 cut(s) 599, 762, 1053, 1236, 1421, 1473
MslI CAYNNNNRTG 3 cut(s) 126, 402, 1292
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 858, 920
MspR9I CCNGG 2 cut(s) 606, 920
MunI CAATTG 1 cut(s) 864
Mva1269I GAATGC 4 cut(s) 234, 609, 796, 1442
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 1 cut(s) 1434
MwoI GCNNNNNNNGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 920
NcoI CCATGG 1 cut(s) 1447
NdeI CATATG 1 cut(s) 1492
NdeII GATC 5 cut(s) 12, 124, 415, 676, 1504
NlaIV GGNNCC 2 cut(s) 109, 730
NmuCI GTSAC 1 cut(s) 735
NsiI ATGCAT 6 cut(s) 40, 409, 542, 1155, 1258, 1498
NspI RCATGY 4 cut(s) 407, 544, 1157, 1181
PaeI GCATGC 2 cut(s) 544, 1157
PaqCI CACCTGC 1 cut(s) 352
PctI GAATGC 4 cut(s) 234, 609, 796, 1442
PdmI GAANNNNTTC 1 cut(s) 1276
PfeI GAWTC 1 cut(s) 1272
PkrI GCNGC 7 cut(s) 82, 85, 138, 519, 1201, 1438, 1441
PleI GAGTC 1 cut(s) 285
PmaCI CACGTG 1 cut(s) 740
PmlI CACGTG 1 cut(s) 740
PpsI GAGTC 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 604
PspCI CACGTG 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 1223
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 109, 730
PspPI GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
PsuI RGATCY 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 3 cut(s) 73, 334, 1460
RsaNI GTAC 3 cut(s) 72, 333, 1459
RseI CAYNNNNRTG 3 cut(s) 126, 402, 1292
SaqAI TTAA 6 cut(s) 599, 762, 1053, 1236, 1421, 1473
SatI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
Sau3AI GATC 5 cut(s) 12, 124, 415, 676, 1504
Sau96I GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 2 cut(s) 606, 920
SduI GDGCHC 2 cut(s) 112, 1456
SfaNI GCATC 9 cut(s) 310, 406, 454, 823, 1127, 1140, 1186, 1243, 1505
SinI GGWCC 3 cut(s) 729, 860, 1415
SmiMI CAYNNNNRTG 3 cut(s) 126, 402, 1292
SphI GCATGC 2 cut(s) 544, 1157
Sse9I AATT 7 cut(s) 89, 749, 864, 889, 976, 1188, 1318
SsiI CCGC 1 cut(s) 1097
SspI AATATT 1 cut(s) 1521
SspMI CTAG 4 cut(s) 209, 225, 468, 1379
StyD4I CCNGG 2 cut(s) 604, 918
StyI CCWWGG 2 cut(s) 219, 1447
TaaI ACNGT 6 cut(s) 165, 337, 524, 808, 1210, 1458
TaiI ACGT 1 cut(s) 742
TaqI TCGA 3 cut(s) 400, 829, 951
TasI AATT 7 cut(s) 89, 749, 864, 889, 976, 1188, 1318
TatI WGTACW 3 cut(s) 71, 332, 1458
TfiI GAWTC 1 cut(s) 1272
Tru1I TTAA 6 cut(s) 599, 762, 1053, 1236, 1421, 1473
Tru9I TTAA 6 cut(s) 599, 762, 1053, 1236, 1421, 1473
TscAI CASTG 2 cut(s) 1213, 1299
TseFI GTSAC 1 cut(s) 735
TseI GCWGC 7 cut(s) 80, 83, 136, 517, 1199, 1436, 1439
Tsp45I GTSAC 1 cut(s) 735
TspDTI ATGAA 6 cut(s) 17, 641, 929, 1095, 1124, 1350
TspRI CASTG 2 cut(s) 1213, 1299
VpaK11BI GGWCC 3 cut(s) 729, 860, 1415
XapI RAATTY 2 cut(s) 89, 976
XceI RCATGY 4 cut(s) 407, 544, 1157, 1181
XmnI GAANNNNTTC 1 cut(s) 1276
XspI CTAG 4 cut(s) 209, 225, 468, 1379
Zsp2I ATGCAT 6 cut(s) 40, 409, 542, 1155, 1258, 1498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.