pycom02g26630

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
24443773 .. 24444261
489 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26630.1

Sequence Viewer

Length: 489 bp
ATGTACCTGTATGAGGAGTGTAGCACGCATATCATCCATTGCGATATCAAGCCCCACAACATACTTCTAGATGATTCATTCACGGCAAGGATTTCGGACTTTGGATTGGCAAAGCTTCTGTTGATCGATCAAACTCTTACTAATACAGTTATCAGAGGGACCAGAGGATATGTTGCACCAAAATGGTTCAGGAATATTCTGATTACTGCAAAGGATGATGTTTATAGTTATGGGGTCATGTTATTGGAGATCATCTGCTGCAGGAGGAGCCTTGAAATGGAAAGGGAAAACGAAGAAGAAGTGATACTAACAGACTGGGTTTACAATTGCTACAAGGAAAAAACATTAAAAAAGCTTATAGAAGATGATGAAGAGGCAAGAAATGACATGAAAAGGTTGGAGAGGCTAGTCAGGGTTGCAAATTGGGGCATTCAAGAGGATCCATCCTTAAGACCGACAATGAAGAAGGTTACGCAGATGCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

163

Amino Acids

19.15

Weight (kDa)

5.35

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 8 - 159 9.8e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 8 - 161 5.3e-18 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 434, 447
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 13, 277
AflII CTTAAG 1 cut(s) 448
AgsI TTSAA 3 cut(s) 275, 434, 485
AluBI AGCT 2 cut(s) 115, 355
AluI AGCT 2 cut(s) 115, 355
AlwI GGATC 2 cut(s) 434, 447
ApeKI GCWGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 159
AvaII GGWCC 1 cut(s) 159
BamHI GGATCC 1 cut(s) 439
BarI GAAGNNNNNNTAC 2 cut(s) 288, 320
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 451
BceAI ACGGC 1 cut(s) 99
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BfaI CTAG 2 cut(s) 68, 407
BfmI CTRYAG 1 cut(s) 259
BfrI CTTAAG 1 cut(s) 448
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 160, 269, 441
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 277
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 37
BseCI ATCGAT 1 cut(s) 126
BseGI GGATG 3 cut(s) 33, 220, 443
BseLI CCNNNNNNNGG 2 cut(s) 13, 277
BseMI GCAATG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 2 cut(s) 29, 280
BseXI GCAGC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 126
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 13, 277
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 429
Bsp143I GATC 4 cut(s) 123, 127, 249, 439
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 160, 269, 441
BspMAI CTGCAG 1 cut(s) 263
BspPI GGATC 2 cut(s) 434, 447
BspTI CTTAAG 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 320
BssMI GATC 4 cut(s) 123, 127, 249, 439
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 11
BstF5I GGATG 3 cut(s) 33, 220, 443
BstKTI GATC 4 cut(s) 126, 130, 252, 442
BstMBI GATC 4 cut(s) 123, 127, 249, 439
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
Bsu15I ATCGAT 1 cut(s) 126
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 3 cut(s) 33, 220, 443
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 238, 388
CviJI RGCY 5 cut(s) 52, 115, 270, 355, 406
CviKI_1 RGCY 5 cut(s) 52, 115, 270, 355, 406
CviQI GTAC 1 cut(s) 4
DpnI GATC 4 cut(s) 125, 129, 251, 441
DpnII GATC 4 cut(s) 123, 127, 249, 439
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 11
EcoRV GATATC 1 cut(s) 46
FaeI CATG 2 cut(s) 241, 391
FaiI YATR 9 cut(s) 12, 30, 62, 171, 225, 231, 239, 359, 389
FaqI GGGAC 1 cut(s) 172
FatI CATG 2 cut(s) 237, 387
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 3 cut(s) 20, 227, 430
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 2 cut(s) 68, 407
GluI GCNGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 241, 391
HindIII AAGCTT 2 cut(s) 113, 353
HinfI GANTC 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 97, 155, 201
Hpy188III TCNNGA 3 cut(s) 68, 190, 434
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 176, 209, 261, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 241, 391
Kzo9I GATC 4 cut(s) 123, 127, 249, 439
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 6 cut(s) 20, 175, 175, 247, 301, 397
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 468
MaeI CTAG 2 cut(s) 68, 407
MaeIII GTNAC 1 cut(s) 469
MalI GATC 4 cut(s) 125, 129, 251, 441
MboI GATC 4 cut(s) 123, 127, 249, 439
MboII GAAGA 5 cut(s) 305, 308, 374, 383, 475
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 439
MluCI AATT 2 cut(s) 325, 421
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 7 cut(s) 7, 149, 158, 258, 367, 396, 430
MseI TTAA 2 cut(s) 347, 449
MslI CAYNNNNRTG 1 cut(s) 181
MspCI CTTAAG 1 cut(s) 448
MunI CAATTG 1 cut(s) 325
Mva1269I GAATGC 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 4 cut(s) 123, 127, 249, 439
NlaIII CATG 2 cut(s) 241, 391
NlaIV GGNNCC 3 cut(s) 160, 269, 441
PctI GAATGC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 160, 269, 441
PspPI GGNCC 1 cut(s) 159
PstI CTGCAG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 181
SaqAI TTAA 2 cut(s) 347, 449
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 4 cut(s) 123, 127, 249, 439
Sau96I GGNCC 1 cut(s) 159
SetI ASST 5 cut(s) 9, 117, 357, 398, 471
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 259
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 2 cut(s) 325, 421
SspI AATATT 1 cut(s) 196
SspMI CTAG 2 cut(s) 68, 407
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 126
TaqII GACCGA 1 cut(s) 469
TasI AATT 2 cut(s) 325, 421
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 347, 449
Tru9I TTAA 2 cut(s) 347, 449
TseI GCWGC 1 cut(s) 258
TspDTI ATGAA 4 cut(s) 66, 384, 404, 476
Vha464I CTTAAG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 11
XbaI TCTAGA 1 cut(s) 67
XspI CTAG 2 cut(s) 68, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.