RchiOBHm_Chr5g0078911

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84731878 .. 84732915
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35340

Sequence Viewer

Length: 1038 bp
ATGTGGGATCAGTTCTTCTGGGCACCTCTGTCTGTTAGTTTTATGTTAGGTACTGCAGTTCTGGGACTTTTCTTTGGTTTCCGGAAGAAACATGCAAGGTTTCCACAAAATGATTTGGACACAAATTTGTGTTCTTTTAGTCACAAAGAGCTTGAAGAAGCAACAAATGGATTCAACGAAGAATTAGGGAAGGGTTGTTTTGGTATTGTTTACAAAGGGATAATACAAATTGGTTCGGGTGTCCAAGTGGCAGTGAAGAAGCTCAACTGTGTGATACAAGATGGTGAGAGGGAATTCAAGACGGAACTGAACATAATTGGTCGGACACATCACAAGAATTTGGTTCATCTGGTTGGATATTGTGATGAGGGACAACAGCGATCACTAGTATATGAATTCTTGAGCAATGGAACATTAGCAAGCTTCCTTTTTGGTGATGAGAAACCCAGTTGGAGGCAGCGAATGGAAATTGCTTATGGTGTTGCCAAAGGGCTTCTGTATTTGCATGAAGAGTGTACCGCGCAAACCATCCATTGTGATATAAAGCTTCAGAACATCCTTCTTGATGATAATTACAATGCTCAGATCTCTGATTTCGGCTTGGTGAAGCTTTTGATGATGAATCAGAGCCAGACGCATACTGCCATCAGGGGAACAAAAGGGTATGTTTCACCTGAGTGGTTTAGGAACATGGCAATCACTACCAAAGTTGATGTGTATAGCTTTGGAGTTGTGCTGCTAGAGATCATTTGCTGCAGGAGAAGTGTCGCTATGGAAAATAACTGTGAAGAGAAAGCAATTTTGACTGATTGGGTTTATGATTGCTACAGAGAGGGAGTGTTAGAGACTGTTCTAGATCACAAAGTCGACGCCTTGGAAGGTGAAATGAAGCTGGAAGAGGCTGTCATGATTTCTCTTTGGTGTATTCAAGAAGACCCATCTCTTCGACCCAAGATGAGGAAGGTTGTGCAGATGCTTGAAGGATTAGTGGTAGTACATGCTCCACCATGCCCATCCCCATACAACAGAGTGGCGTGA

Protein Analysis

345

Amino Acids

39.24

Weight (kDa)

5.73

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 58 - 326 1.6e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 59 - 324 1.9e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 867
AccII CGCG 1 cut(s) 521
AccIII TCCGGA 1 cut(s) 81
AciI CCGC 1 cut(s) 519
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 4 cut(s) 124, 293, 337, 395
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 870
AfaI GTAC 3 cut(s) 52, 517, 996
AfiI CCNNNNNNNGG 2 cut(s) 453, 957
AgsI TTSAA 5 cut(s) 155, 175, 298, 929, 980
AhlI ACTAGT 1 cut(s) 385
AleI CACNNNNGTG 1 cut(s) 676
AluBI AGCT 7 cut(s) 151, 262, 423, 547, 610, 723, 892
AluI AGCT 7 cut(s) 151, 262, 423, 547, 610, 723, 892
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 1 cut(s) 15
Aor13HI TCCGGA 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 457, 736, 753
ApoI RAATTY 4 cut(s) 124, 293, 337, 395
AspLEI GCGC 1 cut(s) 523
AsuHPI GGTGA 5 cut(s) 296, 446, 616, 663, 893
BaeGI GKGCMC 1 cut(s) 25
BaeI ACNNNNGTAYC 2 cut(s) 42, 75
BanI GGYRCC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 939
BbvI GCAGC 3 cut(s) 469, 723, 740
BccI CCATC 5 cut(s) 275, 536, 653, 946, 1021
BcoDI GTCTC 1 cut(s) 839
BcuI ACTAGT 1 cut(s) 385
BfaI CTAG 3 cut(s) 386, 740, 854
BfmI CTRYAG 3 cut(s) 54, 754, 826
BglII AGATCT 1 cut(s) 585
BisI GCNGC 3 cut(s) 458, 737, 754
BlsI GCNGC 3 cut(s) 459, 738, 755
BmiI GGNNCC 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 963
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 421
BsaHI GRCGYC 1 cut(s) 870
BsaJI CCNNGG 1 cut(s) 873
BsaWI WCCGGW 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 453, 957
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 412
BseAI TCCGGA 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 873
BseGI GGATG 3 cut(s) 528, 555, 1013
BseLI CCNNNNNNNGG 2 cut(s) 453, 957
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 596, 666
BseNI ACTGG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 3 cut(s) 469, 723, 740
BsgI GTGCAG 1 cut(s) 989
Bsh1236I CGCG 1 cut(s) 521
BshNI GGYRCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 82
BslFI GGGAC 2 cut(s) 78, 384
BslI CCNNNNNNNGG 2 cut(s) 453, 957
BsmAI GTCTC 1 cut(s) 839
BsmFI GGGAC 2 cut(s) 78, 384
Bsp1286I GDGCHC 1 cut(s) 25
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 5 cut(s) 7, 380, 585, 744, 856
BspACI CCGC 1 cut(s) 519
BspCNI CTCAG 2 cut(s) 595, 667
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 1 cut(s) 521
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 2 cut(s) 58, 758
BspPI GGATC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 873
BssMI GATC 5 cut(s) 7, 380, 585, 744, 856
BssNI GRCGYC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 873
Bst4CI ACNGT 3 cut(s) 269, 785, 850
Bst6I CTCTTC 4 cut(s) 504, 783, 891, 948
BstACI GRCGYC 1 cut(s) 870
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 582, 675
BstF5I GGATG 3 cut(s) 528, 555, 1013
BstFNI CGCG 1 cut(s) 521
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 5 cut(s) 10, 383, 588, 747, 859
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 5 cut(s) 7, 380, 585, 744, 856
BstNSI RCATGY 2 cut(s) 95, 1001
BstSFI CTRYAG 3 cut(s) 54, 754, 826
BstSLI GKGCMC 1 cut(s) 25
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 3 cut(s) 469, 723, 740
BstV2I GAAGAC 1 cut(s) 939
BstX2I RGATCY 1 cut(s) 585
BstYI RGATCY 1 cut(s) 585
BtsCI GGATG 3 cut(s) 528, 555, 1013
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 421
CciI TCATGA 1 cut(s) 906
CfoI GCGC 1 cut(s) 523
CseI GACGC 2 cut(s) 643, 878
Csp6I GTAC 3 cut(s) 51, 516, 995
CviAII CATG 6 cut(s) 92, 506, 691, 907, 998, 1008
CviQI GTAC 3 cut(s) 51, 516, 995
DdeI CTNAG 2 cut(s) 582, 675
DpnI GATC 5 cut(s) 9, 382, 587, 746, 858
DpnII GATC 5 cut(s) 7, 380, 585, 744, 856
Eam1104I CTCTTC 4 cut(s) 504, 783, 891, 948
EarI CTCTTC 4 cut(s) 504, 783, 891, 948
Eco130I CCWWGG 1 cut(s) 873
Eco57I CTGAAG 1 cut(s) 533
EcoRI GAATTC 2 cut(s) 293, 395
EcoT14I CCWWGG 1 cut(s) 873
ErhI CCWWGG 1 cut(s) 873
FaeI CATG 6 cut(s) 95, 509, 694, 910, 1001, 1011
FaqI GGGAC 2 cut(s) 78, 384
FatI CATG 6 cut(s) 91, 505, 690, 906, 997, 1007
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 3 cut(s) 458, 737, 754
FokI GGATG 3 cut(s) 515, 542, 1000
Fsp4HI GCNGC 3 cut(s) 458, 737, 754
FspBI CTAG 3 cut(s) 386, 740, 854
GlaI GCGC 1 cut(s) 522
GluI GCNGC 3 cut(s) 458, 737, 754
HapII CCGG 1 cut(s) 82
HgaI GACGC 2 cut(s) 643, 878
HhaI GCGC 1 cut(s) 523
Hin1I GRCGYC 1 cut(s) 870
Hin1II CATG 6 cut(s) 95, 509, 694, 910, 1001, 1011
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 3 cut(s) 421, 545, 608
HinfI GANTC 2 cut(s) 171, 622
HpaII CCGG 1 cut(s) 82
HphI GGTGA 5 cut(s) 296, 446, 616, 663, 893
Hpy166II GTNNAC 3 cut(s) 211, 516, 868
Hpy188I TCNGA 5 cut(s) 324, 552, 585, 592, 627
Hpy188III TCNNGA 7 cut(s) 82, 298, 400, 563, 854, 907, 929
Hpy8I GTNNAC 3 cut(s) 211, 516, 868
Hpy99I CGWCG 1 cut(s) 872
HpyAV CCTTC 5 cut(s) 184, 569, 872, 955, 974
HpyCH4III ACNGT 3 cut(s) 269, 785, 850
HpyCH4V TGCA 5 cut(s) 56, 95, 505, 756, 970
HpyF3I CTNAG 2 cut(s) 582, 675
Hsp92I GRCGYC 1 cut(s) 870
Hsp92II CATG 6 cut(s) 95, 509, 694, 910, 1001, 1011
HspAI GCGC 1 cut(s) 521
Kpn2I TCCGGA 1 cut(s) 81
Kzo9I GATC 5 cut(s) 7, 380, 585, 744, 856
LmnI GCTCC 1 cut(s) 1006
Lsp1109I GCAGC 3 cut(s) 469, 723, 740
LweI GCATC 1 cut(s) 963
MaeI CTAG 3 cut(s) 386, 740, 854
MaeIII GTNAC 1 cut(s) 140
MalI GATC 5 cut(s) 9, 382, 587, 746, 858
MboI GATC 5 cut(s) 7, 380, 585, 744, 856
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 25
MmeI TCCRAC 3 cut(s) 302, 334, 431
MnlI CCTC 7 cut(s) 36, 282, 361, 447, 826, 892, 951
MroI TCCGGA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 676
MspI CCGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 521
NdeII GATC 5 cut(s) 7, 380, 585, 744, 856
NlaIII CATG 6 cut(s) 95, 509, 694, 910, 1001, 1011
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 2 cut(s) 95, 1001
OliI CACNNNNGTG 1 cut(s) 676
PagI TCATGA 1 cut(s) 906
PfeI GAWTC 2 cut(s) 171, 622
PkrI GCNGC 3 cut(s) 459, 738, 755
PspN4I GGNNCC 1 cut(s) 24
PstI CTGCAG 2 cut(s) 58, 758
PsuI RGATCY 1 cut(s) 585
RsaI GTAC 3 cut(s) 52, 517, 996
RsaNI GTAC 3 cut(s) 51, 516, 995
RseI CAYNNNNRTG 1 cut(s) 676
SalI GTCGAC 1 cut(s) 866
SatI GCNGC 3 cut(s) 458, 737, 754
Sau3AI GATC 5 cut(s) 7, 380, 585, 744, 856
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 1 cut(s) 963
SfcI CTRYAG 3 cut(s) 54, 754, 826
SmiMI CAYNNNNRTG 1 cut(s) 676
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
SpeI ACTAGT 1 cut(s) 385
SsiI CCGC 1 cut(s) 519
SspMI CTAG 3 cut(s) 386, 740, 854
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 3 cut(s) 269, 785, 850
TaqI TCGA 2 cut(s) 867, 946
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 2 cut(s) 171, 622
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 457, 736, 753
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 5 cut(s) 335, 408, 522, 635, 902
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 258
XapI RAATTY 4 cut(s) 124, 293, 337, 395
XbaI TCTAGA 1 cut(s) 853
XceI RCATGY 2 cut(s) 95, 1001
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 3 cut(s) 386, 740, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.