RchiOBHm_Chr5g0078781

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84560104 .. 84561164
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35327

Sequence Viewer

Length: 744 bp
ATGACGATTGATTCAGGTCTGGGTGTATGTGGCTACAACAGTATCTACACTCTCCAAGATCAAAGGCCAACATGTGCATGCCCAAAAGGATACTCTTTACTGGATCCGAATGATCTGTATGGGAATTGCAAACCGGATTTCATACAAGGCTGTGAAGAAGATAAGCTGAGTCCCACAAATGATATATATGAAGTTCAAATGCTGACCAATACGGATTGGCCATTGTCAGATTTTATGCAGTTAAATCCTTCTACTCCAGAGAGTTGCAATCAATCTTGCTTTGAAGATTGTTTGTGTGCTGTTGCTATTTACAGGGTTGAAACCTGTTGGAAAAAGAAGTTACCTCTTTCAAATGGGAGAGTGGATAACGGGCTTAATTCACAGGCCTTCATCAAAGTCAGGAAGGGGTGTTTTGGAGTTGTTTACAAAGGAATATTGCAAATTGGTTCTGGTGTCCCAGTGGCAGTGAAGAAGCTAAATTTTGTGGTACAAGATAGTGAGAAGGAATTCAAGACGGAACTGAACATAATTGGTCAGACACATCACAAGAATCTGGTTAGACTTGTTGGATATTGTGACGAGGGACAAGAGCGGTTACTAGTATATGAGTTCTTGAGCAATGGCACATTAGCAAACTTTCTTTTTGCTGAACCAAGTTGGAAGCAAAGGATTGATATTGCTTATGGAGTTGCTAAAGGACTTCTGTACTTACATGAAGAGTGCAACACCCAGATCATCCATTGA

Protein Analysis

247

Amino Acids

27.75

Weight (kDa)

5.29

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 133 - 240 6.6e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 135 - 247 4.4e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 592
AciI CCGC 1 cut(s) 592
AclWI GGATC 2 cut(s) 98, 111
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 2 cut(s) 478, 506
AfaI GTAC 2 cut(s) 489, 707
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 5 cut(s) 197, 284, 320, 351, 511
AhlI ACTAGT 1 cut(s) 598
AluBI AGCT 2 cut(s) 166, 475
AluI AGCT 2 cut(s) 166, 475
AlwI GGATC 2 cut(s) 98, 111
AoxI GGCC 3 cut(s) 65, 218, 384
ApoI RAATTY 2 cut(s) 478, 506
Asp700I GAANNNNTTC 1 cut(s) 506
BaeI ACNNNNGTAYC 2 cut(s) 25, 58
BalI TGGCCA 1 cut(s) 220
BamHI GGATCC 1 cut(s) 103
BciVI GTATCC 1 cut(s) 83
BcuI ACTAGT 1 cut(s) 598
BfaI CTAG 1 cut(s) 599
BfuI GTATCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 634
BsaWI WCCGGW 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 105, 458
Bse3DI GCAATG 1 cut(s) 625
BseGI GGATG 1 cut(s) 735
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 2 cut(s) 105, 458
BshFI GGCC 3 cut(s) 67, 220, 386
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 3 cut(s) 156, 440, 597
BsmFI GGGAC 3 cut(s) 156, 440, 597
BsnI GGCC 3 cut(s) 67, 220, 386
Bsp143I GATC 4 cut(s) 58, 103, 112, 732
BspACI CCGC 1 cut(s) 592
BspANI GGCC 3 cut(s) 67, 220, 386
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 2 cut(s) 98, 111
BsrBI CCGCTC 1 cut(s) 592
BsrDI GCAATG 1 cut(s) 625
BsrI ACTGG 2 cut(s) 105, 458
BssMI GATC 4 cut(s) 58, 103, 112, 732
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 711
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 735
BstKTI GATC 4 cut(s) 61, 106, 115, 735
BstMBI GATC 4 cut(s) 58, 103, 112, 732
BstNSI RCATGY 2 cut(s) 75, 81
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 3 cut(s) 67, 220, 386
BtsCI GGATG 1 cut(s) 735
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 465, 471
Cac8I GCNNGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 488, 706
CviAII CATG 3 cut(s) 72, 78, 713
CviJI RGCY 8 cut(s) 33, 67, 150, 166, 220, 373, 386, 475
CviKI_1 RGCY 8 cut(s) 33, 67, 150, 166, 220, 373, 386, 475
CviQI GTAC 2 cut(s) 488, 706
DdeI CTNAG 1 cut(s) 167
DpnI GATC 4 cut(s) 60, 105, 114, 734
DpnII GATC 4 cut(s) 58, 103, 112, 732
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Eco147I AGGCCT 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 506
FaeI CATG 3 cut(s) 75, 81, 716
FaqI GGGAC 3 cut(s) 156, 440, 597
FatI CATG 3 cut(s) 71, 77, 712
FokI GGATG 1 cut(s) 722
FspBI CTAG 1 cut(s) 599
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 3 cut(s) 67, 220, 386
HapII CCGG 1 cut(s) 134
Hin1II CATG 3 cut(s) 75, 81, 716
HinfI GANTC 3 cut(s) 11, 169, 550
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 3 cut(s) 108, 229, 537
Hpy188III TCNNGA 4 cut(s) 257, 400, 511, 613
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 4 cut(s) 258, 397, 397, 496
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 6 cut(s) 77, 129, 238, 267, 439, 723
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 3 cut(s) 75, 81, 716
Kzo9I GATC 4 cut(s) 58, 103, 112, 732
MaeI CTAG 1 cut(s) 599
MaeIII GTNAC 3 cut(s) 339, 575, 594
MalI GATC 4 cut(s) 60, 105, 114, 734
MbiI CCGCTC 1 cut(s) 592
MboI GATC 4 cut(s) 58, 103, 112, 732
MboII GAAGA 5 cut(s) 167, 170, 296, 481, 728
MflI RGATCY 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 6 cut(s) 124, 376, 441, 478, 506, 528
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 3 cut(s) 308, 547, 638
MnlI CCTC 2 cut(s) 354, 574
Mox20I TGGCCA 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 506
MscI TGGCCA 1 cut(s) 220
MseI TTAA 2 cut(s) 242, 375
MslI CAYNNNNRTG 1 cut(s) 76
Msp20I TGGCCA 1 cut(s) 220
MspI CCGG 1 cut(s) 134
NdeII GATC 4 cut(s) 58, 103, 112, 732
NlaIII CATG 3 cut(s) 75, 81, 716
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 2 cut(s) 75, 81
PaeI GCATGC 1 cut(s) 81
PceI AGGCCT 1 cut(s) 386
PciI ACATGT 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 11, 550
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PscI ACATGT 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 105
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 2 cut(s) 489, 707
RsaNI GTAC 2 cut(s) 488, 706
RseI CAYNNNNRTG 1 cut(s) 76
SaqAI TTAA 2 cut(s) 242, 375
Sau3AI GATC 4 cut(s) 58, 103, 112, 732
SchI GAGTC 1 cut(s) 178
SetI ASST 5 cut(s) 19, 168, 326, 346, 477
SmiMI CAYNNNNRTG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
SpeI ACTAGT 1 cut(s) 598
SphI GCATGC 1 cut(s) 81
Sse9I AATT 6 cut(s) 124, 376, 441, 478, 506, 528
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 1 cut(s) 592
SspI AATATT 1 cut(s) 435
SspMI CTAG 1 cut(s) 599
StuI AGGCCT 1 cut(s) 386
TaaI ACNGT 1 cut(s) 41
TasI AATT 6 cut(s) 124, 376, 441, 478, 506, 528
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 2 cut(s) 11, 550
Tru1I TTAA 2 cut(s) 242, 375
Tru9I TTAA 2 cut(s) 242, 375
TscAI CASTG 2 cut(s) 465, 471
TseFI GTSAC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 4 cut(s) 130, 204, 379, 729
TspGWI ACGGA 2 cut(s) 227, 530
TspRI CASTG 2 cut(s) 465, 471
XapI RAATTY 2 cut(s) 478, 506
XceI RCATGY 2 cut(s) 75, 81
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.