RLG00000028800

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000280
Physical Location & Seq
Forward (+)
28175190 .. 28182921
7732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028800

Sequence Viewer

Length: 2916 bp
ATGTCCCATCAGTGTCAGAGGAATGATAGGGCCAGAGTTGTTAACTGCACAAGTTGTAAGCGGAAGCGATTTTGTGTATCATGCATTCAGAATTGGTATCCCCGGATGTCAGAGGAGGCTATTGCTGACGCTTGTCCTGTATGCCTTGGAAATTGCAATTGCAAAGCGTGCTTGCATTTAGATGAAACTAATCATGTGAGCTTGTCCTTATCTGCTCTATCATCTCTTGGATTTTGCTCTTTGTTTGACGACAACTGCAATACATCTATTATTGATTTCCACAGAAGCTGTCCTATATGTTCATATGACCTTTGTCTTATCTGCTGCCGGGAGATTCGAGATGGAAACCTGCAAGGAAGTCTAGACTATTTACATGGTGGAAAGGGCAACTTAATCAAAAAGCCTTCTGAAACTAAACTCAAGTGTCCTGTAAGGTCAACATCTAAGTGGAAAGTAAGCAAAGATCGAAGTATTTTTTGCCCCTCAAAAGACATGGATGGCTGTGGTTGTAGTGTTCTAGAACTGAGATGCATATTATCTGAAAACCACATCAGGGAGTTGGTAGAAAAAGCAGAAGAAATTGCAGAAACTAAAAAACTGATGTATGCAGCTGGACCTTCTGCACAGAAGTTTTCATGGTTCAACTCTGCTGGTGGTGCTGACTCAAGAAGCAATGAATTGATGAAAGCAGCTTCTCGAGAGGATTCGGAGGACAACTACTTGTACAGTCCAAGGGCTAGAAATATCCAACATGAAGACTTAAAGCATTTTCGCTGTCATTGGATCCAGGGTGAGCCTGTGATTGTAGGGAATGTGCTTGAAACTGCAACAGGTTTGAGCTGGGAACCATTTGTCATGTGGCGTGCTTGTCGTCAGATGAGAAATACCGGGCATGATAGACATGTGGAATTTCAGGCCATCGATTGCTTGGATTGTATCCACCAATTTTTTACTGGATATTTGGAGGGCCAGTTTGATGGGAAAATGTGGCCTCGTATTCTGAAACTCAACGATCGGTCCCTTGATGATTATTTGGAGAAGCGCCTTCCTCGTCATTGTGCTGAGTTTATTTGTTGCTTGCCATTTAAGGAATATACCCATCCTCGCAGTGGCCTCCTGAACCTTGCTGTAAAATTGCCTATGGAGTGTGTAAAGCCAGACATGGGGCCAAAAATGGATATTGCTTATGGTGTGTCCCAGGAGCTTGGACGTGGAGATTCAGTAACTAAGCTTCACTGTGATTCATGTGATGTGGTGAATGTTTTGGCACATACTGCTGAAGTGACGATTACTGCTGAGCAACTTTGTACTATAGAAGAGTTGAAAAAAGAGCACATTGAACAAGACCGAAGGGAAATGTTTGAAAATTATGAGACTGTGGATGACAATGTTGATCATACGGAGTCTGGTAGTGGGTCTTGTGTCAGGACTGCAAAGGGTAAACAATGTTGTTCTCAAGTTAAGAATCAAAACAGGGTTGCAACTTTTCAAGAAAAGACTAAAGCAGCTGTTCAAACTGATAGTTGGAATGGTGGAAATTTTTTGAAGGAATCCATGTCTGCAAAGAATGCAGAGGGAGGTGCTTTATGGGACATTTTTCGAAGACAGGATGTTCCTAAGCTGCAGGAATATCTATGGAAACACTACAAGGAATTCAGGCACACCTACTGTTGTCCATTGCAGCAGGTTACTCATCCCATACATGATCAGACTTTTTATCTGACATTAGAGCACAAGAGGAAGCTGAAGGAAGAATATGGAATTGAACCATGGACATTTATCCAGAAACTTGGAGATGCTGTCTTTATTCCTGCAGGATGTCCACACCAAGTTAGAAATTTGAAGGGCTTAATCCTGCTCCACTGGAAACAGGTGAAGAAAATTATTGTTCATGCTGTACATGAGGCTGTGGAGATTTTGGATCAGAATGTGAGGTTATGTAGTGCTAAAAATTTCAGGGGAGAGAAGCCTTCACAGCCCCCTGTTAATATATGTAAGTGTAACATTGCAAACAAATCGAGAGAGAAAGTAGCTAGGGGACGACCACTAGAAGGAAGGGCAGAATTGAAAGAGGTTCAAATTCTTGAGGAGCAGGCTTCACAATTATCACAGCCTATACAGCCCACTATTGATGTTGGTAGATTTGGAAGTACACGGAGGGAGGAAAAAGATGGAGGGCAACCACAAGAAGCAAGTAGAGTAGATGAAGAGGTCCAAATTCTTAAGGGGCAGCCTTCACAGTCAGCACAACATGTACAGCCCACTGCTTATGTTGATAGCAAGCATACAATGAGAAAGGAAACAGAGGGAGGGGTACTGCAAGAAACACATGGAGAAGTTGAAGACGTCCAGATTCTTGAGAAGCAGCCTTGGCAATCATCACAAACTGTACAAGCAACTCTTCATGCTGGTAGCATTGAACATGCATCTAGAGAGGAAAAAGCTGGATGGCGACCACAAACTTGTGGAGAAGATGAAGAAGTCCAAATTCTTGAGGAGCAGCATTGGCAATCATCACAATCTGTACAAGCAACTCTTCACATTGGTAGCATTGGACATGCACTGAGAGAGGAAAACGTGGGAGAACGACAGCATGAAGGAAAGGGAGAACAGGAAGAGATCCGAAATCTTGGTGAGAAGCCTTCAAAGTTATCACAACCTGAACCTGTCCAGCCCACTGTTGATGTTGATAAAGCGGTGCAGCATCTGGATGAGCTCGTGGAGCTCCTTAGACATTTTGAACAGAGTAGGATGCCGATGGGAGGGAGAGATGGAAGAATCAGTTCTCAATTCCAGCTTTTATGCTCGGAGTTCTTGACTTTATCTTTGCATCTTGGTTATGCACCTAATGATACCAAACCTCACACTACACCATCTGCTCAGCCACTACATGATCCTCCAGTTGTAGATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

972

Amino Acids

110.11

Weight (kDa)

6.2

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 528 - 615 4.9e-10 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2349
Acc36I ACCTGC 2 cut(s) 357, 1675
AciI CCGC 2 cut(s) 61, 2696
AclWI GGATC 5 cut(s) 778, 791, 1929, 2614, 2888
AcsI RAATTY 8 cut(s) 908, 1537, 1652, 1837, 1951, 2079, 2217, 2487
AcuI CTGAAG 2 cut(s) 1299, 1766
AcyI GRCGYC 1 cut(s) 2346
AfaI GTAC 8 cut(s) 725, 1309, 1899, 2152, 2256, 2316, 2391, 2526
AfiI CCNNNNNNNGG 5 cut(s) 553, 1109, 1163, 2051, 2762
AflII CTTAAG 1 cut(s) 2222
AflIII ACRYGT 2 cut(s) 901, 2251
AjiI CACGTC 1 cut(s) 1211
AjnI CCWGG 2 cut(s) 786, 1197
Alw21I GWGCWC 4 cut(s) 1335, 1734, 2718, 2727
Alw26I GTCTC 1 cut(s) 1367
AlwI GGATC 5 cut(s) 778, 791, 1929, 2614, 2888
AlwNI CAGNNNCTG 2 cut(s) 288, 2707
Ama87I CYCGRG 1 cut(s) 696
AoxI GGCC 6 cut(s) 30, 915, 967, 989, 1111, 1166
ApoI RAATTY 8 cut(s) 908, 1537, 1652, 1837, 1951, 2079, 2217, 2487
ArsI GACNNNNNNTTYG 2 cut(s) 2809, 2841
Asp700I GAANNNNTTC 1 cut(s) 2782
AspLEI GCGC 1 cut(s) 1044
AspS9I GGNCC 6 cut(s) 30, 614, 967, 1017, 1166, 2212
AsuC2I CCSGG 3 cut(s) 103, 329, 889
AsuHPI GGTGA 4 cut(s) 803, 1267, 1885, 2645
AsuII TTCGAA 1 cut(s) 1600
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 3 cut(s) 614, 1017, 2212
BamHI GGATCC 1 cut(s) 783
BanII GRGCYC 2 cut(s) 2718, 2727
BarI GAAGNNNNNNTAC 2 cut(s) 1215, 1247
BauI CACGAG 1 cut(s) 2717
BbsI GAAGAC 3 cut(s) 762, 1609, 2349
Bbv12I GWGCWC 4 cut(s) 1335, 1734, 2718, 2727
BcgI CGANNNNNNTGC 2 cut(s) 1998, 2032
BciT130I CCWGG 2 cut(s) 788, 1199
BciVI GTATCC 2 cut(s) 108, 947
BclI TGATCA 2 cut(s) 1393, 1705
BcnI CCSGG 3 cut(s) 103, 329, 889
BcoDI GTCTC 1 cut(s) 1367
BfaI CTAG 6 cut(s) 362, 518, 738, 2034, 2048, 2430
BfmI CTRYAG 3 cut(s) 1311, 1622, 1812
BfoI RGCGCY 1 cut(s) 1045
BfrI CTTAAG 1 cut(s) 2222
BfuAI ACCTGC 2 cut(s) 357, 1675
BfuI GTATCC 2 cut(s) 108, 947
BglII AGATCT 1 cut(s) 2908
BlpI GCTNAGC 2 cut(s) 1296, 2880
Bme1390I CCNGG 5 cut(s) 103, 329, 788, 889, 1199
Bme18I GGWCC 3 cut(s) 614, 1017, 2212
BmeT110I CYCGRG 1 cut(s) 696
BmgBI CACGTC 1 cut(s) 1211
BmgT120I GGNCC 6 cut(s) 30, 614, 967, 1017, 1166, 2212
BmiI GGNNCC 4 cut(s) 785, 846, 1019, 1167
BmrFI CCNGG 5 cut(s) 103, 329, 788, 889, 1199
BmsI GCATC 6 cut(s) 518, 1786, 2435, 2713, 2742, 2839
BoxI GACNNNNGTC 2 cut(s) 132, 312
BpiI GAAGAC 3 cut(s) 762, 1609, 2349
BpmI CTGGAG 1 cut(s) 2883
Bpu10I CCTNAGC 1 cut(s) 1617
Bpu1102I GCTNAGC 2 cut(s) 1296, 2880
Bpu14I TTCGAA 1 cut(s) 1600
BpuEI CTTGAG 6 cut(s) 404, 649, 1440, 2105, 2378, 2513
BpuMI CCSGG 3 cut(s) 103, 329, 889
Bsa29I ATCGAT 1 cut(s) 921
BsaHI GRCGYC 1 cut(s) 2346
BsaJI CCNNGG 7 cut(s) 101, 145, 731, 787, 1197, 1769, 2369
BsaXI ACNNNNNCTCC 6 cut(s) 956, 986, 1206, 1236, 1785, 1815
Bsc4I CCNNNNNNNGG 5 cut(s) 553, 1109, 1163, 2051, 2762
Bse1I ACTGG 4 cut(s) 958, 970, 1868, 2900
Bse3DI GCAATG 3 cut(s) 679, 1676, 2004
BseBI CCWGG 2 cut(s) 788, 1199
BseCI ATCGAT 1 cut(s) 921
BseDI CCNNGG 7 cut(s) 101, 145, 731, 787, 1197, 1769, 2369
BseLI CCNNNNNNNGG 5 cut(s) 553, 1109, 1163, 2051, 2762
BseMI GCAATG 3 cut(s) 679, 1676, 2004
BseMII CTCAG 5 cut(s) 515, 1053, 1287, 2555, 2894
BseNI ACTGG 4 cut(s) 958, 970, 1868, 2900
BseRI GAGGAG 3 cut(s) 128, 2102, 2510
BseYI CCCAGC 1 cut(s) 840
BsgI GTGCAG 3 cut(s) 31, 606, 2720
Bsh1285I CGRYCG 1 cut(s) 1015
BshFI GGCC 6 cut(s) 32, 917, 969, 991, 1113, 1168
BshVI ATCGAT 1 cut(s) 921
BsiEI CGRYCG 1 cut(s) 1015
BsiHKAI GWGCWC 4 cut(s) 1335, 1734, 2718, 2727
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 3 cut(s) 103, 328, 888
BslFI GGGAC 4 cut(s) 1003, 1180, 1604, 2052
BslI CCNNNNNNNGG 5 cut(s) 553, 1109, 1163, 2051, 2762
BsmAI GTCTC 1 cut(s) 1367
BsmFI GGGAC 4 cut(s) 1003, 1180, 1604, 2052
BsmI GAATGC 2 cut(s) 84, 1573
BsnI GGCC 6 cut(s) 32, 917, 969, 991, 1113, 1168
BsoBI CYCGRG 1 cut(s) 696
Bsp119I TTCGAA 1 cut(s) 1600
Bsp1286I GDGCHC 4 cut(s) 1335, 1734, 2718, 2727
Bsp1407I TGTACA 5 cut(s) 723, 1897, 2254, 2389, 2524
Bsp143I GATC 9 cut(s) 463, 783, 1012, 1393, 1705, 1921, 2619, 2893, 2908
Bsp1720I GCTNAGC 2 cut(s) 1296, 2880
Bsp19I CCATGG 1 cut(s) 1769
BspACI CCGC 2 cut(s) 61, 2696
BspANI GGCC 6 cut(s) 32, 917, 969, 991, 1113, 1168
BspCNI CTCAG 5 cut(s) 516, 1054, 1288, 2556, 2893
BspDI ATCGAT 1 cut(s) 921
BspLI GGNNCC 4 cut(s) 785, 846, 1019, 1167
BspMAI CTGCAG 2 cut(s) 1626, 1816
BspMI ACCTGC 2 cut(s) 357, 1675
BspPI GGATC 5 cut(s) 778, 791, 1929, 2614, 2888
BspT104I TTCGAA 1 cut(s) 1600
BspTI CTTAAG 1 cut(s) 2222
BsrDI GCAATG 3 cut(s) 679, 1676, 2004
BsrGI TGTACA 5 cut(s) 723, 1897, 2254, 2389, 2524
BsrI ACTGG 4 cut(s) 958, 970, 1868, 2900
BssECI CCNNGG 7 cut(s) 101, 145, 731, 787, 1197, 1769, 2369
BssMI GATC 9 cut(s) 463, 783, 1012, 1393, 1705, 1921, 2619, 2893, 2908
BssNI GRCGYC 1 cut(s) 2346
BssSI CACGAG 1 cut(s) 2717
BssT1I CCWWGG 4 cut(s) 145, 731, 1769, 2369
Bst2BI CACGAG 1 cut(s) 2717
Bst2UI CCWGG 2 cut(s) 788, 1199
Bst4CI ACNGT 7 cut(s) 728, 1238, 1378, 1670, 2241, 2389, 2680
Bst6I CTCTTC 5 cut(s) 1311, 2202, 2406, 2541, 2610
BstACI GRCGYC 1 cut(s) 2346
BstAFI CTTAAG 1 cut(s) 2222
BstAPI GCANNNNNTGC 3 cut(s) 168, 1274, 1568
BstAUI TGTACA 5 cut(s) 723, 1897, 2254, 2389, 2524
BstBI TTCGAA 1 cut(s) 1600
BstC8I GCNNGC 6 cut(s) 169, 173, 864, 1079, 2094, 2282
BstDEI CTNAG 9 cut(s) 444, 524, 1062, 1227, 1296, 1617, 2564, 2729, 2880
BstDSI CCRYGG 1 cut(s) 1769
BstH2I RGCGCY 1 cut(s) 1045
BstHHI GCGC 1 cut(s) 1044
BstKTI GATC 9 cut(s) 466, 786, 1015, 1396, 1708, 1924, 2622, 2896, 2911
BstMAI GTCTC 1 cut(s) 1367
BstMBI GATC 9 cut(s) 463, 783, 1012, 1393, 1705, 1921, 2619, 2893, 2908
BstMCI CGRYCG 1 cut(s) 1015
BstMWI GCNNNNNNNGC 9 cut(s) 168, 656, 1274, 1568, 1975, 2119, 2371, 2506, 2722
BstNI CCWGG 2 cut(s) 788, 1199
BstNSI RCATGY 4 cut(s) 905, 2255, 2426, 2561
BstPAI GACNNNNGTC 2 cut(s) 132, 312
BstSCI CCNGG 5 cut(s) 101, 327, 786, 887, 1197
BstSFI CTRYAG 3 cut(s) 1311, 1622, 1812
BstV2I GAAGAC 3 cut(s) 762, 1609, 2349
BstX2I RGATCY 3 cut(s) 783, 2619, 2908
BstXI CCANNNNNNTGG 3 cut(s) 977, 1205, 1790
BstYI RGATCY 3 cut(s) 783, 2619, 2908
Bsu15I ATCGAT 1 cut(s) 921
BsuI GTATCC 2 cut(s) 108, 947
BsuRI GGCC 6 cut(s) 32, 917, 969, 991, 1113, 1168
BsuTUI ATCGAT 1 cut(s) 921
BtgI CCRYGG 1 cut(s) 1769
BtrI CACGTC 1 cut(s) 1211
BtsI GCAGTG 2 cut(s) 1114, 2262
BtsIMutI CAGTG 7 cut(s) 17, 1114, 1234, 1861, 2262, 2561, 2676
BveI ACCTGC 2 cut(s) 357, 1675
Cac8I GCNNGC 6 cut(s) 169, 173, 864, 1079, 2094, 2282
CaiI CAGNNNCTG 2 cut(s) 288, 2707
CfoI GCGC 1 cut(s) 1044
Cfr13I GGNCC 6 cut(s) 30, 614, 967, 1017, 1166, 2212
ClaI ATCGAT 1 cut(s) 921
CseI GACGC 1 cut(s) 137
Csp6I GTAC 8 cut(s) 724, 1308, 1898, 2151, 2255, 2315, 2390, 2525
CviQI GTAC 8 cut(s) 724, 1308, 1898, 2151, 2255, 2315, 2390, 2525
DdeI CTNAG 9 cut(s) 444, 524, 1062, 1227, 1296, 1617, 2564, 2729, 2880
DpnI GATC 9 cut(s) 465, 785, 1014, 1395, 1707, 1923, 2621, 2895, 2910
DpnII GATC 9 cut(s) 463, 783, 1012, 1393, 1705, 1921, 2619, 2893, 2908
Eam1104I CTCTTC 5 cut(s) 1311, 2202, 2406, 2541, 2610
EarI CTCTTC 5 cut(s) 1311, 2202, 2406, 2541, 2610
Ecl136II GAGCTC 2 cut(s) 2716, 2725
Eco130I CCWWGG 4 cut(s) 145, 731, 1769, 2369
Eco24I GRGCYC 2 cut(s) 2718, 2727
Eco47I GGWCC 3 cut(s) 614, 1017, 2212
Eco53kI GAGCTC 2 cut(s) 2716, 2725
Eco57I CTGAAG 2 cut(s) 1299, 1766
Eco88I CYCGRG 1 cut(s) 696
EcoICRI GAGCTC 2 cut(s) 2716, 2725
EcoRI GAATTC 1 cut(s) 1652
EcoRII CCWGG 2 cut(s) 786, 1197
EcoT14I CCWWGG 4 cut(s) 145, 731, 1769, 2369
EcoT22I ATGCAT 3 cut(s) 86, 533, 2428
EcoT38I GRGCYC 2 cut(s) 2718, 2727
ErhI CCWWGG 4 cut(s) 145, 731, 1769, 2369
FalI AAGNNNNNCTT 6 cut(s) 374, 406, 2385, 2417, 2520, 2552
FaqI GGGAC 4 cut(s) 1003, 1180, 1604, 2052
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 2 cut(s) 1393, 1705
FriOI GRGCYC 2 cut(s) 2718, 2727
FspBI CTAG 6 cut(s) 362, 518, 738, 2034, 2048, 2430
GlaI GCGC 1 cut(s) 1043
GsaI CCCAGC 1 cut(s) 844
GsuI CTGGAG 1 cut(s) 2883
HaeII RGCGCY 1 cut(s) 1045
HaeIII GGCC 6 cut(s) 32, 917, 969, 991, 1113, 1168
HapII CCGG 3 cut(s) 103, 328, 888
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 1044
Hin1I GRCGYC 1 cut(s) 2346
Hin6I GCGC 1 cut(s) 1042
HinP1I GCGC 1 cut(s) 1042
HincII GTYRAC 2 cut(s) 43, 438
HindII GTYRAC 2 cut(s) 43, 438
HindIII AAGCTT 1 cut(s) 1229
HpaI GTTAAC 1 cut(s) 43
HpaII CCGG 3 cut(s) 103, 328, 888
HphI GGTGA 4 cut(s) 803, 1267, 1885, 2645
Hpy166II GTNNAC 5 cut(s) 43, 438, 1442, 1823, 2153
Hpy8I GTNNAC 5 cut(s) 43, 438, 1442, 1823, 2153
HpyCH4III ACNGT 7 cut(s) 728, 1238, 1378, 1670, 2241, 2389, 2680
HpyCH4IV ACGT 3 cut(s) 1210, 2346, 2577
HpyF10VI GCNNNNNNNGC 9 cut(s) 168, 656, 1274, 1568, 1975, 2119, 2371, 2506, 2722
HpyF3I CTNAG 9 cut(s) 444, 524, 1062, 1227, 1296, 1617, 2564, 2729, 2880
HpySE526I ACGT 3 cut(s) 1210, 2346, 2577
Hsp92I GRCGYC 1 cut(s) 2346
HspAI GCGC 1 cut(s) 1042
Ksp22I TGATCA 2 cut(s) 1393, 1705
KspAI GTTAAC 1 cut(s) 43
Kzo9I GATC 9 cut(s) 463, 783, 1012, 1393, 1705, 1921, 2619, 2893, 2908
LmnI GCTCC 6 cut(s) 1201, 1863, 2089, 2497, 2722, 2730
LweI GCATC 6 cut(s) 518, 1786, 2435, 2713, 2742, 2839
MaeI CTAG 6 cut(s) 362, 518, 738, 2034, 2048, 2430
MaeII ACGT 3 cut(s) 1210, 2346, 2577
MaeIII GTNAC 4 cut(s) 1222, 1282, 1687, 2000
MalI GATC 9 cut(s) 465, 785, 1014, 1395, 1707, 1923, 2621, 2895, 2910
MboI GATC 9 cut(s) 463, 783, 1012, 1393, 1705, 1921, 2619, 2893, 2908
MfeI CAATTG 1 cut(s) 157
MflI RGATCY 3 cut(s) 783, 2619, 2908
MhlI GDGCHC 4 cut(s) 1335, 1734, 2718, 2727
MlyI GAGTC 2 cut(s) 656, 1412
MmeI TCCRAC 2 cut(s) 772, 1505
Mph1103I ATGCAT 3 cut(s) 86, 533, 2428
MroXI GAANNNNTTC 1 cut(s) 2782
MseI TTAA 8 cut(s) 42, 392, 761, 1086, 1461, 1850, 1986, 2223
MslI CAYNNNNRTG 3 cut(s) 180, 445, 2709
MspA1I CMGCKG 2 cut(s) 611, 1508
MspCI CTTAAG 1 cut(s) 2222
MspI CCGG 3 cut(s) 103, 328, 888
MspR9I CCNGG 5 cut(s) 103, 329, 788, 889, 1199
MunI CAATTG 1 cut(s) 157
Mva1269I GAATGC 2 cut(s) 84, 1573
MvaI CCWGG 2 cut(s) 788, 1199
MwoI GCNNNNNNNGC 9 cut(s) 168, 656, 1274, 1568, 1975, 2119, 2371, 2506, 2722
NciI CCSGG 3 cut(s) 103, 329, 889
NcoI CCATGG 1 cut(s) 1769
NdeI CATATG 1 cut(s) 304
NdeII GATC 9 cut(s) 463, 783, 1012, 1393, 1705, 1921, 2619, 2893, 2908
NlaIV GGNNCC 4 cut(s) 785, 846, 1019, 1167
NmuCI GTSAC 1 cut(s) 1282
NsiI ATGCAT 3 cut(s) 86, 533, 2428
NspI RCATGY 4 cut(s) 905, 2255, 2426, 2561
NspV TTCGAA 1 cut(s) 1600
PaeR7I CTCGAG 1 cut(s) 696
PciI ACATGT 2 cut(s) 901, 2251
PctI GAATGC 2 cut(s) 84, 1573
PdmI GAANNNNTTC 1 cut(s) 2782
PfeI GAWTC 8 cut(s) 334, 704, 1217, 1241, 1465, 1550, 2353, 2778
Ple19I CGATCG 1 cut(s) 1015
PleI GAGTC 2 cut(s) 656, 1411
PpsI GAGTC 2 cut(s) 656, 1411
PscI ACATGT 2 cut(s) 901, 2251
PshAI GACNNNNGTC 2 cut(s) 132, 312
Psp124BI GAGCTC 2 cut(s) 2718, 2727
Psp6I CCWGG 2 cut(s) 786, 1197
PspFI CCCAGC 1 cut(s) 840
PspGI CCWGG 2 cut(s) 786, 1197
PspN4I GGNNCC 4 cut(s) 785, 846, 1019, 1167
PspPI GGNCC 6 cut(s) 30, 614, 967, 1017, 1166, 2212
PstI CTGCAG 2 cut(s) 1626, 1816
PstNI CAGNNNCTG 2 cut(s) 288, 2707
PsuI RGATCY 3 cut(s) 783, 2619, 2908
PvuI CGATCG 1 cut(s) 1015
PvuII CAGCTG 2 cut(s) 611, 1508
RsaI GTAC 8 cut(s) 725, 1309, 1899, 2152, 2256, 2316, 2391, 2526
RsaNI GTAC 8 cut(s) 724, 1308, 1898, 2151, 2255, 2315, 2390, 2525
RseI CAYNNNNRTG 3 cut(s) 180, 445, 2709
SacI GAGCTC 2 cut(s) 2718, 2727
SaqAI TTAA 8 cut(s) 42, 392, 761, 1086, 1461, 1850, 1986, 2223
Sau3AI GATC 9 cut(s) 463, 783, 1012, 1393, 1705, 1921, 2619, 2893, 2908
Sau96I GGNCC 6 cut(s) 30, 614, 967, 1017, 1166, 2212
SbfI CCTGCAGG 1 cut(s) 1816
SchI GAGTC 2 cut(s) 656, 1412
ScrFI CCNGG 5 cut(s) 103, 329, 788, 889, 1199
SdaI CCTGCAGG 1 cut(s) 1816
SduI GDGCHC 4 cut(s) 1335, 1734, 2718, 2727
SfaNI GCATC 6 cut(s) 518, 1786, 2435, 2713, 2742, 2839
SfcI CTRYAG 3 cut(s) 1311, 1622, 1812
Sfr274I CTCGAG 1 cut(s) 696
SfuI TTCGAA 1 cut(s) 1600
SinI GGWCC 3 cut(s) 614, 1017, 2212
SlaI CTCGAG 1 cut(s) 696
SmiMI CAYNNNNRTG 3 cut(s) 180, 445, 2709
SmlI CTYRAG 8 cut(s) 419, 664, 696, 1455, 2084, 2222, 2357, 2492
SmoI CTYRAG 8 cut(s) 419, 664, 696, 1455, 2084, 2222, 2357, 2492
Sse8387I CCTGCAGG 1 cut(s) 1816
SsiI CCGC 2 cut(s) 61, 2696
SspMI CTAG 6 cut(s) 362, 518, 738, 2034, 2048, 2430
SstI GAGCTC 2 cut(s) 2718, 2727
StyD4I CCNGG 5 cut(s) 101, 327, 786, 887, 1197
StyI CCWWGG 4 cut(s) 145, 731, 1769, 2369
TaaI ACNGT 7 cut(s) 728, 1238, 1378, 1670, 2241, 2389, 2680
TaiI ACGT 3 cut(s) 1213, 2349, 2580
TaqI TCGA 6 cut(s) 337, 466, 697, 921, 1600, 2018
TaqII GACCGA 2 cut(s) 1005, 1362
TatI WGTACW 7 cut(s) 723, 1307, 1897, 2150, 2254, 2389, 2524
TfiI GAWTC 8 cut(s) 334, 704, 1217, 1241, 1465, 1550, 2353, 2778
Tru1I TTAA 8 cut(s) 42, 392, 761, 1086, 1461, 1850, 1986, 2223
Tru9I TTAA 8 cut(s) 42, 392, 761, 1086, 1461, 1850, 1986, 2223
TscAI CASTG 7 cut(s) 17, 1114, 1241, 1868, 2269, 2568, 2683
TseFI GTSAC 1 cut(s) 1282
Tsp45I GTSAC 1 cut(s) 1282
TspGWI ACGGA 2 cut(s) 1415, 2170
TspRI CASTG 7 cut(s) 17, 1114, 1241, 1868, 2269, 2568, 2683
Vha464I CTTAAG 1 cut(s) 2222
VpaK11BI GGWCC 3 cut(s) 614, 1017, 2212
XapI RAATTY 8 cut(s) 908, 1537, 1652, 1837, 1951, 2079, 2217, 2487
XbaI TCTAGA 3 cut(s) 361, 517, 2429
XceI RCATGY 4 cut(s) 905, 2255, 2426, 2561
XcmI CCANNNNNNNNNTGG 4 cut(s) 855, 925, 950, 1106
XhoI CTCGAG 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 2782
XspI CTAG 6 cut(s) 362, 518, 738, 2034, 2048, 2430
ZraI GACGTC 1 cut(s) 2347
Zsp2I ATGCAT 3 cut(s) 86, 533, 2428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.