Rmu_sc0015122.1_g000002

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015122.1
OG0000130
Physical Location & Seq
Forward (+)
9943 .. 10581
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015122.1_g000002.1.cds

Sequence Viewer

Length: 639 bp
atgagcaatggaacactggctagctttctgtttgggatttcaaggcctgattggaacaaacggatccaaattgcgtttggtattgccagagggctaatgtacttacacgacgagtgtagcactcagatcatccactgtgatatcaaaccccccaacatacttctcgatgattcatatacagcaaggatttcggatttcggattggcaaagcttctgctaagtgatcaaactctgactcatacagtcattagagggaccagagggtatgttgcaccagaatggttcagaaatactccagttactgcaaaggttgatgtttacagttatggggtgatgctgttggagattatctgttgcaggaggagcctcgaaatggaaagggaaaatgaagaagaggcgatactaactgactgggtttacgattgctacgcgcaaaggagattaaacaagatgatcgaggacgatgaggaggccagaaatgacatgaaaaggttggagaggctagtaatggtggcaatttggtgcatacaagaggatccatctttgagacccaccatgaagaaggttacacaaatgctcgaaggagtggttgatgtatctgtacctccaagtccttctccttttagttcaatttgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

212

Amino Acids

24.31

Weight (kDa)

5.18

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 431
AclWI GGATC 4 cut(s) 58, 71, 530, 543
AfaI GTAC 2 cut(s) 101, 603
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 2 cut(s) 42, 630
AluBI AGCT 2 cut(s) 24, 211
AluI AGCT 2 cut(s) 24, 211
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 4 cut(s) 58, 71, 530, 543
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 2 cut(s) 44, 471
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 343
AsuNHI GCTAGC 1 cut(s) 20
AvaII GGWCC 1 cut(s) 255
BamHI GGATCC 2 cut(s) 63, 535
BarI GAAGNNNNNNTAC 2 cut(s) 384, 416
BccI CCATC 1 cut(s) 547
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 2 cut(s) 21, 503
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 4 cut(s) 65, 256, 365, 537
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 324
BmtI GCTAGC 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 541
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 3 cut(s) 21, 296, 416
Bse3DI GCAATG 1 cut(s) 13
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 3 cut(s) 21, 296, 416
BseRI GAGGAG 2 cut(s) 376, 482
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 2 cut(s) 46, 473
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 2 cut(s) 46, 473
Bso31I GGTCTC 1 cut(s) 541
Bsp143I GATC 5 cut(s) 63, 126, 223, 453, 535
BspANI GGCC 2 cut(s) 46, 473
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 4 cut(s) 65, 256, 365, 537
BspOI GCTAGC 1 cut(s) 24
BspPI GGATC 4 cut(s) 58, 71, 530, 543
BspTNI GGTCTC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 13
BsrI ACTGG 3 cut(s) 21, 296, 416
BssMI GATC 5 cut(s) 63, 126, 223, 453, 535
Bst4CI ACNGT 3 cut(s) 137, 244, 323
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 123, 218
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 5 cut(s) 66, 129, 226, 456, 538
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 5 cut(s) 63, 126, 223, 453, 535
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstUI CGCG 1 cut(s) 431
BstX2I RGATCY 2 cut(s) 63, 535
BstYI RGATCY 2 cut(s) 63, 535
BsuRI GGCC 2 cut(s) 46, 473
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 14, 133
Cac8I GCNNGC 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 100, 602
CviAII CATG 2 cut(s) 484, 556
CviJI RGCY 8 cut(s) 20, 24, 46, 94, 211, 366, 473, 502
CviKI_1 RGCY 8 cut(s) 20, 24, 46, 94, 211, 366, 473, 502
CviQI GTAC 2 cut(s) 100, 602
DdeI CTNAG 2 cut(s) 123, 218
DpnI GATC 5 cut(s) 65, 128, 225, 455, 537
DpnII GATC 5 cut(s) 63, 126, 223, 453, 535
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco147I AGGCCT 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 541
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 255
EcoRV GATATC 1 cut(s) 142
FaeI CATG 2 cut(s) 487, 559
FaiI YATR 9 cut(s) 158, 175, 177, 240, 267, 327, 485, 527, 557
FaqI GGGAC 1 cut(s) 268
FatI CATG 2 cut(s) 483, 555
FbaI TGATCA 1 cut(s) 223
FokI GGATG 1 cut(s) 116
FspBI CTAG 2 cut(s) 21, 503
GlaI GCGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 46, 473
HhaI GCGC 1 cut(s) 433
Hin1II CATG 2 cut(s) 487, 559
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 170, 235
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 319, 418
Hpy188I TCNGA 5 cut(s) 126, 193, 200, 234, 287
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 319, 418
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 556, 575, 624
HpyCH4III ACNGT 3 cut(s) 137, 244, 323
HpyCH4V TGCA 4 cut(s) 272, 305, 357, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 2 cut(s) 123, 218
Hsp92II CATG 2 cut(s) 487, 559
HspAI GCGC 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 5 cut(s) 63, 126, 223, 453, 535
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 9 cut(s) 2, 60, 100, 271, 288, 309, 343, 397, 487
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 21, 503
MaeIII GTNAC 2 cut(s) 298, 565
MalI GATC 5 cut(s) 65, 128, 225, 455, 537
MboI GATC 5 cut(s) 63, 126, 223, 453, 535
MboII GAAGA 3 cut(s) 401, 404, 571
MflI RGATCY 2 cut(s) 63, 535
MluCI AATT 3 cut(s) 69, 516, 630
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 2 cut(s) 321, 474
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 1 cut(s) 277
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 363
NdeII GATC 5 cut(s) 63, 126, 223, 453, 535
NheI GCTAGC 1 cut(s) 20
NlaIII CATG 2 cut(s) 487, 559
NlaIV GGNNCC 4 cut(s) 65, 256, 365, 537
PceI AGGCCT 1 cut(s) 46
PfeI GAWTC 1 cut(s) 170
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PspN4I GGNNCC 4 cut(s) 65, 256, 365, 537
PspPI GGNCC 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 2 cut(s) 63, 535
RsaI GTAC 2 cut(s) 101, 603
RsaNI GTAC 2 cut(s) 100, 602
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 1 cut(s) 443
Sau3AI GATC 5 cut(s) 63, 126, 223, 453, 535
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 229
SetI ASST 6 cut(s) 26, 213, 312, 494, 567, 607
SfaNI GCATC 1 cut(s) 324
SinI GGWCC 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 277
Sse9I AATT 3 cut(s) 69, 516, 630
SseBI AGGCCT 1 cut(s) 46
SspMI CTAG 2 cut(s) 21, 503
StuI AGGCCT 1 cut(s) 46
TaaI ACNGT 3 cut(s) 137, 244, 323
TaqI TCGA 4 cut(s) 165, 369, 456, 579
TasI AATT 3 cut(s) 69, 516, 630
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 2 cut(s) 21, 140
TspDTI ATGAA 4 cut(s) 162, 402, 500, 572
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 2 cut(s) 21, 140
VpaK11BI GGWCC 1 cut(s) 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XspI CTAG 2 cut(s) 21, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.