Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Forward (+)

83586531 .. 83587187

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGCAACGGTACACTAGCAAGCTTCCTTTTCGGAGACACAAGGCCAAATTGGTGCCAAAGAAGGCAAATTGCATTGGGTATTGCCAGAGGGCTCTTGTATTTGCATGAGGAGTGCAGCAACCAAATTGTACATTGCGACATTAAGCCTCAAAACATTCTTCTAGACGACTCATTCACAGCAAGGATCTCCGATTTTGGATTAGCCAAGCTTTTGAGACTGGACCAGACTCGAACTATTACAGGAATTAGGGGAACAAAAGGGTATGTGGCACCCGAATGGTTCAAGAACTTACCTATCACAGCAAAGGTGGATGTGTACAGCTTTGGTATTTTGTTGTTAGAAATCATTTGCTGCAGGAAGAAATTCGACGAAGAAGCAGAAGATGCAGTTCAAATAATACTTGCTGACTGGGCATATGACTGCTATAAGCATAAGAAACTACATCTTTTGTTGGAGAAAAATGATGAGGCAATTGAAGACATCAAGATGATGGAGAAGTACGTGATGATCGCAATGTGGTGCATTCAGGAAAATCCATCACTCAGAACCACCATGAAGAAAACCTTTCAAATGCTTGAAGGAACTGTCGAAGTCTCAAAACCACCAGATCCATCTGCTTACAGAAGTTCCATACTTTTAGACCCTGCACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

218

Amino Acids

24.99

Weight (kDa)

6.22

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 191	9.6e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	15 - 191	3.4e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	54, 271
AclWI	GGATC	2 cut(s)	194, 605
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	4 cut(s)	13, 132, 320, 503
AgsI	TTSAA	5 cut(s)	286, 395, 479, 572, 581
AluBI	AGCT	3 cut(s)	24, 211, 324
AluI	AGCT	3 cut(s)	24, 211, 324
Alw26I	GTCTC	3 cut(s)	30, 211, 601
AlwI	GGATC	2 cut(s)	194, 605
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	117, 354
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	2 cut(s)	54, 271
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	129, 341
BccI	CCATC	3 cut(s)	487, 547, 622
BcoDI	GTCTC	3 cut(s)	30, 211, 601
BfaI	CTAG	2 cut(s)	17, 164
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	2 cut(s)	118, 355
BlsI	GCNGC	2 cut(s)	119, 356
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	56, 273
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	225, 416
Bse3DI	GCAATG	2 cut(s)	133, 522
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	2 cut(s)	133, 522
BseMII	CTCAG	1 cut(s)	559
BseNI	ACTGG	2 cut(s)	225, 416
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	129, 341
BsgI	GTGCAG	2 cut(s)	136, 633
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	2 cut(s)	54, 271
BsmAI	GTCTC	3 cut(s)	30, 211, 601
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	2 cut(s)	130, 318
Bsp143I	GATC	3 cut(s)	186, 510, 610
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	56, 273
BspMAI	CTGCAG	1 cut(s)	359
BspPI	GGATC	2 cut(s)	194, 605
BspT107I	GGYRCC	2 cut(s)	54, 271
BsrDI	GCAATG	2 cut(s)	133, 522
BsrGI	TGTACA	2 cut(s)	130, 318
BsrI	ACTGG	2 cut(s)	225, 416
BssMI	GATC	3 cut(s)	186, 510, 610
Bst4CI	ACNGT	2 cut(s)	11, 589
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstAUI	TGTACA	2 cut(s)	130, 318
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	545
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	3 cut(s)	189, 513, 613
BstMAI	GTCTC	3 cut(s)	30, 211, 601
BstMBI	GATC	3 cut(s)	186, 510, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 413
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	129, 341
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	2 cut(s)	186, 610
BstYI	RGATCY	2 cut(s)	186, 610
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	4 cut(s)	12, 131, 319, 502
CviAII	CATG	2 cut(s)	107, 556
CviJI	RGCY	7 cut(s)	24, 46, 94, 148, 206, 211, 324
CviKI_1	RGCY	7 cut(s)	24, 46, 94, 148, 206, 211, 324
CviQI	GTAC	4 cut(s)	12, 131, 319, 502
DdeI	CTNAG	1 cut(s)	545
DpnI	GATC	3 cut(s)	188, 512, 612
DpnII	GATC	3 cut(s)	186, 510, 610
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	2 cut(s)	110, 559
FaiI	YATR	8 cut(s)	108, 267, 418, 420, 429, 435, 557, 635
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FatI	CATG	2 cut(s)	106, 555
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	118, 355
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	118, 355
FspBI	CTAG	2 cut(s)	17, 164
GluI	GCNGC	2 cut(s)	118, 355
HaeIII	GGCC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	110, 559
HindIII	AAGCTT	2 cut(s)	22, 209
HinfI	GANTC	2 cut(s)	170, 229
Hpy166II	GTNNAC	2 cut(s)	14, 319
Hpy188I	TCNGA	3 cut(s)	35, 193, 548
Hpy188III	TCNNGA	4 cut(s)	164, 286, 487, 530
Hpy8I	GTNNAC	2 cut(s)	14, 319
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	57, 575
HpyCH4III	ACNGT	2 cut(s)	11, 589
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	7 cut(s)	74, 106, 117, 357, 389, 525, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 413
HpyF3I	CTNAG	1 cut(s)	545
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	2 cut(s)	110, 559
Kzo9I	GATC	3 cut(s)	186, 510, 610
LpnPI	CCDG	8 cut(s)	100, 206, 228, 239, 343, 397, 515, 621
Lsp1109I	GCAGC	2 cut(s)	129, 341
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	17, 164
MaeII	ACGT	1 cut(s)	504
MalI	GATC	3 cut(s)	188, 512, 612
MboI	GATC	3 cut(s)	186, 510, 610
MboII	GAAGA	6 cut(s)	152, 373, 386, 395, 491, 571
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	2 cut(s)	186, 610
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	6 cut(s)	49, 69, 126, 246, 365, 474
MlyI	GAGTC	2 cut(s)	164, 223
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	4 cut(s)	83, 103, 159, 463
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	277, 488
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	525
MwoI	GCNNNNNNNGC	2 cut(s)	386, 413
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	3 cut(s)	186, 510, 610
NlaIII	CATG	2 cut(s)	110, 559
NlaIV	GGNNCC	2 cut(s)	56, 273
PctI	GAATGC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	119, 356
PleI	GAGTC	2 cut(s)	164, 223
PpsI	GAGTC	2 cut(s)	164, 223
Ppu21I	YACGTR	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	56, 273
PspPI	GGNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	186, 610
RsaI	GTAC	4 cut(s)	13, 132, 320, 503
RsaNI	GTAC	4 cut(s)	12, 131, 319, 502
RseI	CAYNNNNRTG	2 cut(s)	277, 488
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	118, 355
Sau3AI	GATC	3 cut(s)	186, 510, 610
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	164, 223
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	7 cut(s)	26, 213, 298, 312, 326, 507, 569
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	277, 488
Sse9I	AATT	6 cut(s)	49, 69, 126, 246, 365, 474
SspMI	CTAG	2 cut(s)	17, 164
TaaI	ACNGT	2 cut(s)	11, 589
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	232, 369, 591
TasI	AATT	6 cut(s)	49, 69, 126, 246, 365, 474
TatI	WGTACW	2 cut(s)	130, 318
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	2 cut(s)	117, 354
TspDTI	ATGAA	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	365
XbaI	TCTAGA	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	2 cut(s)	17, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.