Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Forward (+)

1555813 .. 1556622

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1020000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTTGTTCTGACAGAAAATGGGGGAATACACACTCTCACAGGGACACAGGGAGTCTCGGTGAGGGACAACTACATAAGGGCAACTCTTGATTTTGATGGGATTTTCGCACTATATTCTCACCCGAAAAATTTCACTGGAAATGCAAGCTGGAGGAGTCCCCTGTGGTATAAGCCGGATGATATTTGCCAAGCACTTTTGGAAGACGAGGGCGTTGGTGTCTGCGGATACAACAGTGTCTGTAAGATCAACCCAGACAAAAGGCCAACCTGCGATTGCCCAAAAGGATTTTCGTTTCTTGATCCCAAGGACAAATACCGAGGCTGTAAACCCGATTTTATACAAGGCTGTGAAGAAGATAAGCTACAAAGTCCTAGAAAAGATTTGTATGATGTCGAAGTGCTGACAGATACTGATTGGCCAACCTCAGATTATGTGCAGCTGAAGCCTTTTACCGCGGACAAGTGCAATGAATCTTGCTTTCAAGACTGTTTGTGCGCTGTTGCTGTTTTCAGGCTTGATACCTGCTGGAAAAAGAAGTTACCTCTATCAAACGGGAGAGTGGACGAAAATCTTAATTCACAGACCTTCATCAAAGTCCGAAAGGATAATGTAAATCTGCAGTTTCCTCCAATGCCAATTCCAGATGATAAAGAGAAGAGCAAGACCAAACTGATACATGTGGTATCAGCACTATTAGGTATGACACGCCCCGACCCTGATATTTCCCCGAATATCAGGGTAGGCACGTGCTGGCCGACACCCGAGGGTGACGAAAGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

262

Amino Acids

29.44

Weight (kDa)

5.31

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	278, 533
AccII	CGCG	1 cut(s)	458
AciI	CCGC	3 cut(s)	225, 456, 458
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	2 cut(s)	419, 755
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	464
AcvI	CACGTG	1 cut(s)	750
AflIII	ACRYGT	1 cut(s)	679
AgsI	TTSAA	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AluBI	AGCT	3 cut(s)	150, 364, 442
AluI	AGCT	3 cut(s)	150, 364, 442
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	2 cut(s)	240, 413
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	3 cut(s)	263, 419, 755
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	73, 113, 782
AvaI	CYCGRG	1 cut(s)	764
BaeI	ACNNNNGTAYC	2 cut(s)	220, 253
BalI	TGGCCA	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BbrPI	CACGTG	1 cut(s)	750
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	620
BfuAI	ACCTGC	2 cut(s)	278, 533
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
BmeT110I	CYCGRG	1 cut(s)	764
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	750
BsaJI	CCNNGG	4 cut(s)	306, 319, 456, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	475
BseDI	CCNNGG	4 cut(s)	306, 319, 456, 765
BseGI	GGATG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	3 cut(s)	265, 421, 757
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	3 cut(s)	58, 80, 144
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	3 cut(s)	58, 80, 144
BsnI	GGCC	3 cut(s)	265, 421, 757
BsoBI	CYCGRG	1 cut(s)	764
Bsp143I	GATC	2 cut(s)	246, 301
BspACI	CCGC	3 cut(s)	225, 456, 458
BspANI	GGCC	3 cut(s)	265, 421, 757
BspCNI	CTCAG	1 cut(s)	440
BspFNI	CGCG	1 cut(s)	458
BspMAI	CTGCAG	1 cut(s)	624
BspMI	ACCTGC	2 cut(s)	278, 533
BspPI	GGATC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	4 cut(s)	306, 319, 456, 765
BssMI	GATC	2 cut(s)	246, 301
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	236, 491
Bst6I	CTCTTC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	148, 755
BstDEI	CTNAG	1 cut(s)	427
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	2 cut(s)	249, 304
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	246, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	683
BstSFI	CTRYAG	1 cut(s)	620
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	265, 421, 757
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	135, 241
BveI	ACCTGC	2 cut(s)	278, 533
Cac8I	GCNNGC	2 cut(s)	148, 755
CaiI	CAGNNNCTG	2 cut(s)	240, 413
CfoI	GCGC	1 cut(s)	500
Cfr42I	CCGCGG	1 cut(s)	459
CviAII	CATG	1 cut(s)	680
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	2 cut(s)	248, 303
DpnII	GATC	2 cut(s)	246, 301
EaeI	YGGCCR	2 cut(s)	419, 755
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	464
Eco72I	CACGTG	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	683
FaiI	YATR	8 cut(s)	77, 115, 171, 341, 390, 435, 681, 704
FaqI	GGGAC	3 cut(s)	58, 80, 144
FatI	CATG	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	1 cut(s)	440
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	3 cut(s)	265, 421, 757
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	500
Hin1II	CATG	1 cut(s)	683
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HinfI	GANTC	3 cut(s)	54, 157, 473
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	3 cut(s)	73, 113, 782
Hpy166II	GTNNAC	2 cut(s)	329, 565
Hpy188I	TCNGA	3 cut(s)	12, 430, 602
Hpy188III	TCNNGA	4 cut(s)	89, 299, 485, 644
Hpy8I	GTNNAC	2 cut(s)	329, 565
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	2 cut(s)	236, 491
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	4 cut(s)	146, 439, 468, 622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	1 cut(s)	683
HspAI	GCGC	1 cut(s)	498
KspI	CCGCGG	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	246, 301
LguI	GCTCTTC	1 cut(s)	653
Lsp1109I	GCAGC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	2 cut(s)	540, 770
MalI	GATC	2 cut(s)	248, 303
MboI	GATC	2 cut(s)	246, 301
MboII	GAAGA	4 cut(s)	215, 365, 368, 670
MlsI	TGGCCA	1 cut(s)	421
MluCI	AATT	3 cut(s)	130, 577, 639
MluNI	TGGCCA	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	63, 166
MnlI	CCTC	8 cut(s)	57, 147, 202, 314, 436, 555, 639, 760
Mox20I	TGGCCA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	421
MseI	TTAA	2 cut(s)	576, 784
Msp20I	TGGCCA	1 cut(s)	421
MspA1I	CMGCKG	2 cut(s)	442, 458
MspI	CCGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeII	GATC	2 cut(s)	246, 301
NlaIII	CATG	1 cut(s)	683
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	1 cut(s)	683
PciI	ACATGT	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	441
PleI	GAGTC	2 cut(s)	62, 165
PmaCI	CACGTG	1 cut(s)	750
PmlI	CACGTG	1 cut(s)	750
PpsI	GAGTC	2 cut(s)	62, 165
Ppu21I	YACGTR	1 cut(s)	750
PscI	ACATGT	1 cut(s)	679
PspCI	CACGTG	1 cut(s)	750
PstI	CTGCAG	1 cut(s)	624
PstNI	CAGNNNCTG	2 cut(s)	240, 413
PvuII	CAGCTG	1 cut(s)	442
SacII	CCGCGG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	576, 784
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	2 cut(s)	246, 301
SchI	GAGTC	2 cut(s)	63, 166
SfcI	CTRYAG	1 cut(s)	620
Sfr303I	CCGCGG	1 cut(s)	459
SgrBI	CCGCGG	1 cut(s)	459
Sse9I	AATT	3 cut(s)	130, 577, 639
SsiI	CCGC	3 cut(s)	225, 456, 458
SspMI	CTAG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	236, 491
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	130, 577, 639
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	2 cut(s)	576, 784
Tru9I	TTAA	2 cut(s)	576, 784
TscAI	CASTG	2 cut(s)	142, 241
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	2 cut(s)	486, 580
TspRI	CASTG	2 cut(s)	142, 241
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	683
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.