RLG00000024884

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000280
Physical Location & Seq
Reverse (-)
40050275 .. 40052947
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024884

Sequence Viewer

Length: 2673 bp
ATGGCGGCGATCTGCAGAGACGGATTGTTCTCTCGGGTTTATTACAGAAAGCGGCGGAGGCAAGAGAGCGGCGGCGGCGGTGTGGTGGAGAAGGGCGGCGAGGGTATTTTGGGAATTGAAGACGAAGAGTCGACTTTGACTCTGGCCGTGATGTTGAAGCGGCTGCGTCGGGAAAAGAAGATGGGGAAGAGTGTTCTGGAGGGTTTAGAGCATAAAGATTTGATCTTTGGTGATCGAATTGAAGGGCAAGAGGGGAAAGGCGAAGACGGTGAGGAGAAGAATCAAGAACATGGGGTTTTTGATGTGGGTTTTGGCAAAGAGGGAGTGAGTGATGGAATTGAAGAGGGTTTGGTGAAGAAGAAGAAGAAATGTGGTAAAAATGGTATGAAATCTGAGAGGTTTGAAGAAAATGGTGGTGTGGGTTTTGGTAAAGAGAGAGTGAGAGATGAAAATGAAGAGGGTTTAGTGAAGACTGAGCATGTTAATGGGGTTGTGGAGAAGTATGGAAGATGGAGCAGAGCAGATGTGTCGACAATGTGTCATCAATGTCAGAGAAATGATAATGGGAGAGTTGTTCGTTGCAGGGGGTGTTCAGAAAGGGGAGAGAGAAAGCGGTATTGTATTCCTTGCATAAAGAAATGGTATCCCAATTCATCAGAGGATGATTTTGCAGAGGCTTGTCCTGTTTGCCTTGGGAATTGTAATTGCAAAGCTTGCTTGCGTTTGGATGTGCCTCTGAGATGCTTGAAGAATCGAGACTTGGAGATTGGGGAAGACGAGAGGCTAGAGCAGTGTAAGTATTTGGTGAATCGGTTGCTTCCTTATTTGAAGAGGATTAATGATGAACAAGTGAGTGAGATGAAGTTTGAGGCTGAGAAGCAATGGTTGGTGGAGTTTGAGGAGATGGAAATTGAAAAGTCTAATTGCCGTGTTGGTGAGAGGATGTATTGCAACAACTGCAAGACTTCGATTTTCGACTTTCATAGAAGCTGTCCTGGATGCCAATATGATCTGTGTCTTAAGTGTTGCCGGGAGATTCGGGGTGGAGAGTTGAAGGGAGGTGGGGAGGAAATGGTTGAGAAATATGGAAATCGGGGATTTGAGTGTTTCGATGGTGAGGGAAAGATTATTCAGAGGAATGGAGTGGGAACTAGGAGGTTGCGGTCTTCTTCTGCTATAAAGTCAAAGTTTGAATGGAAAGCAGATAAAGATGGAAGCATTCGTTGCCCCCCAGAGCACATGGAAGGTTGCGGTAAGTATCGTTTAGAACTTAGATGTTTGTTTCCTGGACATAAAGTCATGGAATTGGTAGAGAAAGCTGAAAATATAGATGAGAGCTATAAAAATTTTCATGTTAGTAGTGAAACTTGTGAAGAAAGTTGTTCATGTATAAACCCGGTGGATGATGTGAAGTGTAGAAAAGCAGCTTGTAGAGGTGATTCGAAGGACAACTATTTGTTCTGTCCAAGGGCTGAAAGCATTCAACCCGAGGATTTTGAGCATTTTCAGAGACATTGGATGAGGTGTGAGCCTGTTATTGTGAGCAATGCGCTTGAAAATGGTTCAGGGTTGAGTTGGGAACCCTTAGTCATGTGGAGGGCTTTTCGTCAAGTTAATAATACTAAGCATGAGAAGGACGTGGAAGTTCAGGCCATTGATTGCTTGGATTGGTGTTTCATCGATGTCAATATGCACAAATTTTTTATTGGATATTCTGAAGGCATGTTTGATACAAAAGACTGCCCTTGGATCCTAAAACTTAAAGACTGGCCGCCCTCCACTGATTTTGATAAACGTCTTCCTCGCCATGGCAAGGAGTTTGTGTGTTGCTTGCCTCTCAAGGAATACACTCATCCAGCATGTAGTATTCTAAACCTTGCTTGCCACTTGCCCAAAAGAGCTGTCAAACCTGACTTGGGGCCAAAGACATACATTGCATATGGGGTTGCTCAGGAACTTGGACGCGGAGATTCTGTGACAAAGCTTCACTGTGATATGTCTGATGCAGTTAACATTCTGACCCATGCTACTGAAGTGACCCTTGAACCTAAACATCTTGCTGCTATAGAAGAGGTGAAGAGAGAGCACTGGGAGCAAAACCAAAAGGAGATTTTTGGAAATTTTGGTCAAAGGAGACTCCCTTGCAAGGAAGAAGTTGATGATGCAGGTGAAGGAGGTGCTCTATGGGACATTTTCCGGGTACAAGATGTTCCAAAGCTTGAGCAATACATAAAGAAGCATTGTAGGGAATTCAGGCACTTCCAGTGTAGGCTATTAAAGCAGGTGGTTCATCCGATACACGATCAGACAATTTATCTGACTGCGGAGCACAAAAGAAAGCTTAAGACAGAATATGGGATTGAGCCATGGACATTTATCCAAAAGCTTGGTGATGCGGTGTTCATTCCTGCAGGCTGTCCACATCAGGTGAGAAACTTGAAGTCTTGCATTAAAGTTGCAATAGATTTTGTTTCCCCCGAAACCGTTGGCCAATGCTTTCGGTTGACAGAGGAGTTCCGCACTCTCCCGCCAGATCATAGGGCAAGCGAGGACAAGTTAGAGGTTAAAAAAATGATTGTTCATGCTGTCATTGATGCTGTGAAGGCGATTACCGGTGGGAAGGAGAGGCCAAAGGATGTAAAGCCTCATGAGAGGCCTATGTGCGAGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

891

Amino Acids

102.12

Weight (kDa)

6.85

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 720 - 823 2.5e-13 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2156, 2272
Acc36I ACCTGC 2 cut(s) 2156, 2272
AccBSI CCGCTC 1 cut(s) 69
AccI GTMKAC 2 cut(s) 131, 530
AccII CGCG 1 cut(s) 1965
AclWI GGATC 2 cut(s) 1744, 1757
AcoI YGGCCR 3 cut(s) 144, 1769, 2488
AcsI RAATTY 4 cut(s) 1345, 1697, 2119, 2249
AcuI CTGAAG 2 cut(s) 1737, 2052
AfaI GTAC 1 cut(s) 2202
AfiI CCNNNNNNNGG 4 cut(s) 1808, 1813, 1916, 2146
AflII CTTAAG 2 cut(s) 1019, 2342
AgeI ACCGGT 1 cut(s) 2612
AhdI GACNNNNNGTC 3 cut(s) 127, 537, 1295
AjiI CACGTC 1 cut(s) 1639
AjnI CCWGG 2 cut(s) 994, 1285
AjuI GAANNNNNNNTTGG 4 cut(s) 743, 775, 869, 901
Alw21I GWGCWC 4 cut(s) 1239, 2088, 2182, 2331
Alw26I GTCTC 4 cut(s) 12, 750, 1504, 2128
AlwI GGATC 2 cut(s) 1744, 1757
Ama87I CYCGRG 2 cut(s) 33, 1487
AoxI GGCC 7 cut(s) 144, 1650, 1769, 1919, 2488, 2627, 2654
ApeKI GCWGC 3 cut(s) 163, 1424, 2060
ApoI RAATTY 4 cut(s) 1345, 1697, 2119, 2249
ArsI GACNNNNNNTTYG 2 cut(s) 1887, 1919
AseI ATTAAT 1 cut(s) 837
AsiGI ACCGGT 1 cut(s) 2612
Asp700I GAANNNNTTC 1 cut(s) 1479
AspLEI GCGC 1 cut(s) 1552
AspS9I GGNCC 1 cut(s) 1919
AsuC2I CCSGG 3 cut(s) 1031, 1397, 2198
AsuII TTCGAA 1 cut(s) 1442
AvaI CYCGRG 2 cut(s) 33, 1487
BalI TGGCCA 1 cut(s) 2490
BamHI GGATCC 1 cut(s) 1749
BbsI GAAGAC 6 cut(s) 126, 270, 476, 780, 1158, 1790
Bbv12I GWGCWC 4 cut(s) 1239, 2088, 2182, 2331
BbvI GCAGC 3 cut(s) 150, 1436, 2047
BccI CCATC 6 cut(s) 175, 326, 504, 898, 1106, 1205
BceAI ACGGC 2 cut(s) 131, 912
BcgI CGANNNNNNTGC 2 cut(s) 510, 544
BciT130I CCWGG 2 cut(s) 996, 1287
BciVI GTATCC 1 cut(s) 654
BcnI CCSGG 3 cut(s) 1031, 1397, 2198
BcoDI GTCTC 4 cut(s) 12, 750, 1504, 2128
BfaI CTAG 2 cut(s) 785, 1152
BfmI CTRYAG 3 cut(s) 13, 2064, 2409
BfrI CTTAAG 2 cut(s) 1019, 2342
BfuAI ACCTGC 2 cut(s) 2156, 2272
BfuI GTATCC 1 cut(s) 654
Bme1390I CCNGG 5 cut(s) 996, 1031, 1287, 1397, 2198
BmeRI GACNNNNNGTC 3 cut(s) 127, 537, 1295
BmeT110I CYCGRG 2 cut(s) 33, 1487
BmgBI CACGTC 1 cut(s) 1639
BmgT120I GGNCC 1 cut(s) 1919
BmiI GGNNCC 3 cut(s) 1581, 1751, 1920
BmrFI CCNGG 5 cut(s) 996, 1031, 1287, 1397, 2198
BmrI ACTGGG 1 cut(s) 2098
BmsI GCATC 6 cut(s) 731, 989, 1993, 2152, 2383, 2584
BmuI ACTGGG 1 cut(s) 2098
BpiI GAAGAC 6 cut(s) 126, 270, 476, 780, 1158, 1790
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 1950
Bpu14I TTCGAA 1 cut(s) 1442
BpuEI CTTGAG 2 cut(s) 1823, 2240
BpuMI CCSGG 3 cut(s) 1031, 1397, 2198
Bsa29I ATCGAT 1 cut(s) 1680
BsaJI CCNNGG 6 cut(s) 691, 1466, 1488, 1745, 1807, 2366
BsaWI WCCGGW 1 cut(s) 2612
BsaXI ACNNNNNCTCC 4 cut(s) 1808, 1838, 1959, 1989
Bsc4I CCNNNNNNNGG 4 cut(s) 1808, 1813, 1916, 2146
Bse118I RCCGGY 1 cut(s) 2612
Bse1I ACTGG 3 cut(s) 1772, 2093, 2263
Bse3DI GCAATG 3 cut(s) 887, 1552, 1932
BseBI CCWGG 2 cut(s) 996, 1287
BseCI ATCGAT 1 cut(s) 1680
BseDI CCNNGG 6 cut(s) 691, 1466, 1488, 1745, 1807, 2366
BseGI GGATG 9 cut(s) 667, 733, 948, 1004, 1408, 1524, 1852, 2290, 2641
BseLI CCNNNNNNNGG 4 cut(s) 1808, 1813, 1916, 2146
BseMI GCAATG 3 cut(s) 887, 1552, 1932
BseMII CTCAG 5 cut(s) 384, 465, 728, 864, 1964
BseNI ACTGG 3 cut(s) 1772, 2093, 2263
BseRI GAGGAG 3 cut(s) 287, 914, 2525
BseXI GCAGC 3 cut(s) 150, 1436, 2047
Bsh1236I CGCG 1 cut(s) 1965
BshFI GGCC 7 cut(s) 146, 1652, 1771, 1921, 2490, 2629, 2656
BshTI ACCGGT 1 cut(s) 2612
BshVI ATCGAT 1 cut(s) 1680
BsiHKAI GWGCWC 4 cut(s) 1239, 2088, 2182, 2331
BsiHKCI CYCGRG 2 cut(s) 33, 1487
BsiSI CCGG 4 cut(s) 1030, 1397, 2197, 2613
BslFI GGGAC 1 cut(s) 2201
BslI CCNNNNNNNGG 4 cut(s) 1808, 1813, 1916, 2146
BsmAI GTCTC 4 cut(s) 12, 750, 1504, 2128
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 2201
BsmI GAATGC 2 cut(s) 1218, 1479
BsnI GGCC 7 cut(s) 146, 1652, 1771, 1921, 2490, 2629, 2656
BsoBI CYCGRG 2 cut(s) 33, 1487
Bsp119I TTCGAA 1 cut(s) 1442
Bsp1286I GDGCHC 4 cut(s) 1239, 2088, 2182, 2331
Bsp143I GATC 7 cut(s) 9, 222, 232, 1009, 1749, 2302, 2533
Bsp19I CCATGG 2 cut(s) 1807, 2366
BspANI GGCC 7 cut(s) 146, 1652, 1771, 1921, 2490, 2629, 2656
BspCNI CTCAG 5 cut(s) 385, 466, 729, 865, 1963
BspDI ATCGAT 1 cut(s) 1680
BspFNI CGCG 1 cut(s) 1965
BspHI TCATGA 1 cut(s) 2647
BspLI GGNNCC 3 cut(s) 1581, 1751, 1920
BspMAI CTGCAG 2 cut(s) 17, 2413
BspMI ACCTGC 2 cut(s) 2156, 2272
BspPI GGATC 2 cut(s) 1744, 1757
BspT104I TTCGAA 1 cut(s) 1442
BspTI CTTAAG 2 cut(s) 1019, 2342
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 3 cut(s) 887, 1552, 1932
BsrFI RCCGGY 1 cut(s) 2612
BsrI ACTGG 3 cut(s) 1772, 2093, 2263
BssAI RCCGGY 1 cut(s) 2612
BssECI CCNNGG 6 cut(s) 691, 1466, 1488, 1745, 1807, 2366
BssMI GATC 7 cut(s) 9, 222, 232, 1009, 1749, 2302, 2533
BssT1I CCWWGG 5 cut(s) 691, 1466, 1745, 1807, 2366
Bst2UI CCWGG 2 cut(s) 996, 1287
Bst4CI ACNGT 3 cut(s) 269, 1991, 2485
Bst6I CTCTTC 7 cut(s) 120, 182, 336, 450, 824, 2064, 2072
BstAFI CTTAAG 2 cut(s) 1019, 2342
BstAPI GCANNNNNTGC 3 cut(s) 714, 957, 1224
BstBI TTCGAA 1 cut(s) 1442
BstC8I GCNNGC 6 cut(s) 715, 719, 1832, 1882, 2413, 2545
BstDEI CTNAG 8 cut(s) 393, 474, 737, 873, 1271, 1585, 1623, 1950
BstDSI CCRYGG 2 cut(s) 1807, 2366
BstF5I GGATG 9 cut(s) 667, 733, 948, 1004, 1408, 1524, 1852, 2290, 2641
BstFNI CGCG 1 cut(s) 1965
BstHHI GCGC 1 cut(s) 1552
BstKTI GATC 7 cut(s) 12, 225, 235, 1012, 1752, 2305, 2536
BstMAI GTCTC 4 cut(s) 12, 750, 1504, 2128
BstMBI GATC 7 cut(s) 9, 222, 232, 1009, 1749, 2302, 2533
BstMWI GCNNNNNNNGC 8 cut(s) 58, 75, 714, 957, 1224, 2092, 2278, 2603
BstNI CCWGG 2 cut(s) 996, 1287
BstNSI RCATGY 3 cut(s) 482, 1726, 1863
BstSCI CCNGG 5 cut(s) 994, 1029, 1285, 1395, 2196
BstSFI CTRYAG 3 cut(s) 13, 2064, 2409
BstUI CGCG 1 cut(s) 1965
BstV1I GCAGC 3 cut(s) 150, 1436, 2047
BstV2I GAAGAC 6 cut(s) 126, 270, 476, 780, 1158, 1790
BstX2I RGATCY 1 cut(s) 1749
BstXI CCANNNNNNTGG 1 cut(s) 2387
BstYI RGATCY 1 cut(s) 1749
Bsu15I ATCGAT 1 cut(s) 1680
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 7 cut(s) 146, 1652, 1771, 1921, 2490, 2629, 2656
BsuTUI ATCGAT 1 cut(s) 1680
BtgI CCRYGG 2 cut(s) 1807, 2366
BtrI CACGTC 1 cut(s) 1639
BtsCI GGATG 9 cut(s) 667, 733, 948, 1004, 1408, 1524, 1852, 2290, 2641
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 5 cut(s) 797, 1779, 1987, 2086, 2270
BveI ACCTGC 2 cut(s) 2156, 2272
Cac8I GCNNGC 6 cut(s) 715, 719, 1832, 1882, 2413, 2545
CciI TCATGA 1 cut(s) 2647
CfoI GCGC 1 cut(s) 1552
Cfr10I RCCGGY 1 cut(s) 2612
Cfr13I GGNCC 1 cut(s) 1919
ClaI ATCGAT 1 cut(s) 1680
CseI GACGC 2 cut(s) 155, 1971
Csp6I GTAC 1 cut(s) 2201
CspAI ACCGGT 1 cut(s) 2612
CspCI CAANNNNNGTGG 2 cut(s) 1768, 1803
CviQI GTAC 1 cut(s) 2201
DdeI CTNAG 8 cut(s) 393, 474, 737, 873, 1271, 1585, 1623, 1950
DpnI GATC 7 cut(s) 11, 224, 234, 1011, 1751, 2304, 2535
DpnII GATC 7 cut(s) 9, 222, 232, 1009, 1749, 2302, 2533
DriI GACNNNNNGTC 3 cut(s) 127, 537, 1295
EaeI YGGCCR 3 cut(s) 144, 1769, 2488
Eam1104I CTCTTC 7 cut(s) 120, 182, 336, 450, 824, 2064, 2072
Eam1105I GACNNNNNGTC 3 cut(s) 127, 537, 1295
EarI CTCTTC 7 cut(s) 120, 182, 336, 450, 824, 2064, 2072
EciI GGCGGA 1 cut(s) 70
Eco130I CCWWGG 5 cut(s) 691, 1466, 1745, 1807, 2366
Eco147I AGGCCT 1 cut(s) 2656
Eco57I CTGAAG 2 cut(s) 1737, 2052
Eco88I CYCGRG 2 cut(s) 33, 1487
EcoRI GAATTC 1 cut(s) 2249
EcoRII CCWGG 2 cut(s) 994, 1285
EcoT14I CCWWGG 5 cut(s) 691, 1466, 1745, 1807, 2366
ErhI CCWWGG 5 cut(s) 691, 1466, 1745, 1807, 2366
Esp3I CGTCTC 1 cut(s) 12
FalI AAGNNNNNCTT 2 cut(s) 2025, 2057
FaqI GGGAC 1 cut(s) 2201
FauI CCCGC 1 cut(s) 2535
FauNDI CATATG 1 cut(s) 1939
FblI GTMKAC 2 cut(s) 131, 530
FokI GGATG 9 cut(s) 674, 740, 955, 1011, 1415, 1531, 1839, 2277, 2648
FspBI CTAG 2 cut(s) 785, 1152
GlaI GCGC 1 cut(s) 1551
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 7 cut(s) 146, 1652, 1771, 1921, 2490, 2629, 2656
HapII CCGG 4 cut(s) 1030, 1397, 2197, 2613
HgaI GACGC 2 cut(s) 155, 1971
HhaI GCGC 1 cut(s) 1552
Hin6I GCGC 1 cut(s) 1550
HinP1I GCGC 1 cut(s) 1550
HincII GTYRAC 4 cut(s) 132, 531, 2011, 2505
HindII GTYRAC 4 cut(s) 132, 531, 2011, 2505
HindIII AAGCTT 5 cut(s) 711, 1982, 2216, 2339, 2384
HinfI GANTC 9 cut(s) 128, 139, 280, 751, 808, 1036, 1439, 1970, 2136
HpaI GTTAAC 1 cut(s) 2011
HpaII CCGG 4 cut(s) 1030, 1397, 2197, 2613
Hpy166II GTNNAC 5 cut(s) 132, 531, 2011, 2420, 2505
Hpy188III TCNNGA 6 cut(s) 170, 197, 284, 755, 1952, 2648
Hpy8I GTNNAC 5 cut(s) 132, 531, 2011, 2420, 2505
Hpy99I CGWCG 1 cut(s) 171
HpyCH4III ACNGT 3 cut(s) 269, 1991, 2485
HpyCH4IV ACGT 2 cut(s) 1638, 1795
HpyF10VI GCNNNNNNNGC 8 cut(s) 58, 75, 714, 957, 1224, 2092, 2278, 2603
HpyF3I CTNAG 8 cut(s) 393, 474, 737, 873, 1271, 1585, 1623, 1950
HpySE526I ACGT 2 cut(s) 1638, 1795
HspAI GCGC 1 cut(s) 1550
KspAI GTTAAC 1 cut(s) 2011
Kzo9I GATC 7 cut(s) 9, 222, 232, 1009, 1749, 2302, 2533
LmnI GCTCC 3 cut(s) 513, 2092, 2326
Lsp1109I GCAGC 3 cut(s) 150, 1436, 2047
LweI GCATC 6 cut(s) 731, 989, 1993, 2152, 2383, 2584
MaeI CTAG 2 cut(s) 785, 1152
MaeII ACGT 2 cut(s) 1638, 1795
MaeIII GTNAC 2 cut(s) 1975, 2035
MalI GATC 7 cut(s) 11, 224, 234, 1011, 1751, 2304, 2535
MbiI CCGCTC 1 cut(s) 69
MboI GATC 7 cut(s) 9, 222, 232, 1009, 1749, 2302, 2533
MflI RGATCY 1 cut(s) 1749
MhlI GDGCHC 4 cut(s) 1239, 2088, 2182, 2331
MlsI TGGCCA 1 cut(s) 2490
MluNI TGGCCA 1 cut(s) 2490
MlyI GAGTC 3 cut(s) 133, 137, 2130
Mox20I TGGCCA 1 cut(s) 2490
MroXI GAANNNNTTC 1 cut(s) 1479
MscI TGGCCA 1 cut(s) 2490
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 2490
MspCI CTTAAG 2 cut(s) 1019, 2342
MspI CCGG 4 cut(s) 1030, 1397, 2197, 2613
MspR9I CCNGG 5 cut(s) 996, 1031, 1287, 1397, 2198
Mva1269I GAATGC 2 cut(s) 1218, 1479
MvaI CCWGG 2 cut(s) 996, 1287
MvnI CGCG 1 cut(s) 1965
MwoI GCNNNNNNNGC 8 cut(s) 58, 75, 714, 957, 1224, 2092, 2278, 2603
NciI CCSGG 3 cut(s) 1031, 1397, 2198
NcoI CCATGG 2 cut(s) 1807, 2366
NdeI CATATG 1 cut(s) 1939
NdeII GATC 7 cut(s) 9, 222, 232, 1009, 1749, 2302, 2533
NlaIV GGNNCC 3 cut(s) 1581, 1751, 1920
NmuCI GTSAC 2 cut(s) 1975, 2035
NspI RCATGY 3 cut(s) 482, 1726, 1863
NspV TTCGAA 1 cut(s) 1442
PagI TCATGA 1 cut(s) 2647
PaqCI CACCTGC 2 cut(s) 2156, 2272
PceI AGGCCT 1 cut(s) 2656
PctI GAATGC 2 cut(s) 1218, 1479
PdmI GAANNNNTTC 1 cut(s) 1479
PfeI GAWTC 6 cut(s) 280, 751, 808, 1036, 1439, 1970
PfoI TCCNGGA 2 cut(s) 994, 1285
PinAI ACCGGT 1 cut(s) 2612
PleI GAGTC 3 cut(s) 133, 136, 2130
PpsI GAGTC 3 cut(s) 133, 136, 2130
PshBI ATTAAT 1 cut(s) 837
Psp6I CCWGG 2 cut(s) 994, 1285
PspGI CCWGG 2 cut(s) 994, 1285
PspN4I GGNNCC 3 cut(s) 1581, 1751, 1920
PspPI GGNCC 1 cut(s) 1919
PsrI GAACNNNNNNTAC 2 cut(s) 2193, 2225
PstI CTGCAG 2 cut(s) 17, 2413
PsuI RGATCY 1 cut(s) 1749
RsaI GTAC 1 cut(s) 2202
RsaNI GTAC 1 cut(s) 2201
RseI CAYNNNNRTG 1 cut(s) 483
SalI GTCGAC 2 cut(s) 130, 529
Sau3AI GATC 7 cut(s) 9, 222, 232, 1009, 1749, 2302, 2533
Sau96I GGNCC 1 cut(s) 1919
SbfI CCTGCAGG 1 cut(s) 2413
SchI GAGTC 3 cut(s) 133, 137, 2130
ScrFI CCNGG 5 cut(s) 996, 1031, 1287, 1397, 2198
SdaI CCTGCAGG 1 cut(s) 2413
SduI GDGCHC 4 cut(s) 1239, 2088, 2182, 2331
SfaNI GCATC 6 cut(s) 731, 989, 1993, 2152, 2383, 2584
SfcI CTRYAG 3 cut(s) 13, 2064, 2409
SfuI TTCGAA 1 cut(s) 1442
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 4 cut(s) 1019, 1838, 2219, 2342
SmoI CTYRAG 4 cut(s) 1019, 1838, 2219, 2342
Sse8387I CCTGCAGG 1 cut(s) 2413
SseBI AGGCCT 1 cut(s) 2656
SspMI CTAG 2 cut(s) 785, 1152
StuI AGGCCT 1 cut(s) 2656
StyD4I CCNGG 5 cut(s) 994, 1029, 1285, 1395, 2196
StyI CCWWGG 5 cut(s) 691, 1466, 1745, 1807, 2366
TaaI ACNGT 3 cut(s) 269, 1991, 2485
TaiI ACGT 2 cut(s) 1641, 1798
TaqI TCGA 9 cut(s) 131, 235, 530, 754, 968, 975, 1110, 1442, 1680
TauI GCSGC 8 cut(s) 8, 55, 72, 75, 78, 99, 163, 1774
TfiI GAWTC 6 cut(s) 280, 751, 808, 1036, 1439, 1970
TscAI CASTG 5 cut(s) 797, 1786, 1994, 2093, 2270
TseFI GTSAC 2 cut(s) 1975, 2035
TseI GCWGC 3 cut(s) 163, 1424, 2060
Tsp45I GTSAC 2 cut(s) 1975, 2035
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 5 cut(s) 797, 1786, 1994, 2093, 2270
Vha464I CTTAAG 2 cut(s) 1019, 2342
VspI ATTAAT 1 cut(s) 837
XapI RAATTY 4 cut(s) 1345, 1697, 2119, 2249
XceI RCATGY 3 cut(s) 482, 1726, 1863
XcmI CCANNNNNNNNNTGG 1 cut(s) 1660
XmiI GTMKAC 2 cut(s) 131, 530
XmnI GAANNNNTTC 1 cut(s) 1479
XspI CTAG 2 cut(s) 785, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.