Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

84485615 .. 84487728

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG549800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTTTTATTGTATGTTCGTTTTTGCTTTCTTCATTGCTTCTGCTAACAATGTATGTGCTTGCACAAACTAATGGTAGCATAGCTGTGGGTGCTTCTCTCTCCACAGCTGGTAACTCTTCATGGCTTTCTCCCTCAGGTGATTTTGCCTTTGGGTTTCGGCAACTTGAAAACAATGATCTTTTCTTGCTTTCTATATGGTTTGCCAATATACCAGACAAAACCATAGTTTGGTATGCAAATGGGGATAAACCTGCACCTAATGGTTCAGTTGTGAATTTGACTGCTAACAGTGGGCTAGTTCTTACAAGTCCTCAGGGTGACCAGTTATGGAAATCCAATCAAACCATTGCTGGCGTTGTTGCTCATGGGGTTATGAACGATACAGGTAACTTTGTTCTGGAAAACGAGCAGTCAGCAAAGTTATGGGAGACGTTCAAGAATCCTACCGATACCATGTTGCCTGGGCAAATATTGGAAAGAGGAGGGAAGCTTTCTTCTCGAAATTCAGAGACTGACTATTCGAGTGGACACTTCCAGCTAGATTTTCAAGATGATGGGAATCTTGTGCTTAGTGGGCAAAGACCTTTTTATTCAACCGAGACTACCACAGGGAGTATTCCAGGTAGTGAAGGTCTACAGTTGGTTTTCAATGACTCAGGTAGCTTCTATATTCTGCGAGTGAATGGTGGATATTATACTTTCACAGCGGAGGAACGTGCAGCAAGGGATTACTATCTCCGGACAACTGTCAGCTTTGATGGGGTTTTGGCTCAATATTTCCTCCCAAAGAAGTTGGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

268

Amino Acids

29.22

Weight (kDa)

4.71

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	75 - 160	6.3e-16	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	637
AccIII	TCCGGA	1 cut(s)	741
AciI	CCGC	1 cut(s)	710
AcsI	RAATTY	2 cut(s)	277, 505
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	5 cut(s)	170, 439, 551, 597, 652
AjnI	CCWGG	2 cut(s)	463, 622
AluBI	AGCT	6 cut(s)	86, 110, 493, 541, 666, 756
AluI	AGCT	6 cut(s)	86, 110, 493, 541, 666, 756
Alw26I	GTCTC	3 cut(s)	425, 506, 596
AlwNI	CAGNNNCTG	1 cut(s)	515
Aor13HI	TCCGGA	1 cut(s)	741
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	2 cut(s)	277, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	505, 537
AsuHPI	GGTGA	2 cut(s)	152, 332
AxyI	CCTNAGG	2 cut(s)	136, 315
BbvI	GCAGC	1 cut(s)	734
BccI	CCATC	2 cut(s)	551, 755
BciT130I	CCWGG	2 cut(s)	465, 624
BcoDI	GTCTC	3 cut(s)	425, 506, 596
BfaI	CTAG	2 cut(s)	299, 542
BfmI	CTRYAG	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	723
BlsI	GCNGC	1 cut(s)	724
Bme1390I	CCNGG	2 cut(s)	465, 624
BmrFI	CCNGG	2 cut(s)	465, 624
BoxI	GACNNNNGTC	1 cut(s)	749
BsaBI	GATNNNNATC	2 cut(s)	561, 735
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	325
Bse21I	CCTNAGG	2 cut(s)	136, 315
Bse3DI	GCAATG	2 cut(s)	35, 348
Bse8I	GATNNNNATC	2 cut(s)	561, 735
BseAI	TCCGGA	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	465, 624
BseDI	CCNNGG	1 cut(s)	464
BseJI	GATNNNNATC	2 cut(s)	561, 735
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	35, 348
BseMII	CTCAG	3 cut(s)	150, 329, 672
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	498
BseXI	GCAGC	1 cut(s)	734
BsgI	GTGCAG	2 cut(s)	240, 741
BsiSI	CCGG	1 cut(s)	742
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	3 cut(s)	425, 506, 596
BsmBI	CGTCTC	1 cut(s)	425
Bsp13I	TCCGGA	1 cut(s)	741
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	710
BspCNI	CTCAG	3 cut(s)	149, 328, 671
BspEI	TCCGGA	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	262
BsrDI	GCAATG	2 cut(s)	35, 348
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	465, 624
Bst4CI	ACNGT	3 cut(s)	293, 642, 751
Bst6I	CTCTTC	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	63, 355
BstDEI	CTNAG	4 cut(s)	136, 315, 572, 658
BstEII	GGTNACC	1 cut(s)	320
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	3 cut(s)	425, 506, 596
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 577
BstNI	CCWGG	2 cut(s)	465, 624
BstPAI	GACNNNNGTC	1 cut(s)	749
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	2 cut(s)	463, 622
BstSFI	CTRYAG	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	734
Bsu36I	CCTNAGG	2 cut(s)	136, 315
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	63, 355
CaiI	CAGNNNCTG	1 cut(s)	515
CviAII	CATG	3 cut(s)	123, 368, 457
DdeI	CTNAG	4 cut(s)	136, 315, 572, 658
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco81I	CCTNAGG	2 cut(s)	136, 315
Eco91I	GGTNACC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	463, 622
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	3 cut(s)	126, 371, 460
FatI	CATG	3 cut(s)	122, 367, 456
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	1 cut(s)	723
Fsp4HI	GCNGC	1 cut(s)	723
FspBI	CTAG	2 cut(s)	299, 542
GluI	GCNGC	1 cut(s)	723
HapII	CCGG	1 cut(s)	742
Hin1II	CATG	3 cut(s)	126, 371, 460
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	3 cut(s)	442, 562, 656
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	2 cut(s)	152, 332
Hpy166II	GTNNAC	2 cut(s)	530, 638
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	5 cut(s)	401, 439, 501, 551, 742
Hpy8I	GTNNAC	2 cut(s)	530, 638
HpyAV	CCTTC	1 cut(s)	626
HpyCH4III	ACNGT	3 cut(s)	293, 642, 751
HpyCH4IV	ACGT	2 cut(s)	434, 718
HpyCH4V	TGCA	4 cut(s)	65, 239, 257, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 577
HpyF3I	CTNAG	4 cut(s)	136, 315, 572, 658
HpySE526I	ACGT	2 cut(s)	434, 718
Hsp92II	CATG	3 cut(s)	126, 371, 460
Kpn2I	TCCGGA	1 cut(s)	741
Kzo9I	GATC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	734
MaeI	CTAG	2 cut(s)	299, 542
MaeII	ACGT	2 cut(s)	434, 718
MaeIII	GTNAC	3 cut(s)	113, 320, 389
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	24, 111, 489
MluCI	AATT	2 cut(s)	277, 505
MlyI	GAGTC	1 cut(s)	650
MnlI	CCTC	6 cut(s)	145, 324, 476, 479, 706, 794
MroI	TCCGGA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	110, 710
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	2 cut(s)	465, 624
MvaI	CCWGG	2 cut(s)	465, 624
MwoI	GCNNNNNNNGC	2 cut(s)	92, 577
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	3 cut(s)	126, 371, 460
NmuCI	GTSAC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	442, 562
PflMI	CCANNNNNTGG	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	724
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
PshAI	GACNNNNGTC	1 cut(s)	749
Psp6I	CCWGG	2 cut(s)	463, 622
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	2 cut(s)	463, 622
PstNI	CAGNNNCTG	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	1 cut(s)	723
Sau3AI	GATC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	2 cut(s)	465, 624
SfcI	CTRYAG	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	277, 505
SsiI	CCGC	1 cut(s)	710
SspI	AATATT	2 cut(s)	474, 779
SspMI	CTAG	2 cut(s)	299, 542
StyD4I	CCNGG	2 cut(s)	463, 622
TaaI	ACNGT	3 cut(s)	293, 642, 751
TaiI	ACGT	2 cut(s)	437, 721
TaqI	TCGA	2 cut(s)	502, 524
TasI	AATT	2 cut(s)	277, 505
TfiI	GAWTC	2 cut(s)	442, 562
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	24, 111, 392
TspRI	CASTG	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	231
XapI	RAATTY	2 cut(s)	277, 505
XmiI	GTMKAC	1 cut(s)	637
XspI	CTAG	2 cut(s)	299, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.