pycom03g01720

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
1252155 .. 1252574
420 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01720.1

Sequence Viewer

Length: 420 bp
ATGAATCAGAACCAGATTCATACTGCCATTCGAGGAACAAAAGGTAATGTTGCACCTGAGTGGTTTCATATGTTGCCAATCACTACCAAAGTTGACGTGTACAGCTTCGGCGTTGTACTGCTAGAGATCATTTTTTGCAAGAGAAGCGCTGATATGGAAAATAACTGCAAAGAGAAAGAAAATTTCAGAGATTGGGTGTACAATTGCTACGTTAATGGAGAATTATATGTTGTAGTAGATTATGAACCCCAGACCTTTCTTGAACGATGGAAACTGCAAAATTTCGTGATGGCTGCATTTTGGTGCATTCAAGAAGACCCGTCTCTTAGGCCTACTATGAAGAAGGTTGTGCAGATGCTTGAAGGAAAAGTGGAAGTACAAGTTCCACCGTATCCATTCCCCTATACCAGAACTGGTTAA

Protein Analysis

140

Amino Acids

16.38

Weight (kDa)

6.12

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 6 - 118 4.1e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 120 9.2e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 181, 280
AfaI GTAC 4 cut(s) 101, 117, 200, 378
AfeI AGCGCT 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 3 cut(s) 263, 311, 362
AjiI CACGTC 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 58
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 327
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 2 cut(s) 181, 280
AspLEI GCGC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 280
BccI CCATC 2 cut(s) 261, 283
BciVI GTATCC 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 150
BfuI GTATCC 1 cut(s) 402
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmgBI CACGTC 1 cut(s) 97
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 321
Bse1I ACTGG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 418
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 327
BsmBI CGTCTC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 1 cut(s) 331
Bsp1407I TGTACA 2 cut(s) 99, 198
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 49
BsrGI TGTACA 2 cut(s) 99, 198
BsrI ACTGG 1 cut(s) 418
BssMI GATC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 390
BstAUI TGTACA 2 cut(s) 99, 198
BstDEI CTNAG 2 cut(s) 57, 326
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 1 cut(s) 331
BtrI CACGTC 1 cut(s) 97
CfoI GCGC 1 cut(s) 149
Csp6I GTAC 4 cut(s) 100, 116, 199, 377
CviJI RGCY 3 cut(s) 105, 293, 331
CviKI_1 RGCY 3 cut(s) 105, 293, 331
CviQI GTAC 4 cut(s) 100, 116, 199, 377
DdeI CTNAG 2 cut(s) 57, 326
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 331
Eco47III AGCGCT 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 327
FaiI YATR 9 cut(s) 21, 69, 71, 155, 226, 228, 243, 338, 405
FauNDI CATATG 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 1 cut(s) 331
HhaI GCGC 1 cut(s) 149
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 2 cut(s) 4, 16
Hpy166II GTNNAC 3 cut(s) 94, 100, 199
Hpy188I TCNGA 2 cut(s) 9, 188
Hpy188III TCNNGA 3 cut(s) 260, 286, 311
Hpy8I GTNNAC 3 cut(s) 94, 100, 199
HpyAV CCTTC 2 cut(s) 337, 356
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 2 cut(s) 96, 210
HpyCH4V TGCA 7 cut(s) 53, 138, 168, 277, 296, 306, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 57, 326
HpySE526I ACGT 2 cut(s) 96, 210
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 4 cut(s) 26, 69, 263, 399
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 345
MaeI CTAG 1 cut(s) 122
MaeII ACGT 2 cut(s) 96, 210
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 2 cut(s) 326, 352
MfeI CAATTG 1 cut(s) 202
MluCI AATT 4 cut(s) 181, 202, 221, 280
MnlI CCTC 1 cut(s) 26
MseI TTAA 2 cut(s) 213, 418
MslI CAYNNNNRTG 2 cut(s) 58, 301
MunI CAATTG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeI CATATG 1 cut(s) 69
NdeII GATC 1 cut(s) 126
OliI CACNNNNGTG 1 cut(s) 58
PceI AGGCCT 1 cut(s) 331
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 4, 16
PkrI GCNGC 1 cut(s) 295
RsaI GTAC 4 cut(s) 101, 117, 200, 378
RsaNI GTAC 4 cut(s) 100, 116, 199, 377
RseI CAYNNNNRTG 2 cut(s) 58, 301
SaqAI TTAA 2 cut(s) 213, 418
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 126
SetI ASST 7 cut(s) 46, 58, 99, 107, 213, 257, 348
SfaNI GCATC 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 58, 301
Sse9I AATT 4 cut(s) 181, 202, 221, 280
SseBI AGGCCT 1 cut(s) 331
SspMI CTAG 1 cut(s) 122
StuI AGGCCT 1 cut(s) 331
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 2 cut(s) 99, 213
TaqI TCGA 1 cut(s) 31
TasI AATT 4 cut(s) 181, 202, 221, 280
TatI WGTACW 4 cut(s) 99, 115, 198, 376
TfiI GAWTC 2 cut(s) 4, 16
Tru1I TTAA 2 cut(s) 213, 418
Tru9I TTAA 2 cut(s) 213, 418
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 5 cut(s) 8, 17, 56, 258, 353
XapI RAATTY 2 cut(s) 181, 280
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.