Rorug07G0221000

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000280
Physical Location & Seq
Forward (+)
19887007 .. 19889371
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0221000.1

Sequence Viewer

Length: 1089 bp
ATGGAGACGAAGGTAGTGAGAAGCGAAGCGATAGAGAGCATATCGGACAGGCTATCGGCGTCGGAGGACCTCTACTTCCCTCGCGCCCTGCAATCCACCACCATCACCCCCTCTCAGCGCAAGGCCATTCTCCTCGACCTCCTCTCCCGCGACGCCGCCGTTTTCTTAGAACGTTATGGATCGAAATTAACATCTGAGGAGCTCCTGGAGTTTGATGCGCTGACAGATGACTATGAAGTCAGCTGGCATGTGAAGCATCTTAGAAGTTTATTGAGTCCGACATCGGATGAATTGAAATCAAGGGCAGTTCAAGTGAAGAACAGGAGGCGAGCCTACCTGAATAAGTTGATTTTTGATGGGCAGTATTTCTCGGAGGATTCAATGAGGGAGAGAGAGCCCTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGATCCGAGTGGTAGGAGCATGGCAAGGCCCGGGGAGCGGTGGTCAGATACTTTGTTGAGGAGGTCAGAGGAAGCGATTTTGGTAGCAAAGATTAGAGGGGAGCAACAGAGGTTGGGTGTTGCTGAGAGTGATTGGGTTGGCGGTGAGAGAATCCAGGAAGTAGAGGAACAGGAGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAATCTAACGAGGCTAATGGGGGCACACAATCATCAGAGATGCTGGTGGATCCTCCTAATGTGGCCAGTGGTGCTGAAACTGCAGACCATCCGGATGCGCCCAATGTTGCTCAAGCAACCACAGCAGGGCAGAGTGAGCAAGCAACTGTATCTGCAGAAGAGTTGCAAGATCTGATGGACCAGTTCACCTACATCATGCATGAGAAATTTTTGTTAGGAGAAGATCACGAGTACTTAGATTATTCAAAGATAGACAACGATGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTTGATGACATTATTGATGAGGACGAGACATTGGATGATCACCGGCAGAGAGAAGTGAACCATGACGCTGAAGAGAAGTACTTTGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

362

Amino Acids

41.98

Weight (kDa)

4.28

Isoelectric Point (pI)

74.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 107 - 334 5e-53 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 469
AccII CGCG 2 cut(s) 84, 150
AccIII TCCGGA 1 cut(s) 766
AciI CCGC 4 cut(s) 148, 156, 469, 573
AclI AACGTT 1 cut(s) 172
AclWI GGATC 5 cut(s) 187, 428, 441, 719, 732
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 2 cut(s) 1002, 1083
AcyI GRCGYC 2 cut(s) 59, 153
AfaI GTAC 3 cut(s) 908, 992, 1073
AfiI CCNNNNNNNGG 2 cut(s) 468, 801
AgsI TTSAA 4 cut(s) 295, 311, 381, 921
AjnI CCWGG 2 cut(s) 204, 585
AluBI AGCT 2 cut(s) 202, 243
AluI AGCT 2 cut(s) 202, 243
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 932, 1013
AlwI GGATC 5 cut(s) 187, 428, 441, 719, 732
Ama87I CYCGRG 1 cut(s) 461
Aor13HI TCCGGA 1 cut(s) 766
AoxI GGCC 3 cut(s) 123, 458, 738
ApoI RAATTY 1 cut(s) 881
AspLEI GCGC 4 cut(s) 86, 120, 220, 775
AspS9I GGNCC 3 cut(s) 67, 459, 853
AsuC2I CCSGG 2 cut(s) 462, 463
AsuHPI GGTGA 4 cut(s) 97, 587, 853, 1025
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 2 cut(s) 67, 853
BaeGI GKGCMC 1 cut(s) 701
BalI TGGCCA 1 cut(s) 740
BamHI GGATCC 2 cut(s) 433, 724
BanII GRGCYC 2 cut(s) 204, 399
BauI CACGAG 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 4 cut(s) 110, 350, 771, 844
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 206, 587
BclI TGATCA 2 cut(s) 949, 1030
BcnI CCSGG 2 cut(s) 462, 463
BcoDI GTCTC 2 cut(s) 932, 1013
BfmI CTRYAG 2 cut(s) 756, 828
BglII AGATCT 1 cut(s) 844
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 3 cut(s) 908, 992, 1073
Bme1390I CCNGG 4 cut(s) 206, 462, 463, 587
Bme18I GGWCC 2 cut(s) 67, 853
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 3 cut(s) 67, 459, 853
BmiI GGNNCC 2 cut(s) 435, 726
BmrFI CCNGG 4 cut(s) 206, 462, 463, 587
BmsI GCATC 5 cut(s) 205, 265, 415, 705, 760
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 771
BpuMI CCSGG 2 cut(s) 462, 463
BsaHI GRCGYC 2 cut(s) 59, 153
BsaJI CCNNGG 2 cut(s) 461, 462
BsaWI WCCGGW 1 cut(s) 766
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 801
Bse118I RCCGGY 1 cut(s) 1035
Bse1I ACTGG 3 cut(s) 741, 856, 959
BseAI TCCGGA 1 cut(s) 766
BseBI CCWGG 2 cut(s) 206, 587
BseDI CCNNGG 2 cut(s) 461, 462
BseGI GGATG 5 cut(s) 292, 763, 775, 952, 1033
BseLI CCNNNNNNNGG 2 cut(s) 468, 801
BseMII CTCAG 3 cut(s) 128, 186, 546
BseNI ACTGG 3 cut(s) 741, 856, 959
BseSI GKGCMC 1 cut(s) 701
Bsh1236I CGCG 2 cut(s) 84, 150
BshFI GGCC 3 cut(s) 125, 460, 740
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 3 cut(s) 462, 767, 1036
BslI CCNNNNNNNGG 2 cut(s) 468, 801
BsmAI GTCTC 2 cut(s) 932, 1013
BsnI GGCC 3 cut(s) 125, 460, 740
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 3 cut(s) 204, 399, 701
Bsp13I TCCGGA 1 cut(s) 766
Bsp143I GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
BspACI CCGC 4 cut(s) 148, 156, 469, 573
BspANI GGCC 3 cut(s) 125, 460, 740
BspCNI CTCAG 3 cut(s) 127, 187, 547
BspEI TCCGGA 1 cut(s) 766
BspFNI CGCG 2 cut(s) 84, 150
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 435, 726
BspMAI CTGCAG 2 cut(s) 760, 832
BspPI GGATC 5 cut(s) 187, 428, 441, 719, 732
BsrBI CCGCTC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 1035
BsrI ACTGG 3 cut(s) 741, 856, 959
BssAI RCCGGY 1 cut(s) 1035
BssECI CCNNGG 2 cut(s) 461, 462
BssMI GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
BssNI GRCGYC 2 cut(s) 59, 153
BssSI CACGAG 1 cut(s) 902
Bst2BI CACGAG 1 cut(s) 902
Bst2UI CCWGG 2 cut(s) 206, 587
Bst4CI ACNGT 1 cut(s) 823
Bst6I CTCTTC 9 cut(s) 612, 621, 627, 633, 639, 651, 828, 978, 1059
BstACI GRCGYC 2 cut(s) 59, 153
BstC8I GCNNGC 3 cut(s) 245, 330, 816
BstDEI CTNAG 6 cut(s) 114, 166, 195, 260, 555, 910
BstF5I GGATG 5 cut(s) 292, 763, 775, 952, 1033
BstFNI CGCG 2 cut(s) 84, 150
BstHHI GCGC 4 cut(s) 86, 120, 220, 775
BstKTI GATC 7 cut(s) 182, 436, 727, 847, 901, 952, 1033
BstMAI GTCTC 2 cut(s) 932, 1013
BstMBI GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
BstMWI GCNNNNNNNGC 7 cut(s) 253, 403, 466, 746, 755, 797, 811
BstNI CCWGG 2 cut(s) 206, 587
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 204, 460, 461, 585
BstSFI CTRYAG 2 cut(s) 756, 828
BstSLI GKGCMC 1 cut(s) 701
BstUI CGCG 2 cut(s) 84, 150
BstX2I RGATCY 3 cut(s) 433, 724, 844
BstYI RGATCY 3 cut(s) 433, 724, 844
BsuRI GGCC 3 cut(s) 125, 460, 740
BtsCI GGATG 5 cut(s) 292, 763, 775, 952, 1033
BtsIMutI CAGTG 2 cut(s) 748, 952
Cac8I GCNNGC 3 cut(s) 245, 330, 816
CciI TCATGA 1 cut(s) 409
CfoI GCGC 4 cut(s) 86, 120, 220, 775
Cfr10I RCCGGY 1 cut(s) 1035
Cfr13I GGNCC 3 cut(s) 67, 459, 853
Cfr9I CCCGGG 1 cut(s) 461
CseI GACGC 4 cut(s) 48, 161, 986, 1067
Csp6I GTAC 3 cut(s) 907, 991, 1072
CviAII CATG 7 cut(s) 248, 410, 451, 871, 875, 974, 1055
CviQI GTAC 3 cut(s) 907, 991, 1072
DdeI CTNAG 6 cut(s) 114, 166, 195, 260, 555, 910
DpnI GATC 7 cut(s) 181, 435, 726, 846, 900, 951, 1032
DpnII GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 9 cut(s) 612, 621, 627, 633, 639, 651, 828, 978, 1059
EarI CTCTTC 9 cut(s) 612, 621, 627, 633, 639, 651, 828, 978, 1059
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 204, 399
Eco47I GGWCC 2 cut(s) 67, 853
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 1002, 1083
Eco88I CYCGRG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 204, 585
EcoT22I ATGCAT 1 cut(s) 876
EcoT38I GRGCYC 2 cut(s) 204, 399
FaeI CATG 7 cut(s) 251, 413, 454, 874, 878, 977, 1058
FatI CATG 7 cut(s) 247, 409, 450, 870, 874, 973, 1054
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 2 cut(s) 949, 1030
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 5 cut(s) 299, 750, 782, 959, 1040
FriOI GRGCYC 2 cut(s) 204, 399
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 4 cut(s) 85, 119, 219, 774
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 3 cut(s) 125, 460, 740
HapII CCGG 3 cut(s) 462, 767, 1036
HgaI GACGC 4 cut(s) 48, 161, 986, 1067
HhaI GCGC 4 cut(s) 86, 120, 220, 775
Hin1I GRCGYC 2 cut(s) 59, 153
Hin1II CATG 7 cut(s) 251, 413, 454, 874, 878, 977, 1058
Hin6I GCGC 4 cut(s) 84, 118, 218, 773
HinP1I GCGC 4 cut(s) 84, 118, 218, 773
HinfI GANTC 4 cut(s) 274, 377, 582, 677
HpaII CCGG 3 cut(s) 462, 767, 1036
HphI GGTGA 4 cut(s) 97, 587, 853, 1025
Hpy166II GTNNAC 2 cut(s) 861, 1051
Hpy188III TCNNGA 4 cut(s) 410, 431, 767, 902
Hpy8I GTNNAC 2 cut(s) 861, 1051
Hpy99I CGWCG 2 cut(s) 64, 155
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 823
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 6 cut(s) 91, 406, 758, 830, 841, 874
HpyF10VI GCNNNNNNNGC 7 cut(s) 253, 403, 466, 746, 755, 797, 811
HpyF3I CTNAG 6 cut(s) 114, 166, 195, 260, 555, 910
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 2 cut(s) 59, 153
Hsp92II CATG 7 cut(s) 251, 413, 454, 874, 878, 977, 1058
HspAI GCGC 4 cut(s) 84, 118, 218, 773
Kpn2I TCCGGA 1 cut(s) 766
Ksp22I TGATCA 2 cut(s) 949, 1030
Kzo9I GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
LmnI GCTCC 5 cut(s) 199, 207, 447, 466, 532
LweI GCATC 5 cut(s) 205, 265, 415, 705, 760
MaeII ACGT 1 cut(s) 172
MalI GATC 7 cut(s) 181, 435, 726, 846, 900, 951, 1032
MbiI CCGCTC 1 cut(s) 469
MboI GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
MflI RGATCY 3 cut(s) 433, 724, 844
MhlI GDGCHC 3 cut(s) 204, 399, 701
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 3 cut(s) 185, 290, 881
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 42, 302
Mox20I TGGCCA 1 cut(s) 740
Mph1103I ATGCAT 1 cut(s) 876
MroI TCCGGA 1 cut(s) 766
MscI TGGCCA 1 cut(s) 740
MseI TTAA 2 cut(s) 188, 1087
MslI CAYNNNNRTG 2 cut(s) 414, 768
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 3 cut(s) 462, 767, 1036
MspR9I CCNGG 4 cut(s) 206, 462, 463, 587
MvaI CCWGG 2 cut(s) 206, 587
MvnI CGCG 2 cut(s) 84, 150
MwoI GCNNNNNNNGC 7 cut(s) 253, 403, 466, 746, 755, 797, 811
NciI CCSGG 2 cut(s) 462, 463
NdeII GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
NlaIII CATG 7 cut(s) 251, 413, 454, 874, 878, 977, 1058
NlaIV GGNNCC 2 cut(s) 435, 726
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 1 cut(s) 251
PagI TCATGA 1 cut(s) 409
PfeI GAWTC 3 cut(s) 377, 582, 677
PfoI TCCNGGA 2 cut(s) 204, 585
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 204, 585
PspGI CCWGG 2 cut(s) 204, 585
PspN4I GGNNCC 2 cut(s) 435, 726
PspPI GGNCC 3 cut(s) 67, 459, 853
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 2 cut(s) 760, 832
PsuI RGATCY 3 cut(s) 433, 724, 844
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 3 cut(s) 908, 992, 1073
RsaNI GTAC 3 cut(s) 907, 991, 1072
RseI CAYNNNNRTG 2 cut(s) 414, 768
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 188, 1087
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
Sau96I GGNCC 3 cut(s) 67, 459, 853
ScaI AGTACT 3 cut(s) 908, 992, 1073
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 4 cut(s) 206, 462, 463, 587
SduI GDGCHC 3 cut(s) 204, 399, 701
SfaNI GCATC 5 cut(s) 205, 265, 415, 705, 760
SfcI CTRYAG 2 cut(s) 756, 828
SinI GGWCC 2 cut(s) 67, 853
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 414, 768
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 3 cut(s) 185, 290, 881
SsiI CCGC 4 cut(s) 148, 156, 469, 573
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 4 cut(s) 204, 460, 461, 585
TaaI ACNGT 1 cut(s) 823
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 135, 182
TasI AATT 3 cut(s) 185, 290, 881
TatI WGTACW 3 cut(s) 906, 990, 1071
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 3 cut(s) 377, 582, 677
Tru1I TTAA 2 cut(s) 188, 1087
Tru9I TTAA 2 cut(s) 188, 1087
TscAI CASTG 2 cut(s) 748, 959
TspDTI ATGAA 2 cut(s) 249, 303
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 2 cut(s) 748, 959
VpaK11BI GGWCC 2 cut(s) 67, 853
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 251
XmaI CCCGGG 1 cut(s) 461
ZrmI AGTACT 3 cut(s) 908, 992, 1073
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.