RchiOBHm_Chr5g0077681

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
83571421 .. 83571918
498 bp
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UTR
Exon/CDS
Intron
PRQ35224

Sequence Viewer

Length: 498 bp
ATGAAGCCTCAAAACATTCTTCTAGATGACTCCTTCACATCAAGAATCTCCGATTTTGGACTAGCCAAGCTTTTGAGAACAGACCAGACTCAAACCACAACGGGAATCAGGGGAACAAGAGGGTATGTGGCAACTGAATGGTTCAAAAACACACCTATCACAGTGAAGGTGGATGTTTACAGCTATGGCATTTTGTTATTAGAGATTATTTGCTGCAGAAATCATTTTGAAGAACATGCTGAGAATGAAGATCAAATGATACTAGCTGATTGGGCCTCTGGTTGCTACAACCAAATGAAATTGCATCTGTTAGTAGAGAATGATCATGAGGCAATGAACAACATCACAAATGTGGAGAAATGCATGATGATCGCATTGTCGTGCATTCAAGAGGATCCAACACTGAGACCCACCATGAAGAAAGTCATACTAAAGCTTGAAGGAATTGTCGAAGTCTCAGCTCCGCCAGATCCATCCTCATTCGCAAACTCGACTTAA

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

5.04

Isoelectric Point (pI)

26.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 142 1.3e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 145 9.6e-18 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 464
AclWI GGATC 3 cut(s) 389, 402, 464
AgsI TTSAA 4 cut(s) 145, 230, 389, 440
AleI CACNNNNGTG 1 cut(s) 350
AluBI AGCT 5 cut(s) 70, 183, 266, 436, 461
AluI AGCT 5 cut(s) 70, 183, 266, 436, 461
Alw26I GTCTC 2 cut(s) 400, 460
AlwI GGATC 3 cut(s) 389, 402, 464
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 273
BamHI GGATCC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 481
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 400, 460
BfaI CTAG 3 cut(s) 23, 62, 263
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 396
BmsI GCATC 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 339
BseGI GGATG 2 cut(s) 178, 473
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 231, 395, 471
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 400, 460
BsmI GAATGC 1 cut(s) 384
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 400
Bsp143I GATC 5 cut(s) 250, 322, 369, 394, 469
BspACI CCGC 1 cut(s) 464
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 3 cut(s) 232, 396, 470
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 218
BspPI GGATC 3 cut(s) 389, 402, 464
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 339
BssMI GATC 5 cut(s) 250, 322, 369, 394, 469
Bst4CI ACNGT 1 cut(s) 163
BstDEI CTNAG 3 cut(s) 240, 404, 457
BstF5I GGATG 2 cut(s) 178, 473
BstKTI GATC 5 cut(s) 253, 325, 372, 397, 472
BstMAI GTCTC 2 cut(s) 400, 460
BstMBI GATC 5 cut(s) 250, 322, 369, 394, 469
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 394, 469
BstYI RGATCY 2 cut(s) 394, 469
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 178, 473
BtsIMutI CAGTG 2 cut(s) 168, 401
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 4 cut(s) 236, 326, 364, 415
CviJI RGCY 8 cut(s) 7, 65, 70, 183, 266, 275, 436, 461
CviKI_1 RGCY 8 cut(s) 7, 65, 70, 183, 266, 275, 436, 461
DdeI CTNAG 3 cut(s) 240, 404, 457
DpnI GATC 5 cut(s) 252, 324, 371, 396, 471
DpnII GATC 5 cut(s) 250, 322, 369, 394, 469
EciI GGCGGA 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 365
FaeI CATG 4 cut(s) 239, 329, 367, 418
FaiI YATR 7 cut(s) 126, 186, 237, 327, 365, 416, 428
FatI CATG 4 cut(s) 235, 325, 363, 414
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 2 cut(s) 185, 460
Fsp4HI GCNGC 1 cut(s) 214
FspBI CTAG 3 cut(s) 23, 62, 263
GluI GCNGC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 275
Hin1II CATG 4 cut(s) 239, 329, 367, 418
HindIII AAGCTT 2 cut(s) 68, 434
HinfI GANTC 4 cut(s) 29, 45, 88, 105
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 4 cut(s) 23, 42, 326, 389
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 43, 160, 434
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 216, 304, 363, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 3 cut(s) 240, 404, 457
Hsp92II CATG 4 cut(s) 239, 329, 367, 418
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 5 cut(s) 250, 322, 369, 394, 469
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 4 cut(s) 94, 98, 264, 480
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 313
MaeI CTAG 3 cut(s) 23, 62, 263
MalI GATC 5 cut(s) 252, 324, 371, 396, 471
MboI GATC 5 cut(s) 250, 322, 369, 394, 469
MboII GAAGA 4 cut(s) 11, 242, 260, 430
MflI RGATCY 2 cut(s) 394, 469
MluCI AATT 2 cut(s) 299, 444
MlyI GAGTC 2 cut(s) 23, 82
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 6 cut(s) 18, 113, 286, 322, 385, 487
Mph1103I ATGCAT 1 cut(s) 365
MseI TTAA 1 cut(s) 496
MslI CAYNNNNRTG 2 cut(s) 350, 379
Mva1269I GAATGC 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 5 cut(s) 250, 322, 369, 394, 469
NlaIII CATG 4 cut(s) 239, 329, 367, 418
NlaIV GGNNCC 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 1 cut(s) 239
OliI CACNNNNGTG 1 cut(s) 350
PagI TCATGA 1 cut(s) 325
PctI GAATGC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 45, 105
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 2 cut(s) 23, 82
PpsI GAGTC 2 cut(s) 23, 82
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 273
PstI CTGCAG 1 cut(s) 218
PsuI RGATCY 2 cut(s) 394, 469
RseI CAYNNNNRTG 2 cut(s) 350, 379
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 5 cut(s) 250, 322, 369, 394, 469
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 2 cut(s) 23, 82
SetI ASST 7 cut(s) 72, 157, 171, 185, 268, 438, 463
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 350, 379
Sse9I AATT 2 cut(s) 299, 444
SsiI CCGC 1 cut(s) 464
SspMI CTAG 3 cut(s) 23, 62, 263
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 450, 491
TasI AATT 2 cut(s) 299, 444
TfiI GAWTC 2 cut(s) 45, 105
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 2 cut(s) 168, 408
TseI GCWGC 1 cut(s) 213
TspDTI ATGAA 5 cut(s) 17, 261, 311, 350, 431
TspRI CASTG 2 cut(s) 168, 408
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 239
XspI CTAG 3 cut(s) 23, 62, 263
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.