FvH4_7g09570

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000280
Physical Location & Seq
Reverse (-)
9188539 .. 9197854
9316 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09570.t1

Sequence Viewer

Length: 2487 bp
ATGTGGCGTGCTTGTCGTCAGATCCAAAATTCAGGGCATGGTAGACATGTGGAATTTAAGGCCATCGATTGCTTGGATTGGTGCGAGCTAGATATCAATATCGTCCAATTTTTTAATGGATACTTGGAGGGCCAGTTTGATGGGAAAATGTGGCCGCGAATTCTGAAACTCAACGATTGTTCCCTGGATGATTATCTGGAGAAGCGCCTTCCTCGTCATTGTGCTGAGTTTATTTGTTGCTTGCCATTTAAGGAATATACCCATCCTAGCAGTGGCTCTCTGAACCTTGCTGTAAAATTGCCTCCGGAGTGTGTAAAGCCAGACATGGGACCAAAGATGTACATTGCTTATGGTGTGTCCCAGGAGCTTGGACGTGGAGATTCAGTAACTAAGCTTCACTGTGATTCGTGTGATGTGGTGAATGTTTTGACACATACTGCCGAAGTGACAATCACTGCTGAGCAACTTTGTACTATAGAAGAGTTGAAAAAAAAACACATTGAACAAGACCGAAGGGAAATGTTTGGAAATTATGATACTGTGGATGACAATGTTGATAGTAAGGAGTCTGGCAGTGGGTCTTGTGTCAGAACTGCAAAGGATAAACAACGTTGTACTAAAGTTAAGGATCAGTTTGCAACTTTTCAAGAAAAGACTAACGTGGCTGTTCAAACTGATAGTTGGAATGGTGGAATTTGTTCAAAGGAATCCATGTCTGAAAAGAATGCAGAGGGAGGTGCTTTATGGGATATTTTTCGACGACAGGATGTTCCTAAGCTGCAGGAATATCTATTAAAGCATTACAAGGAATTCAGGCACACATACTGTTGTCCATTGCAGCAGGTTACTCATCCCATACATGATCAGACCTTTTATCTGACTTTGGAGCACAAGAGGCAGCTGAAGGAAGAATATGGAATTGAGCCATGGACATTTATCCAGAAACTAGGAGATGCTGTCTTTATTCCTGCAGGATGTCCACACCAAGTTAGAAACTTAAAGTCGTGCATAAAAGCTTCAGTTGAATTTGTCTCCCCTGAAAACGTTGGTGAGTGCTTACGTCTGACAGACGAGTTCCGCGCACTTCCACTAAAGCATAGAGCTAAGGAGGACAAATTGGAGGTGAAGAAAATGATTGTTCATGCTGTACGTGAGGCTGTGGAGATTTTGGAGCAGGATGTGAGGTTATCTAGCGTTAGAAATGTTAGTGGAAAGGAAGCTATGCAACAACAGAAAGAAGGTAGAAGAGAAGAGGAGGATGTCCAAATTATTGTAAAGAACCCTTCACAGCCTTCTACATGTCAGGGTAACTATGCAAACAAATCGAGAGAGGAAGCAGCTAGAGGGAGATCATATCAAGGAAAGGTAGAATTGCAAAAGGTTCAAATTCTGGAGGAGCAGCCACAAGAAGCAAGTAGAGTAGATGAAGACGTCCAAATTCCTAAGGGACACCCTTCACAGTCATCACAACATATACAGTCGACTGCTTATGTTGGTAGCCAGACAGAAGGAGGGGTACTGAAAATAACACGTGGAGAAGATGAAGAGGTCCAAATTCTTGAGGAGCAGCTTCTGCAATCATCACAAACTGTACTGGCTTTTCTTCATGCTGGTACCATTGAACATGCATCTAGGGAGGAAAAATCTGGGTGGCGACTACAACAAACAAGTGGAGAAGATGAAGAGGTCCAAATTCATGAGGAGCGGCCTTGGCAATCATCACAACATGTACAAGCCACCAGTCTTCATGTTGGTAGCATTGAACATGCATTGAGTGAGACGAAAGCTGGATGGCGACCACAGAAAACAAGCGGAGAAGATGAAGAAGTCCAAATTCTTGAGGAGCATCATTGCCAATCATCAAAACCTGTACAAACAGTTCTTCACATTGGTAGCATTGAACATACATCAAGAGAGGAAACATCTAGACAGAGACCAAAAGAAACAATTTGGGAAGGTGAAGAGGTCCAGATTCTTGAGGAGCAGCTCTTGCAATCATCACATGTACAAGCCAGTGTTCATGTCGATAGGATTGAACATGCATCGAGAGAGAAGAAAGCTGGATGGCGACCACAGAAAACAAGTGGAGAAGATGAAGAAGTCCAAATTTTGGAGCAGCCTTGCAAATCATCAAAACCTCTACAAGCAACTATTCACATTGGTAGCCTTGGATCTGCAATGAGAAAAGAAAAATTGGGAGGACGACAGCATGAAGAAAGGGGAGAACAAGAAGTGGTCCGAAATCTTGGTGATAAGCCTTCAGAGTTATCACAACCTGTACCTGTCCAGCCCACTGTTGATATTGATAAAGCAGTGCAGCATCTAGATGAGCTCGTGGAATTCCTTCAACATTTTGAACAGAGAAGGATGCCGATGGGAGGGAGAGATGGAAGAATCAGTTCTCAGTTCCAGCTTATATGCTCAGAGTTCTTGACTTTATCATTGGATCTTGGTGATGCACCTAATGATACAGAACCTCACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

829

Amino Acids

94.24

Weight (kDa)

5.57

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 239 - 343 2.4e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07610 AT3G07610 AT3G07610
fragaria_vesca FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24540 FvH4_5g24640 FvH4_5g29990 FvH4_5g29990 FvH4_5g29990 FvH4_7g06860 FvH4_7g09570 FvH4_7g09571 FvH4_7g09571
malus_domestica MD05G1184100.v1.1 MD06G1012500.v1.1 MD07G1099600.v1.1 MD07G1099700.v1.1
prunus_persica Prupe.2G123400_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1 Prupe.5G015100_v2.0.a1
pyrus_communis pycom06g01040 pycom10g12640
rosa_chinensis RchiOBHm_Chr1g0346431 RchiOBHm_Chr1g0346441 RchiOBHm_Chr3g0461961 RchiOBHm_Chr3g0461971 RchiOBHm_Chr3g0461991 RchiOBHm_Chr3g0462031 RchiOBHm_Chr3g0462041 RchiOBHm_Chr7g0215021 RchiOBHm_Chr7g0223871 RchiOBHm_Chr7g0223931 RchiOBHm_Chr7g0223991 RchiOBHm_Chr7g0224011 RchiOBHm_Chr7g0224041
rosa_laevigata RLG00000001919 RLG00000001920 RLG00000001924 RLG00000002699 RLG00000024884 RLG00000024888 RLG00000024889 RLG00000028799 RLG00000028800
rosa_multiflora Rmu_co8191480.1_g000001 Rmu_co8411417.1_g000001 Rmu_co8440445.1_g000001 Rmu_co8460737.1_g000001 Rmu_sc0003363.1_g000077 Rmu_sc0004308.1_g000026 Rmu_sc0004540.1_g000014 Rmu_sc0004540.1_g000026 Rmu_sc0007736.1_g000006 Rmu_sc0007736.1_g000008 Rmu_sc0007777.1_g000006 Rmu_sc0007777.1_g000009 Rmu_sc0007777.1_g000029 Rmu_sc0008432.1_g000002 Rmu_sc0008835.1_g000002 Rmu_sc0029902.1_g000002
rosa_roxburghii Rroxscaffold_3G00235160 Rroxscaffold_3G00235180 Rroxscaffold_3G00235210 Rroxscaffold_3G00244660 Rroxscaffold_4G00308520 Rroxscaffold_4G00308530 Rroxscaffold_6G00417830 Rroxscaffold_6G00417840
rosa_rugosa Rorug01G0179700 Rorug01G0179800 Rorug07G0149600 Rorug07G0221000 Rorug07G0221100 Rorug07G0221100
rosa_samantha Rh1AG199200 Rh1AG199300 Rh1AG199400 Rh1BG165100 Rh1BG165200 Rh1BG165300 Rh1BG165400 Rh1CG184300 Rh1CG184400 Rh1DG195800 Rh1DG195900 Rh1DG196000 Rh2BG420000 Rh3AG112800 Rh3BG115600 Rh3BG115700 Rh3BG115800 Rh3BG115900 Rh3CG117900 Rh3CG118300 Rh3CG118400 Rh3CG118500 Rh3DG117400 Rh3DG117500 Rh3DG117600 Rh6AG306600 Rh6BG312200 Rh7BG278000 Rh7BG355000 Rh7BG355400 Rh7BG355800 Rh7BG355900 Rh7BG356400 Rh7CG305900 Rh7CG382300 Rh7CG382800 Rh7CG383400 Rh7CG383500 Rh7DG290000 Rh7DG358300 Rh7DG358500 Rh7DG359600 Rh7DG359800
rosa_wichuraiana Rw0G007860 Rw1G016720 Rw1G016730 Rw7G024430 Rw7G030900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1434
Acc36I ACCTGC 1 cut(s) 832
Acc65I GGTACC 1 cut(s) 1613
AccB1I GGYRCC 1 cut(s) 1613
AccB7I CCANNNNNTGG 1 cut(s) 2110
AccBSI CCGCTC 1 cut(s) 1705
AccI GTMKAC 2 cut(s) 43, 1481
AccII CGCG 2 cut(s) 157, 1080
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 4 cut(s) 155, 1078, 1705, 1812
AclI AACGTT 2 cut(s) 610, 1044
AclWI GGATC 4 cut(s) 16, 636, 2179, 2454
AcoI YGGCCR 1 cut(s) 152
AcuI CTGAAG 3 cut(s) 923, 1002, 2244
AcvI CACGTG 1 cut(s) 1532
AcyI GRCGYC 1 cut(s) 1431
AfiI CCNNNNNNNGG 4 cut(s) 272, 326, 2110, 2378
AflIII ACRYGT 5 cut(s) 46, 1298, 1529, 1726, 2002
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 2 cut(s) 183, 360
Alw21I GWGCWC 2 cut(s) 891, 2334
Alw26I GTCTC 3 cut(s) 1036, 1772, 1927
AlwI GGATC 4 cut(s) 16, 636, 2179, 2454
AlwNI CAGNNNCTG 1 cut(s) 1573
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 4 cut(s) 60, 130, 152, 1706
ApeKI GCWGC 9 cut(s) 778, 838, 898, 1337, 1399, 1567, 1984, 2116, 2317
Asp700I GAANNNNTTC 3 cut(s) 697, 2343, 2398
Asp718I GGTACC 1 cut(s) 1613
AspLEI GCGC 2 cut(s) 207, 1082
AspS9I GGNCC 6 cut(s) 130, 329, 1549, 1687, 1966, 2236
AsuHPI GGTGA 6 cut(s) 430, 1061, 1135, 1970, 2261, 2465
AvaII GGWCC 5 cut(s) 329, 1549, 1687, 1966, 2236
AxyI CCTNAGG 1 cut(s) 1443
BanI GGYRCC 1 cut(s) 1613
BanII GRGCYC 1 cut(s) 2334
BarI GAAGNNNNNNTAC 4 cut(s) 378, 410, 1500, 1532
BauI CACGAG 1 cut(s) 2333
BbrPI CACGTG 1 cut(s) 1532
BbsI GAAGAC 2 cut(s) 1434, 1736
Bbv12I GWGCWC 2 cut(s) 891, 2334
BbvI GCAGC 9 cut(s) 765, 850, 910, 1349, 1411, 1579, 1996, 2128, 2329
BccI CCATC 7 cut(s) 71, 134, 270, 1785, 2058, 2368, 2381
BcgI CGANNNNNNTGC 2 cut(s) 1305, 1339
BciT130I CCWGG 2 cut(s) 185, 362
BciVI GTATCC 1 cut(s) 113
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 3 cut(s) 1036, 1772, 1927
BfaI CTAG 8 cut(s) 89, 267, 947, 1191, 1341, 1632, 1926, 2324
BfmI CTRYAG 3 cut(s) 474, 779, 969
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 832
BfuI GTATCC 1 cut(s) 113
BlpI GCTNAGC 1 cut(s) 459
Bme1390I CCNGG 2 cut(s) 185, 362
Bme18I GGWCC 5 cut(s) 329, 1549, 1687, 1966, 2236
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 6 cut(s) 130, 329, 1549, 1687, 1966, 2236
BmiI GGNNCC 2 cut(s) 330, 1615
BmrFI CCNGG 2 cut(s) 185, 362
BmsI GCATC 7 cut(s) 943, 1637, 1855, 2051, 2329, 2358, 2446
BpiI GAAGAC 2 cut(s) 1434, 1736
BpmI CTGGAG 2 cut(s) 218, 1412
Bpu10I CCTNAGC 2 cut(s) 774, 1104
Bpu1102I GCTNAGC 1 cut(s) 459
BpuEI CTTGAG 3 cut(s) 1580, 1859, 1997
Bsa29I ATCGAT 1 cut(s) 66
BsaAI YACGTR 2 cut(s) 1151, 1532
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 1431
BsaI GGTCTC 1 cut(s) 1927
BsaJI CCNNGG 5 cut(s) 183, 360, 926, 1709, 2167
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 6 cut(s) 119, 149, 369, 399, 942, 972
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 326, 2110, 2378
Bse1I ACTGG 4 cut(s) 133, 1599, 1740, 2013
Bse21I CCTNAGG 1 cut(s) 1443
Bse3DI GCAATG 4 cut(s) 342, 833, 1849, 2184
Bse8I GATNNNNATC 1 cut(s) 192
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 2 cut(s) 185, 362
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 5 cut(s) 183, 360, 926, 1709, 2167
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 4 cut(s) 272, 326, 2110, 2378
BseMI GCAATG 4 cut(s) 342, 833, 1849, 2184
BseMII CTCAG 4 cut(s) 216, 450, 2417, 2436
BseNI ACTGG 4 cut(s) 133, 1599, 1740, 2013
BseRI GAGGAG 6 cut(s) 1268, 1409, 1577, 1715, 1856, 1994
BseXI GCAGC 9 cut(s) 765, 850, 910, 1349, 1411, 1579, 1996, 2128, 2329
BsgI GTGCAG 1 cut(s) 2336
Bsh1236I CGCG 2 cut(s) 157, 1080
BshFI GGCC 4 cut(s) 62, 132, 154, 1708
BshNI GGYRCC 1 cut(s) 1613
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 891, 2334
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 3 cut(s) 342, 343, 1461
BslI CCNNNNNNNGG 4 cut(s) 272, 326, 2110, 2378
BsmAI GTCTC 3 cut(s) 1036, 1772, 1927
BsmBI CGTCTC 1 cut(s) 1772
BsmFI GGGAC 3 cut(s) 342, 343, 1461
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 4 cut(s) 62, 132, 154, 1708
Bso31I GGTCTC 1 cut(s) 1927
Bsp1286I GDGCHC 2 cut(s) 891, 2334
Bsp13I TCCGGA 1 cut(s) 304
Bsp1407I TGTACA 4 cut(s) 339, 1729, 1870, 2005
Bsp143I GATC 6 cut(s) 21, 628, 862, 1349, 2171, 2446
Bsp1720I GCTNAGC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 926
BspACI CCGC 4 cut(s) 155, 1078, 1705, 1812
BspANI GGCC 4 cut(s) 62, 132, 154, 1708
BspCNI CTCAG 4 cut(s) 217, 451, 2416, 2435
BspDI ATCGAT 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 2 cut(s) 157, 1080
BspHI TCATGA 1 cut(s) 1696
BspLI GGNNCC 2 cut(s) 330, 1615
BspMAI CTGCAG 2 cut(s) 783, 973
BspMI ACCTGC 1 cut(s) 832
BspPI GGATC 4 cut(s) 16, 636, 2179, 2454
BspT107I GGYRCC 1 cut(s) 1613
BspTNI GGTCTC 1 cut(s) 1927
BsrBI CCGCTC 1 cut(s) 1705
BsrDI GCAATG 4 cut(s) 342, 833, 1849, 2184
BsrGI TGTACA 4 cut(s) 339, 1729, 1870, 2005
BsrI ACTGG 4 cut(s) 133, 1599, 1740, 2013
BssECI CCNNGG 5 cut(s) 183, 360, 926, 1709, 2167
BssMI GATC 6 cut(s) 21, 628, 862, 1349, 2171, 2446
BssNI GRCGYC 1 cut(s) 1431
BssSI CACGAG 1 cut(s) 2333
BssT1I CCWWGG 3 cut(s) 926, 1709, 2167
Bst2BI CACGAG 1 cut(s) 2333
Bst2UI CCWGG 2 cut(s) 185, 362
Bst4CI ACNGT 8 cut(s) 401, 541, 827, 1461, 1479, 1591, 1879, 2296
Bst6I CTCTTC 6 cut(s) 474, 1240, 1245, 1539, 1677, 1956
BstACI GRCGYC 1 cut(s) 1431
BstAPI GCANNNNNTGC 2 cut(s) 1573, 1990
BstAUI TGTACA 4 cut(s) 339, 1729, 1870, 2005
BstBAI YACGTR 2 cut(s) 1151, 1532
BstC8I GCNNGC 3 cut(s) 9, 86, 242
BstDEI CTNAG 8 cut(s) 225, 390, 459, 774, 1104, 1443, 2403, 2422
BstDSI CCRYGG 1 cut(s) 926
BstFNI CGCG 2 cut(s) 157, 1080
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 2 cut(s) 207, 1082
BstKTI GATC 6 cut(s) 24, 631, 865, 1352, 2174, 2449
BstMAI GTCTC 3 cut(s) 1036, 1772, 1927
BstMBI GATC 6 cut(s) 21, 628, 862, 1349, 2171, 2446
BstMWI GCNNNNNNNGC 4 cut(s) 895, 1573, 1711, 1990
BstNI CCWGG 2 cut(s) 185, 362
BstNSI RCATGY 7 cut(s) 50, 1302, 1628, 1730, 1769, 2006, 2042
BstSCI CCNGG 2 cut(s) 183, 360
BstSFI CTRYAG 3 cut(s) 474, 779, 969
BstUI CGCG 2 cut(s) 157, 1080
BstV1I GCAGC 9 cut(s) 765, 850, 910, 1349, 1411, 1579, 1996, 2128, 2329
BstV2I GAAGAC 2 cut(s) 1434, 1736
BstX2I RGATCY 3 cut(s) 21, 2171, 2446
BstXI CCANNNNNNTGG 2 cut(s) 140, 368
BstYI RGATCY 3 cut(s) 21, 2171, 2446
Bsu15I ATCGAT 1 cut(s) 66
Bsu36I CCTNAGG 1 cut(s) 1443
BsuI GTATCC 1 cut(s) 113
BsuRI GGCC 4 cut(s) 62, 132, 154, 1708
BsuTUI ATCGAT 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 926
BtrI CACGTC 1 cut(s) 374
BtsI GCAGTG 4 cut(s) 277, 453, 580, 2319
BtsIMutI CAGTG 7 cut(s) 277, 397, 453, 580, 2020, 2292, 2319
BveI ACCTGC 1 cut(s) 832
Cac8I GCNNGC 3 cut(s) 9, 86, 242
CaiI CAGNNNCTG 1 cut(s) 1573
CciI TCATGA 1 cut(s) 1696
CfoI GCGC 2 cut(s) 207, 1082
Cfr13I GGNCC 6 cut(s) 130, 329, 1549, 1687, 1966, 2236
ClaI ATCGAT 1 cut(s) 66
DdeI CTNAG 8 cut(s) 225, 390, 459, 774, 1104, 1443, 2403, 2422
DpnI GATC 6 cut(s) 23, 630, 864, 1351, 2173, 2448
DpnII GATC 6 cut(s) 21, 628, 862, 1349, 2171, 2446
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 6 cut(s) 474, 1240, 1245, 1539, 1677, 1956
EarI CTCTTC 6 cut(s) 474, 1240, 1245, 1539, 1677, 1956
Ecl136II GAGCTC 1 cut(s) 2332
Eco130I CCWWGG 3 cut(s) 926, 1709, 2167
Eco24I GRGCYC 1 cut(s) 2334
Eco31I GGTCTC 1 cut(s) 1927
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 5 cut(s) 329, 1549, 1687, 1966, 2236
Eco53kI GAGCTC 1 cut(s) 2332
Eco57I CTGAAG 3 cut(s) 923, 1002, 2244
Eco72I CACGTG 1 cut(s) 1532
Eco81I CCTNAGG 1 cut(s) 1443
EcoICRI GAGCTC 1 cut(s) 2332
EcoRI GAATTC 3 cut(s) 159, 809, 2339
EcoRII CCWGG 2 cut(s) 183, 360
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 3 cut(s) 926, 1709, 2167
EcoT22I ATGCAT 3 cut(s) 1630, 1771, 2044
EcoT38I GRGCYC 1 cut(s) 2334
ErhI CCWWGG 3 cut(s) 926, 1709, 2167
Esp3I CGTCTC 1 cut(s) 1772
FaqI GGGAC 3 cut(s) 342, 343, 1461
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 2 cut(s) 43, 1481
FriOI GRGCYC 1 cut(s) 2334
FspBI CTAG 8 cut(s) 89, 267, 947, 1191, 1341, 1632, 1926, 2324
GlaI GCGC 2 cut(s) 206, 1081
GsuI CTGGAG 2 cut(s) 218, 1412
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 4 cut(s) 62, 132, 154, 1708
HapII CCGG 1 cut(s) 305
HhaI GCGC 2 cut(s) 207, 1082
Hin1I GRCGYC 1 cut(s) 1431
Hin6I GCGC 2 cut(s) 205, 1080
HinP1I GCGC 2 cut(s) 205, 1080
HincII GTYRAC 1 cut(s) 1482
HindII GTYRAC 1 cut(s) 1482
HindIII AAGCTT 2 cut(s) 392, 1014
HinfI GANTC 6 cut(s) 380, 404, 566, 707, 1972, 2394
HpaII CCGG 1 cut(s) 305
HphI GGTGA 6 cut(s) 430, 1061, 1135, 1970, 2261, 2465
Hpy166II GTNNAC 3 cut(s) 44, 980, 1482
Hpy8I GTNNAC 3 cut(s) 44, 980, 1482
Hpy99I CGWCG 1 cut(s) 762
HpyCH4III ACNGT 8 cut(s) 401, 541, 827, 1461, 1479, 1591, 1879, 2296
HpyCH4IV ACGT 8 cut(s) 373, 610, 660, 1044, 1060, 1150, 1431, 1531
HpyF10VI GCNNNNNNNGC 4 cut(s) 895, 1573, 1711, 1990
HpyF3I CTNAG 8 cut(s) 225, 390, 459, 774, 1104, 1443, 2403, 2422
HpySE526I ACGT 8 cut(s) 373, 610, 660, 1044, 1060, 1150, 1431, 1531
Hsp92I GRCGYC 1 cut(s) 1431
HspAI GCGC 2 cut(s) 205, 1080
Kpn2I TCCGGA 1 cut(s) 304
KpnI GGTACC 1 cut(s) 1617
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 6 cut(s) 21, 628, 862, 1349, 2171, 2446
LmnI GCTCC 9 cut(s) 364, 886, 1171, 1396, 1564, 1702, 1843, 1981, 2113
Lsp1109I GCAGC 9 cut(s) 765, 850, 910, 1349, 1411, 1579, 1996, 2128, 2329
LweI GCATC 7 cut(s) 943, 1637, 1855, 2051, 2329, 2358, 2446
MaeI CTAG 8 cut(s) 89, 267, 947, 1191, 1341, 1632, 1926, 2324
MaeII ACGT 8 cut(s) 373, 610, 660, 1044, 1060, 1150, 1431, 1531
MaeIII GTNAC 4 cut(s) 385, 445, 844, 1307
MalI GATC 6 cut(s) 23, 630, 864, 1351, 2173, 2448
MbiI CCGCTC 1 cut(s) 1705
MboI GATC 6 cut(s) 21, 628, 862, 1349, 2171, 2446
MflI RGATCY 3 cut(s) 21, 2171, 2446
MhlI GDGCHC 2 cut(s) 891, 2334
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 662
Mph1103I ATGCAT 3 cut(s) 1630, 1771, 2044
MroI TCCGGA 1 cut(s) 304
MroXI GAANNNNTTC 3 cut(s) 697, 2343, 2398
MseI TTAA 6 cut(s) 57, 114, 249, 624, 794, 998
MslI CAYNNNNRTG 1 cut(s) 2325
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 185, 362
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 2 cut(s) 185, 362
MvnI CGCG 2 cut(s) 157, 1080
MwoI GCNNNNNNNGC 4 cut(s) 895, 1573, 1711, 1990
NcoI CCATGG 1 cut(s) 926
NdeII GATC 6 cut(s) 21, 628, 862, 1349, 2171, 2446
NlaIV GGNNCC 2 cut(s) 330, 1615
NmuCI GTSAC 1 cut(s) 445
NsiI ATGCAT 3 cut(s) 1630, 1771, 2044
NspI RCATGY 7 cut(s) 50, 1302, 1628, 1730, 1769, 2006, 2042
PagI TCATGA 1 cut(s) 1696
PciI ACATGT 4 cut(s) 46, 1298, 1726, 2002
PctI GAATGC 1 cut(s) 730
PdmI GAANNNNTTC 3 cut(s) 697, 2343, 2398
PfeI GAWTC 5 cut(s) 380, 404, 707, 1972, 2394
PflMI CCANNNNNTGG 1 cut(s) 2110
PleI GAGTC 1 cut(s) 574
PmaCI CACGTG 1 cut(s) 1532
PmlI CACGTG 1 cut(s) 1532
PpsI GAGTC 1 cut(s) 574
Ppu21I YACGTR 2 cut(s) 1151, 1532
PscI ACATGT 4 cut(s) 46, 1298, 1726, 2002
Psp124BI GAGCTC 1 cut(s) 2334
Psp1406I AACGTT 2 cut(s) 610, 1044
Psp6I CCWGG 2 cut(s) 183, 360
PspCI CACGTG 1 cut(s) 1532
PspGI CCWGG 2 cut(s) 183, 360
PspN4I GGNNCC 2 cut(s) 330, 1615
PspPI GGNCC 6 cut(s) 130, 329, 1549, 1687, 1966, 2236
PsrI GAACNNNNNNTAC 2 cut(s) 1863, 1895
PstI CTGCAG 2 cut(s) 783, 973
PstNI CAGNNNCTG 1 cut(s) 1573
PsuI RGATCY 3 cut(s) 21, 2171, 2446
PvuII CAGCTG 1 cut(s) 901
RseI CAYNNNNRTG 1 cut(s) 2325
SacI GAGCTC 1 cut(s) 2334
SalI GTCGAC 1 cut(s) 1480
SaqAI TTAA 6 cut(s) 57, 114, 249, 624, 794, 998
Sau3AI GATC 6 cut(s) 21, 628, 862, 1349, 2171, 2446
Sau96I GGNCC 6 cut(s) 130, 329, 1549, 1687, 1966, 2236
SbfI CCTGCAGG 1 cut(s) 973
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 2 cut(s) 185, 362
SdaI CCTGCAGG 1 cut(s) 973
SduI GDGCHC 2 cut(s) 891, 2334
SfaNI GCATC 7 cut(s) 943, 1637, 1855, 2051, 2329, 2358, 2446
SfcI CTRYAG 3 cut(s) 474, 779, 969
SinI GGWCC 5 cut(s) 329, 1549, 1687, 1966, 2236
SmiMI CAYNNNNRTG 1 cut(s) 2325
SmlI CTYRAG 3 cut(s) 1559, 1838, 1976
SmoI CTYRAG 3 cut(s) 1559, 1838, 1976
Sse8387I CCTGCAGG 1 cut(s) 973
SsiI CCGC 4 cut(s) 155, 1078, 1705, 1812
SspMI CTAG 8 cut(s) 89, 267, 947, 1191, 1341, 1632, 1926, 2324
SstI GAGCTC 1 cut(s) 2334
StyD4I CCNGG 2 cut(s) 183, 360
StyI CCWWGG 3 cut(s) 926, 1709, 2167
TaaI ACNGT 8 cut(s) 401, 541, 827, 1461, 1479, 1591, 1879, 2296
TaiI ACGT 8 cut(s) 376, 613, 663, 1047, 1063, 1153, 1434, 1534
TaqI TCGA 6 cut(s) 66, 757, 1325, 1481, 2025, 2045
TaqII GACCGA 1 cut(s) 525
TatI WGTACW 7 cut(s) 339, 470, 614, 1591, 1729, 1870, 2005
TauI GCSGC 2 cut(s) 157, 1708
TfiI GAWTC 5 cut(s) 380, 404, 707, 1972, 2394
Tru1I TTAA 6 cut(s) 57, 114, 249, 624, 794, 998
Tru9I TTAA 6 cut(s) 57, 114, 249, 624, 794, 998
TscAI CASTG 7 cut(s) 277, 404, 460, 580, 2020, 2299, 2319
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 9 cut(s) 778, 838, 898, 1337, 1399, 1567, 1984, 2116, 2317
Tsp45I GTSAC 1 cut(s) 445
TspRI CASTG 7 cut(s) 277, 404, 460, 580, 2020, 2299, 2319
Van91I CCANNNNNTGG 1 cut(s) 2110
VpaK11BI GGWCC 5 cut(s) 329, 1549, 1687, 1966, 2236
XbaI TCTAGA 2 cut(s) 1925, 2323
XceI RCATGY 7 cut(s) 50, 1302, 1628, 1730, 1769, 2006, 2042
XcmI CCANNNNNNNNNTGG 3 cut(s) 70, 113, 269
XmiI GTMKAC 2 cut(s) 43, 1481
XmnI GAANNNNTTC 3 cut(s) 697, 2343, 2398
XspI CTAG 8 cut(s) 89, 267, 947, 1191, 1341, 1632, 1926, 2324
ZraI GACGTC 1 cut(s) 1432
Zsp2I ATGCAT 3 cut(s) 1630, 1771, 2044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.