Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Forward (+)

83608536 .. 83608904

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTGGCAACTGAATGGTTCAAAGATACCTATCACAGTAAAGGTGGATGTTTACAGCTACGGCATTTTGCTATTAGAGGTTATTTGCTGCAGAAATCATCTTGAAGAACATGCTGACAATGAAGATAATATGATACTAGCTGATTGGGCCTATGATTGCTACCAAATGAAATTGCATCTGTTAGTAGAGAACGATCATGAGGCGATGAACGACGTCACAAATGTGGAGAAATGCGTGATGATCGCATTGTGGTGCATTCAAGAGGATCCAACACTGAGACCCGCCATGAAGAAAGTCATACTGATGCTTGAAGGAATTGCCGAAGTCTCATCTCCGCCAGTTCCATCCTCATTTACATACTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

122

Amino Acids

13.95

Weight (kDa)

4.58

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 99	2.6e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AciI	CCGC	2 cut(s)	282, 335
AclWI	GGATC	2 cut(s)	260, 273
AcyI	GRCGYC	1 cut(s)	213
AgsI	TTSAA	4 cut(s)	21, 104, 260, 311
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	2 cut(s)	57, 140
AluI	AGCT	2 cut(s)	57, 140
Alw26I	GTCTC	2 cut(s)	271, 331
AlwI	GGATC	2 cut(s)	260, 273
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	271, 331
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	2 cut(s)	184, 294
BsaBI	GATNNNNATC	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	29
BseGI	GGATG	2 cut(s)	52, 344
BseJI	GATNNNNATC	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	271, 331
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	193, 240, 265
BspACI	CCGC	2 cut(s)	282, 335
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	92
BspPI	GGATC	2 cut(s)	260, 273
BspTNI	GGTCTC	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	193, 240, 265
BssNI	GRCGYC	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	52, 344
BstKTI	GATC	3 cut(s)	196, 243, 268
BstMAI	GTCTC	2 cut(s)	271, 331
BstMBI	GATC	3 cut(s)	193, 240, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	52, 344
BtsIMutI	CAGTG	1 cut(s)	272
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	147
CviAII	CATG	3 cut(s)	110, 197, 286
CviJI	RGCY	3 cut(s)	57, 140, 149
CviKI_1	RGCY	3 cut(s)	57, 140, 149
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	3 cut(s)	195, 242, 267
DpnII	GATC	3 cut(s)	193, 240, 265
EciI	GGCGGA	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	271
FaeI	CATG	3 cut(s)	113, 200, 289
FaiI	YATR	7 cut(s)	111, 131, 153, 198, 287, 299, 358
FatI	CATG	3 cut(s)	109, 196, 285
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	2 cut(s)	59, 331
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	113, 200, 289
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	101, 197, 260
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	90, 175, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	113, 200, 289
Kzo9I	GATC	3 cut(s)	193, 240, 265
LpnPI	CCDG	1 cut(s)	351
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	184, 294
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	3 cut(s)	195, 242, 267
MboI	GATC	3 cut(s)	193, 240, 265
MboII	GAAGA	3 cut(s)	116, 134, 301
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	2 cut(s)	170, 315
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	70, 193, 256, 358
MseI	TTAA	1 cut(s)	367
MslI	CAYNNNNRTG	3 cut(s)	221, 250, 302
Mva1269I	GAATGC	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	3 cut(s)	193, 240, 265
NlaIII	CATG	3 cut(s)	113, 200, 289
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	196
PctI	GAATGC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	265
RseI	CAYNNNNRTG	3 cut(s)	221, 250, 302
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	3 cut(s)	193, 240, 265
Sau96I	GGNCC	1 cut(s)	147
SetI	ASST	6 cut(s)	31, 45, 59, 81, 142, 216
SfaNI	GCATC	2 cut(s)	184, 294
SfcI	CTRYAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	3 cut(s)	221, 250, 302
Sse9I	AATT	2 cut(s)	170, 315
SsiI	CCGC	2 cut(s)	282, 335
SspMI	CTAG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	216
TasI	AATT	2 cut(s)	170, 315
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	135, 182, 221, 302
TspRI	CASTG	1 cut(s)	279
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	1 cut(s)	137
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.