Prupe.5G015100_v2.0.a1

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000280
Physical Location & Seq
Reverse (-)
1652782 .. 1662392
9611 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G015100.4

Sequence Viewer

Length: 2940 bp
ATGGCGAGGAGAGGAAGAGGAAGAGGAAGAGGAAGAGGCAGAGGAAGAGGCAGAGGAAGAGGAAGAGGCAGAGGTAGAGGCGGAGGCGGAGGCAGAAACGGGTCAAAGCAAGAAGACCCAGAAATCCACAGAGACCAAGAAGTCCAGGAAACTCACGAGAATGGTGTCTCAGAAAACGGTAGCTTGCAAAAGGAGGAGACTTTGGGGAATCAAAGTGATGGGTCTAAAGGGGTTGCTGAGACTTTGAAGAAGAAGAAGCGTGGCAGGAAGAGTAAGAAAGATTTGGAGGCTGATAGAGTGGAAATCATAATGGGGAAGGAGGAGCATAGTTTGGAAAAACAAAATGGAGAGGAAGGGGAAGGTAAAGGGGTTGCCTTGTCTGAGAGGGAGAGCCGAGGAAGGAAGAGAAGCAGAGATTTGGGGAACTCTGATGAAAGTTTGAGAAAGTCGGCAGGTTATTCGCTTAGGCCTGTAAAAATTCCTCTAATGCAAGAAGAGCAAACAACAAATAAGCAATCTAAAGAATTTGTTGAGGAGCAATCCTTAATGTGCCATCAATGTCAGAGGAATGACAAGGGCAGGGTTGTTCGCTGCAAAAGTTGTAAGAGAAAACGATATTGCGTTCCTTGCATACAGAACTGGTATCCTCAGACATCAGAGGATGCCATTGCTGAGTCTTGTCCAGTATGCCGTGGAAATTGCAATTGCAAAGCATGCTTGCGCATAGATGTACCTGTGAAGAACTTGATCCTGGATTTTAAAATTGAGGAGGGTGAAAAAGTTGAGCACTCCAAATATTTGATTCATACTTTGCTTCCATTCTTGAAAAGAATTAATGATGAGCAAGTTATTGAGATGGAGATGGAGGCTAGGAGACAAGGTTTAACTCTTTTGGAGCTAAAGACAAAAAAGTCAGATGTAAAAGCTGATGAGCGTGTGTATTGCAACAACTGCAAAACTTCGATTTTTGATCTTCACAGAACCTGTCCTAGTTGTTCATATGACCTCTGCCTCAACTGTTGTCGGGAGATCCGAGATGGACGCTTGCAGGGAGGTGGGGAGGAAGTGATTATGGAATATGTCAGTCGGGGCCTACACTATTTGCATGGTGGAAAGGAAAAGGTGGAACTGCCTCCAGAAACTAGCCCTAAGTGTTCTGGAAGGTCAACATTTGAGTGGAAACCAAATGAAGATGGAAATATTCCTTGCCCTCCAAAGGACATGAATGGTTGTGGTGATGGTATTTTAGAATTGAGATGCATGTTTCCTGAAAATCACATCAGGGAGTTGGTAAAGAAAGCAGAAGAAATAGACGAAGCTTACAATCTTATGCGTTTAAGTGAAACTTTGGCAGAAAGGTGTTCATGTCTCAACTCTGTGGATGATGTTGGCTCAAGCAGCACTAAATCAAGGAAAGCAGCTTCTAGAGTTGCTTCTGATGATAACTATTTGTACTGTCCAAGGGCTGGAGATATCCAGCGTGATGATTTTAAGCATTTCCAGTCGCATTGGTTCAGGGGTGAGCCCGTAATTGTGAGTAATGTGCTTGAAACTACAAACGGTTTAAGCTGGGAACCATTGGTCATGTGGCGTGCTTGTCGTCAGATGAAACATATTAAGCATGATAGACTTTTGGATGTGAAGACCATTGACTGCTTGGATTGGTGTGAGGCGGATATCAATATACACCAATTTTTTACTGGATATTCAAAGGGCCGGTTTGATTGGGAAAATTGGCCTCAGATTCTGAAACTTAAGGATTGGCCGCCGTCTAATTTATTTGAGGAGCGCCTTCCTCGTCATGGTGCTGAGTTTATTTGTTGTTTGCCATTCAAGGAATATACCCATCCTCGCAGTGGTTGTCTGAACCTCGCTACCAAATTGCCTAAGGAGCCTAAGGATTATGTAAAGCCAGACATGGGGCCCAAGACATATATTGCCTACGGTTTTGCCCAGGAGCTGGGGCGTGGAGATTCTGTAACCAAGCTTCACTGTGATATGTCTGATGCGGTCAATGTTTTGACACATACTACTGAAGTGACCCTTACTCCTGAGCAACTTGCTACTATAGAAAAGTTGAAGAAAAAGCATATGGAGCAAGACCAAAGAGAATTTTTTGGGGATTGTCAGACTCAAGATGACTTTATGGATAGTGGTAATCCTGGCAGTGGATCGTGTTCCAGGGATGCAAATGATAAAGAATTTTGTCTTGAAGTTGGTAATAAAAAAAGTGGTACATTGGTTCAAGAGTTGGATAAATCAAATGTTGGGCATGATGGAAACTTTTCAAAGGGATCTGAGTCTGAAAAGAGTGTTTCAAAGGGATCCGAGTCTGAAAAGAGTGTAGAGGAAAAATTAGATCATGATGAAAGTGGTGAAAATAGTGAGCATTCAATAAATACTGGGAATAAGTTGGAAGGGTCAAATGAAGCAGAAGGTGGTGCTTTGTGGGACATTTTCCGGAGGCAGGATGTTCCTAAGCTGGAAGAATACCTCAGGAAGCACTCTAAGGAATTCAGGCACACACACTGTTGTCCATTGCAGCAGGTTATTCATCCCATACATGATCAGACCTTTTATCTGACTCTGGAGCATAAAAAGAAGCTCAAGGAAGAATATGGAATTGAACCATGGACGTTTGTCCAAAACCTTGGGGATGCTGTCTTTATTCCTGCGGGTTGTCCGCATCAAGTAAGAAACTTGAAGTCATGCATCAAAGTTGCAATGGACTTCGTTTCACCTGAAAATGTCAGCGAGTGCTTCCGCATGACAGAAGAGTTCCGAAAACTTCCACAAAATCATAGGGCTAAAGAGGACAAGTTAGAGGTCAAGAAAATGATTGTTCATGCTGTTAATGATTTGATGTCTTCAGATCCGAAAGCAAGTGAATTCTCCTGGAGTGCTGTTACTGACGTTTTCACAAATGTCAAAGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

980

Amino Acids

111.42

Weight (kDa)

6.72

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 140, 910
Acc16I TGCGCA 1 cut(s) 722
Acc36I ACCTGC 2 cut(s) 443, 2536
AccB7I CCANNNNNTGG 2 cut(s) 1466, 1960
AccIII TCCGGA 1 cut(s) 2460
AciI CCGC 8 cut(s) 81, 87, 1673, 1766, 2009, 2675, 2684, 2764
AclWI GGATC 7 cut(s) 742, 1024, 2179, 2302, 2319, 2332, 2867
AcoI YGGCCR 1 cut(s) 1763
AcsI RAATTY 6 cut(s) 477, 524, 2111, 2201, 2513, 2888
AcuI CTGAAG 2 cut(s) 2055, 2853
AfaI GTAC 3 cut(s) 732, 1454, 2236
AfiI CCNNNNNNNGG 8 cut(s) 1216, 1466, 1802, 1856, 1919, 1960, 2168, 2467
AflII CTTAAG 1 cut(s) 1754
AjnI CCWGG 6 cut(s) 144, 750, 1953, 2161, 2180, 2894
Alw21I GWGCWC 1 cut(s) 789
Alw26I GTCTC 6 cut(s) 126, 172, 191, 233, 868, 1373
AlwI GGATC 7 cut(s) 742, 1024, 2179, 2302, 2319, 2332, 2867
AlwNI CAGNNNCTG 3 cut(s) 984, 1747, 1960
Aor13HI TCCGGA 1 cut(s) 2460
AoxI GGCC 6 cut(s) 467, 1090, 1714, 1736, 1763, 1922
ApaI GGGCCC 1 cut(s) 1926
ApeKI GCWGC 4 cut(s) 591, 1398, 1418, 2542
ApoI RAATTY 6 cut(s) 477, 524, 2111, 2201, 2513, 2888
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 1 cut(s) 2284
AspLEI GCGC 2 cut(s) 723, 1791
AspS9I GGNCC 4 cut(s) 1090, 1714, 1922, 1923
AsuHPI GGTGA 5 cut(s) 785, 1247, 1532, 2387, 2730
AxyI CCTNAGG 3 cut(s) 1887, 1896, 2495
BaeGI GKGCMC 1 cut(s) 1926
BaeI ACNNNNGTAYC 2 cut(s) 2226, 2259
BamHI GGATCC 1 cut(s) 2324
BanII GRGCYC 2 cut(s) 1527, 1926
BarI GAAGNNNNNNTAC 2 cut(s) 1971, 2003
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 3 cut(s) 120, 1649, 2859
Bbv12I GWGCWC 1 cut(s) 789
BbvI GCAGC 4 cut(s) 578, 1410, 1430, 2554
BccI CCATC 9 cut(s) 212, 561, 850, 856, 1031, 1187, 1232, 1854, 2270
BceAI ACGGC 2 cut(s) 675, 1753
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
BciVI GTATCC 1 cut(s) 654
BclI TGATCA 1 cut(s) 2566
BcoDI GTCTC 6 cut(s) 126, 172, 191, 233, 868, 1373
BfaI CTAG 4 cut(s) 870, 990, 1143, 1425
BfmI CTRYAG 1 cut(s) 2067
BfoI RGCGCY 1 cut(s) 1792
BfrI CTTAAG 1 cut(s) 1754
BfuAI ACCTGC 2 cut(s) 443, 2536
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 5 cut(s) 592, 1399, 1419, 1766, 2543
BlsI GCNGC 5 cut(s) 593, 1400, 1420, 1767, 2544
Bme1390I CCNGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
BmgT120I GGNCC 4 cut(s) 1090, 1714, 1922, 1923
BmiI GGNNCC 6 cut(s) 1091, 1575, 1893, 1923, 1924, 2326
BmrFI CCNGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
BmrI ACTGGG 1 cut(s) 2412
BmsI GCATC 7 cut(s) 652, 1247, 1996, 2176, 2647, 2695, 2721
BmuI ACTGGG 1 cut(s) 2412
BoxI GACNNNNGTC 1 cut(s) 2639
BpiI GAAGAC 3 cut(s) 120, 1649, 2859
BpmI CTGGAG 4 cut(s) 1119, 1488, 2609, 2917
Bpu10I CCTNAGC 3 cut(s) 464, 2052, 2478
BpuEI CTTGAG 3 cut(s) 1378, 2118, 2591
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 7 cut(s) 394, 691, 1460, 1953, 2181, 2630, 2650
BsaWI WCCGGW 1 cut(s) 2460
BsaXI ACNNNNNCTCC 6 cut(s) 865, 895, 1962, 1992, 2032, 2062
Bsc4I CCNNNNNNNGG 8 cut(s) 1216, 1466, 1802, 1856, 1919, 1960, 2168, 2467
Bse118I RCCGGY 1 cut(s) 1716
Bse1I ACTGG 5 cut(s) 644, 683, 1501, 1705, 2407
Bse21I CCTNAGG 3 cut(s) 1887, 1896, 2495
Bse3DI GCAATG 3 cut(s) 666, 2537, 2730
BseAI TCCGGA 1 cut(s) 2460
BseBI CCWGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
BseDI CCNNGG 7 cut(s) 394, 691, 1460, 1953, 2181, 2630, 2650
BseGI GGATG 8 cut(s) 667, 1387, 1642, 1846, 2191, 2476, 2554, 2662
BseLI CCNNNNNNNGG 8 cut(s) 1216, 1466, 1802, 1856, 1919, 1960, 2168, 2467
BseMI GCAATG 3 cut(s) 666, 2537, 2730
BseNI ACTGG 5 cut(s) 644, 683, 1501, 1705, 2407
BseRI GAGGAG 6 cut(s) 22, 209, 335, 548, 782, 1799
BseSI GKGCMC 1 cut(s) 1926
BseXI GCAGC 4 cut(s) 578, 1410, 1430, 2554
BseYI CCCAGC 2 cut(s) 1569, 1960
BshFI GGCC 6 cut(s) 469, 1092, 1716, 1738, 1765, 1924
BsiHKAI GWGCWC 1 cut(s) 789
BsiSI CCGG 2 cut(s) 1717, 2461
BslFI GGGAC 1 cut(s) 2465
BslI CCNNNNNNNGG 8 cut(s) 1216, 1466, 1802, 1856, 1919, 1960, 2168, 2467
BsmAI GTCTC 6 cut(s) 126, 172, 191, 233, 868, 1373
BsmFI GGGAC 1 cut(s) 2465
BsmI GAATGC 1 cut(s) 2389
BsnI GGCC 6 cut(s) 469, 1092, 1716, 1738, 1765, 1924
Bso31I GGTCTC 1 cut(s) 126
Bsp120I GGGCCC 1 cut(s) 1922
Bsp1286I GDGCHC 3 cut(s) 789, 1527, 1926
Bsp13I TCCGGA 1 cut(s) 2460
Bsp143I GATC 9 cut(s) 747, 970, 1029, 2171, 2294, 2324, 2359, 2566, 2872
Bsp19I CCATGG 1 cut(s) 2630
BspACI CCGC 8 cut(s) 81, 87, 1673, 1766, 2009, 2675, 2684, 2764
BspANI GGCC 6 cut(s) 469, 1092, 1716, 1738, 1765, 1924
BspEI TCCGGA 1 cut(s) 2460
BspHI TCATGA 1 cut(s) 2362
BspLI GGNNCC 6 cut(s) 1091, 1575, 1893, 1923, 1924, 2326
BspMI ACCTGC 2 cut(s) 443, 2536
BspPI GGATC 7 cut(s) 742, 1024, 2179, 2302, 2319, 2332, 2867
BspQI GCTCTTC 1 cut(s) 489
BspTI CTTAAG 1 cut(s) 1754
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 3 cut(s) 666, 2537, 2730
BsrFI RCCGGY 1 cut(s) 1716
BsrI ACTGG 5 cut(s) 644, 683, 1501, 1705, 2407
BssAI RCCGGY 1 cut(s) 1716
BssECI CCNNGG 7 cut(s) 394, 691, 1460, 1953, 2181, 2630, 2650
BssMI GATC 9 cut(s) 747, 970, 1029, 2171, 2294, 2324, 2359, 2566, 2872
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 3 cut(s) 1460, 2630, 2650
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
Bst4CI ACNGT 7 cut(s) 179, 1019, 1457, 1562, 1946, 1994, 2531
BstAFI CTTAAG 1 cut(s) 1754
BstAPI GCANNNNNTGC 2 cut(s) 714, 951
BstC8I GCNNGC 5 cut(s) 185, 715, 719, 1046, 1593
BstDSI CCRYGG 2 cut(s) 691, 2630
BstF5I GGATG 8 cut(s) 667, 1387, 1642, 1846, 2191, 2476, 2554, 2662
BstH2I RGCGCY 1 cut(s) 1792
BstHHI GCGC 2 cut(s) 723, 1791
BstKTI GATC 9 cut(s) 750, 973, 1032, 2174, 2297, 2327, 2362, 2569, 2875
BstMAI GTCTC 6 cut(s) 126, 172, 191, 233, 868, 1373
BstMBI GATC 9 cut(s) 747, 970, 1029, 2171, 2294, 2324, 2359, 2566, 2872
BstMWI GCNNNNNNNGC 7 cut(s) 496, 627, 714, 951, 1398, 1891, 2095
BstNI CCWGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
BstNSI RCATGY 2 cut(s) 717, 1264
BstPAI GACNNNNGTC 1 cut(s) 2639
BstSCI CCNGG 6 cut(s) 144, 750, 1953, 2161, 2180, 2894
BstSFI CTRYAG 1 cut(s) 2067
BstSLI GKGCMC 1 cut(s) 1926
BstV1I GCAGC 4 cut(s) 578, 1410, 1430, 2554
BstV2I GAAGAC 3 cut(s) 120, 1649, 2859
BstX2I RGATCY 4 cut(s) 1029, 2294, 2324, 2872
BstXI CCANNNNNNTGG 1 cut(s) 2651
BstYI RGATCY 4 cut(s) 1029, 2294, 2324, 2872
Bsu36I CCTNAGG 3 cut(s) 1887, 1896, 2495
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 6 cut(s) 469, 1092, 1716, 1738, 1765, 1924
BtgI CCRYGG 2 cut(s) 691, 2630
BtsCI GGATG 8 cut(s) 667, 1387, 1642, 1846, 2191, 2476, 2554, 2662
BtsI GCAGTG 2 cut(s) 1861, 2173
BtsIMutI CAGTG 4 cut(s) 1861, 1990, 2173, 2527
BveI ACCTGC 2 cut(s) 443, 2536
Cac8I GCNNGC 5 cut(s) 185, 715, 719, 1046, 1593
CaiI CAGNNNCTG 3 cut(s) 984, 1747, 1960
CciI TCATGA 1 cut(s) 2362
CfoI GCGC 2 cut(s) 723, 1791
Cfr10I RCCGGY 1 cut(s) 1716
Cfr13I GGNCC 4 cut(s) 1090, 1714, 1922, 1923
CseI GACGC 1 cut(s) 1050
Csp6I GTAC 3 cut(s) 731, 1453, 2235
CviQI GTAC 3 cut(s) 731, 1453, 2235
DpnI GATC 9 cut(s) 749, 972, 1031, 2173, 2296, 2326, 2361, 2568, 2874
DpnII GATC 9 cut(s) 747, 970, 1029, 2171, 2294, 2324, 2359, 2566, 2872
DraI TTTAAA 1 cut(s) 760
DrdI GACNNNNNNGTC 2 cut(s) 140, 910
DseDI GACNNNNNNGTC 2 cut(s) 140, 910
EaeI YGGCCR 1 cut(s) 1763
EciI GGCGGA 3 cut(s) 96, 102, 1688
Eco130I CCWWGG 3 cut(s) 1460, 2630, 2650
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 1527, 1926
Eco31I GGTCTC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 1474, 1678
Eco57I CTGAAG 2 cut(s) 2055, 2853
Eco81I CCTNAGG 3 cut(s) 1887, 1896, 2495
EcoO109I RGGNCCY 2 cut(s) 1090, 1922
EcoRI GAATTC 2 cut(s) 2513, 2888
EcoRII CCWGG 6 cut(s) 144, 750, 1953, 2161, 2180, 2894
EcoRV GATATC 2 cut(s) 1474, 1678
EcoT14I CCWWGG 3 cut(s) 1460, 2630, 2650
EcoT22I ATGCAT 2 cut(s) 1262, 2714
EcoT38I GRGCYC 2 cut(s) 1527, 1926
ErhI CCWWGG 3 cut(s) 1460, 2630, 2650
FalI AAGNNNNNCTT 4 cut(s) 1330, 1362, 2028, 2060
FaqI GGGAC 1 cut(s) 2465
FauI CCCGC 1 cut(s) 2668
FauNDI CATATG 2 cut(s) 1000, 2091
FbaI TGATCA 1 cut(s) 2566
Fnu4HI GCNGC 5 cut(s) 592, 1399, 1419, 1766, 2543
FokI GGATG 8 cut(s) 674, 1394, 1649, 1833, 2198, 2483, 2541, 2669
FriOI GRGCYC 2 cut(s) 1527, 1926
Fsp4HI GCNGC 5 cut(s) 592, 1399, 1419, 1766, 2543
FspBI CTAG 4 cut(s) 870, 990, 1143, 1425
FspI TGCGCA 1 cut(s) 722
GlaI GCGC 2 cut(s) 722, 1790
GluI GCNGC 5 cut(s) 592, 1399, 1419, 1766, 2543
GsaI CCCAGC 2 cut(s) 1573, 1964
GsuI CTGGAG 4 cut(s) 1119, 1488, 2609, 2917
HaeII RGCGCY 1 cut(s) 1792
HaeIII GGCC 6 cut(s) 469, 1092, 1716, 1738, 1765, 1924
HapII CCGG 2 cut(s) 1717, 2461
HgaI GACGC 1 cut(s) 1050
HhaI GCGC 2 cut(s) 723, 1791
Hin6I GCGC 2 cut(s) 721, 1789
HinP1I GCGC 2 cut(s) 721, 1789
HincII GTYRAC 1 cut(s) 1167
HindII GTYRAC 1 cut(s) 1167
HindIII AAGCTT 2 cut(s) 1317, 1985
HinfI GANTC 9 cut(s) 208, 674, 802, 1744, 1973, 2131, 2300, 2330, 2584
HpaII CCGG 2 cut(s) 1717, 2461
HphI GGTGA 5 cut(s) 785, 1247, 1532, 2387, 2730
Hpy166II GTNNAC 1 cut(s) 1167
Hpy8I GTNNAC 1 cut(s) 1167
HpyAV CCTTC 8 cut(s) 310, 347, 353, 393, 1155, 1802, 2411, 2429
HpyCH4III ACNGT 7 cut(s) 179, 1019, 1457, 1562, 1946, 1994, 2531
HpyCH4IV ACGT 2 cut(s) 2636, 2913
HpyF10VI GCNNNNNNNGC 7 cut(s) 496, 627, 714, 951, 1398, 1891, 2095
HpySE526I ACGT 2 cut(s) 2636, 2913
HspAI GCGC 2 cut(s) 721, 1789
Kpn2I TCCGGA 1 cut(s) 2460
Ksp22I TGATCA 1 cut(s) 2566
Kzo9I GATC 9 cut(s) 747, 970, 1029, 2171, 2294, 2324, 2359, 2566, 2872
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 8 cut(s) 322, 535, 895, 1786, 1891, 1957, 2095, 2590
Lsp1109I GCAGC 4 cut(s) 578, 1410, 1430, 2554
LweI GCATC 7 cut(s) 652, 1247, 1996, 2176, 2647, 2695, 2721
MaeI CTAG 4 cut(s) 870, 990, 1143, 1425
MaeII ACGT 2 cut(s) 2636, 2913
MaeIII GTNAC 3 cut(s) 1978, 2038, 2905
MalI GATC 9 cut(s) 749, 972, 1031, 2173, 2296, 2326, 2361, 2568, 2874
MboI GATC 9 cut(s) 747, 970, 1029, 2171, 2294, 2324, 2359, 2566, 2872
MfeI CAATTG 1 cut(s) 703
MflI RGATCY 4 cut(s) 1029, 2294, 2324, 2872
MhlI GDGCHC 3 cut(s) 789, 1527, 1926
MlyI GAGTC 5 cut(s) 683, 2125, 2309, 2339, 2578
MmeI TCCRAC 2 cut(s) 2232, 2394
Mph1103I ATGCAT 2 cut(s) 1262, 2714
MroI TCCGGA 1 cut(s) 2460
MroXI GAANNNNTTC 1 cut(s) 2284
MslI CAYNNNNRTG 2 cut(s) 159, 1174
MspCI CTTAAG 1 cut(s) 1754
MspI CCGG 2 cut(s) 1717, 2461
MspR9I CCNGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
MunI CAATTG 1 cut(s) 703
Mva1269I GAATGC 1 cut(s) 2389
MvaI CCWGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
MwoI GCNNNNNNNGC 7 cut(s) 496, 627, 714, 951, 1398, 1891, 2095
NcoI CCATGG 1 cut(s) 2630
NdeI CATATG 2 cut(s) 1000, 2091
NdeII GATC 9 cut(s) 747, 970, 1029, 2171, 2294, 2324, 2359, 2566, 2872
NlaIV GGNNCC 6 cut(s) 1091, 1575, 1893, 1923, 1924, 2326
NmeAIII GCCGAG 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 2038
NsbI TGCGCA 1 cut(s) 722
NsiI ATGCAT 2 cut(s) 1262, 2714
NspI RCATGY 2 cut(s) 717, 1264
PaeI GCATGC 1 cut(s) 717
PagI TCATGA 1 cut(s) 2362
PceI AGGCCT 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 1030
PctI GAATGC 1 cut(s) 2389
PdmI GAANNNNTTC 1 cut(s) 2284
PfeI GAWTC 4 cut(s) 208, 802, 1744, 1973
PflMI CCANNNNNTGG 2 cut(s) 1466, 1960
PfoI TCCNGGA 3 cut(s) 144, 750, 2894
PkrI GCNGC 5 cut(s) 593, 1400, 1420, 1767, 2544
PleI GAGTC 5 cut(s) 682, 2125, 2308, 2338, 2578
PpsI GAGTC 5 cut(s) 682, 2125, 2308, 2338, 2578
PshAI GACNNNNGTC 1 cut(s) 2639
PshBI ATTAAT 1 cut(s) 834
Psp6I CCWGG 6 cut(s) 144, 750, 1953, 2161, 2180, 2894
PspFI CCCAGC 2 cut(s) 1569, 1960
PspGI CCWGG 6 cut(s) 144, 750, 1953, 2161, 2180, 2894
PspN4I GGNNCC 6 cut(s) 1091, 1575, 1893, 1923, 1924, 2326
PspOMI GGGCCC 1 cut(s) 1922
PspPI GGNCC 4 cut(s) 1090, 1714, 1922, 1923
PstNI CAGNNNCTG 3 cut(s) 984, 1747, 1960
PsuI RGATCY 4 cut(s) 1029, 2294, 2324, 2872
RsaI GTAC 3 cut(s) 732, 1454, 2236
RsaNI GTAC 3 cut(s) 731, 1453, 2235
RseI CAYNNNNRTG 2 cut(s) 159, 1174
SapI GCTCTTC 1 cut(s) 489
SatI GCNGC 5 cut(s) 592, 1399, 1419, 1766, 2543
Sau3AI GATC 9 cut(s) 747, 970, 1029, 2171, 2294, 2324, 2359, 2566, 2872
Sau96I GGNCC 4 cut(s) 1090, 1714, 1922, 1923
SchI GAGTC 5 cut(s) 683, 2125, 2309, 2339, 2578
ScrFI CCNGG 6 cut(s) 146, 752, 1955, 2163, 2182, 2896
SduI GDGCHC 3 cut(s) 789, 1527, 1926
SfaNI GCATC 7 cut(s) 652, 1247, 1996, 2176, 2647, 2695, 2721
SfcI CTRYAG 1 cut(s) 2067
SmiMI CAYNNNNRTG 2 cut(s) 159, 1174
SmlI CTYRAG 4 cut(s) 1393, 1754, 2133, 2606
SmoI CTYRAG 4 cut(s) 1393, 1754, 2133, 2606
SphI GCATGC 1 cut(s) 717
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 8 cut(s) 81, 87, 1673, 1766, 2009, 2675, 2684, 2764
SspI AATATT 2 cut(s) 797, 1201
SspMI CTAG 4 cut(s) 870, 990, 1143, 1425
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 6 cut(s) 144, 750, 1953, 2161, 2180, 2894
StyI CCWWGG 3 cut(s) 1460, 2630, 2650
TaaI ACNGT 7 cut(s) 179, 1019, 1457, 1562, 1946, 1994, 2531
TaiI ACGT 2 cut(s) 2639, 2916
TaqI TCGA 1 cut(s) 962
TatI WGTACW 1 cut(s) 1452
TauI GCSGC 1 cut(s) 1768
TfiI GAWTC 4 cut(s) 208, 802, 1744, 1973
TscAI CASTG 4 cut(s) 1861, 1997, 2173, 2534
TseFI GTSAC 1 cut(s) 2038
TseI GCWGC 4 cut(s) 591, 1398, 1418, 2542
Tsp45I GTSAC 1 cut(s) 2038
TspRI CASTG 4 cut(s) 1861, 1997, 2173, 2534
Van91I CCANNNNNTGG 2 cut(s) 1466, 1960
Vha464I CTTAAG 1 cut(s) 1754
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 6 cut(s) 477, 524, 2111, 2201, 2513, 2888
XbaI TCTAGA 1 cut(s) 1424
XceI RCATGY 2 cut(s) 717, 1264
XcmI CCANNNNNNNNNTGG 4 cut(s) 1584, 1654, 1697, 1853
XmnI GAANNNNTTC 1 cut(s) 2284
XspI CTAG 4 cut(s) 870, 990, 1143, 1425
Zsp2I ATGCAT 2 cut(s) 1262, 2714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.