Rorug05G0461900

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
63615401 .. 63616157
757 bp
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UTR
Exon/CDS
Intron
Rorug05G0461900.1

Sequence Viewer

Length: 573 bp
ATGGTGTTGTTGAAGCTGAAAGAGTTGCCACTGAAGCAGCAGCAGATCAAGAGGACAAAACTGCAAAAGAGAGAGGAGTGCCTAAACAATGAATTGCTAGCCAAGGAGATTACTGAGAATGATGAAGGAGCTCTTAAATATCTGAGAGACATCAACTTGTTTAAGATACATAATTCCAAGGGGTTCAAACTTCAGTTCTACTTTGACACCAATCCATTTTTCAAAAACTCTGTTTTGACAAAGACATATCACATGATTGATGAAGATGAACCAAATAACGTAGCAGGGACGGAGATTGAATGGTATCCAGCAAAATGCCTGACACAGAAGATTCTTAAGAAGAAGCGTAAGAAGGGATCGAAGAATTCTAAGCTTCTGACTAAAACTGAAAATTGTAAGAGTTTCTTCAATTTCTTTAGACCACCTCAAGTCTCCAAGGACGATGAAGTTATTGATGAATTTGCTGCCGAGGAACTCAAAAACCAGAAGAAACAAGACTATGATGTCGGGTCAACCATTTGTTATAAGATCATCCCACATGCAGTTTCGTGGTTTACTGGAGAAGCTTTTTAG

Protein Analysis

190

Amino Acids

22.34

Weight (kDa)

9.09

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 29 - 188 1.9e-51 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AasI GACNNNNNNGTC 1 cut(s) 503
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 2 cut(s) 364, 458
AcuI CTGAAG 2 cut(s) 53, 176
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 5 cut(s) 13, 187, 223, 299, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 4 cut(s) 16, 131, 373, 566
AluI AGCT 4 cut(s) 16, 131, 373, 566
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 141, 436
AlwI GGATC 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 37, 40, 464
ApoI RAATTY 2 cut(s) 364, 458
AsuNHI GCTAGC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 3 cut(s) 49, 52, 451
BciVI GTATCC 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 141, 436
BfaI CTAG 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 335
BfuI GTATCC 1 cut(s) 315
BisI GCNGC 3 cut(s) 38, 41, 465
BlsI GCNGC 3 cut(s) 39, 42, 466
BmtI GCTAGC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 411
BsaJI CCNNGG 4 cut(s) 102, 177, 435, 468
Bse1I ACTGG 1 cut(s) 562
BseDI CCNNGG 4 cut(s) 102, 177, 435, 468
BseGI GGATG 1 cut(s) 531
BseMII CTCAG 2 cut(s) 105, 134
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 49, 52, 451
BsiHKAI GWGCWC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 301
BsmAI GTCTC 2 cut(s) 141, 436
BsmFI GGGAC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 45, 356, 528
BspCNI CTCAG 2 cut(s) 106, 135
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 364
BspTI CTTAAG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 4 cut(s) 102, 177, 435, 468
BssMI GATC 3 cut(s) 45, 356, 528
BssT1I CCWWGG 3 cut(s) 102, 177, 435
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 114, 143, 369
BstF5I GGATG 1 cut(s) 531
BstKTI GATC 3 cut(s) 48, 359, 531
BstMAI GTCTC 2 cut(s) 141, 436
BstMBI GATC 3 cut(s) 45, 356, 528
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 542
BstV1I GCAGC 3 cut(s) 49, 52, 451
BsuI GTATCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 99
CviAII CATG 2 cut(s) 253, 539
CviJI RGCY 5 cut(s) 16, 101, 131, 373, 566
CviKI_1 RGCY 5 cut(s) 16, 101, 131, 373, 566
DdeI CTNAG 3 cut(s) 114, 143, 369
DpnI GATC 3 cut(s) 47, 358, 530
DpnII GATC 3 cut(s) 45, 356, 528
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 3 cut(s) 102, 177, 435
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 2 cut(s) 53, 176
EcoICRI GAGCTC 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 364
EcoT14I CCWWGG 3 cut(s) 102, 177, 435
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 3 cut(s) 102, 177, 435
FaeI CATG 2 cut(s) 256, 542
FaiI YATR 6 cut(s) 171, 247, 254, 501, 525, 540
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 389, 421
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 252, 538
Fnu4HI GCNGC 3 cut(s) 38, 41, 465
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 3 cut(s) 38, 41, 465
FspBI CTAG 1 cut(s) 98
GluI GCNGC 3 cut(s) 38, 41, 465
Hin1II CATG 2 cut(s) 256, 542
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HindIII AAGCTT 2 cut(s) 371, 564
HinfI GANTC 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 513, 555
Hpy188I TCNGA 2 cut(s) 144, 378
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 2 cut(s) 513, 555
HpyAV CCTTC 2 cut(s) 119, 346
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 64, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 3 cut(s) 114, 143, 369
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 256, 542
Kzo9I GATC 3 cut(s) 45, 356, 528
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 5 cut(s) 270, 321, 332, 497, 543
Lsp1109I GCAGC 3 cut(s) 49, 52, 451
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 279
MalI GATC 3 cut(s) 47, 358, 530
MboI GATC 3 cut(s) 45, 356, 528
MboII GAAGA 6 cut(s) 275, 340, 352, 373, 397, 499
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 6 cut(s) 92, 172, 364, 391, 409, 458
MnlI CCTC 4 cut(s) 45, 67, 435, 463
MseI TTAA 3 cut(s) 135, 162, 336
MspCI CTTAAG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 3 cut(s) 45, 356, 528
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 256, 542
NmeAIII GCCGAG 1 cut(s) 493
NspI RCATGY 1 cut(s) 542
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 3 cut(s) 39, 42, 466
PsiI TTATAA 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 135, 162, 336
SatI GCNGC 3 cut(s) 38, 41, 465
Sau3AI GATC 3 cut(s) 45, 356, 528
SduI GDGCHC 1 cut(s) 133
SetI ASST 6 cut(s) 18, 133, 282, 375, 427, 568
SmlI CTYRAG 2 cut(s) 335, 426
SmoI CTYRAG 2 cut(s) 335, 426
Sse9I AATT 6 cut(s) 92, 172, 364, 391, 409, 458
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 133
StyI CCWWGG 3 cut(s) 102, 177, 435
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 359
TasI AATT 6 cut(s) 92, 172, 364, 391, 409, 458
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 3 cut(s) 135, 162, 336
Tru9I TTAA 3 cut(s) 135, 162, 336
TscAI CASTG 1 cut(s) 36
TseI GCWGC 3 cut(s) 37, 40, 464
TspDTI ATGAA 6 cut(s) 105, 138, 276, 282, 459, 471
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 335
XapI RAATTY 2 cut(s) 364, 458
XceI RCATGY 1 cut(s) 542
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.