Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

63658326 .. 63658756

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0462400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGACCACCCTGAACATAACCACCTCTCTTATTTCCTTACTCAATCTCTCTATAGATATGGTGGTCGTGGAATCACTGGGATGGCTGACGGAATCGACTATAATGCCCAAGAAGCACCGCGCCATCGCCGGCATCGGCATCATCATCACCGCCGCCGTCACTCTTTCTCCGGATCTGAAATCTAAGCCTCCGAGTAGTACCGAATCATTGAATCGGTGCTCTGCAAGCAATTCCGAATTTCAAAGGTTTTTGAGGTTGGTAAACTTTCAGAGGCTGAAGCGCGAAGCTTGGAAGAGCTTCGGGATTAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

104

Amino Acids

11.52

Weight (kDa)

10.12

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	120, 282
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	3 cut(s)	118, 150, 153
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	211, 242
AluBI	AGCT	2 cut(s)	287, 297
AluI	AGCT	2 cut(s)	287, 297
Alw21I	GWGCWC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	274
Aor13HI	TCCGGA	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	122, 282
AsuHPI	GGTGA	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	2 cut(s)	75, 131
BceAI	ACGGC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BfaI	CTAG	1 cut(s)	313
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	2 cut(s)	141, 147
BmuI	ACTGGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	169
BseGI	GGATG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	81
Bsh1236I	CGCG	2 cut(s)	120, 282
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	129, 170
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	3 cut(s)	118, 150, 153
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	120, 282
BspPI	GGATC	1 cut(s)	180
BspQI	GCTCTTC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	130, 226
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	120, 282
BstHHI	GCGC	2 cut(s)	122, 282
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 225
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	2 cut(s)	120, 282
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	130, 226
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	2 cut(s)	122, 282
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	198
CviJI	RGCY	5 cut(s)	85, 187, 274, 287, 297
CviKI_1	RGCY	5 cut(s)	85, 187, 274, 287, 297
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	296
FaiI	YATR	4 cut(s)	17, 53, 59, 101
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	313
GlaI	GCGC	2 cut(s)	121, 281
GluI	GCNGC	1 cut(s)	153
HapII	CCGG	2 cut(s)	129, 170
HhaI	GCGC	2 cut(s)	122, 282
Hin6I	GCGC	2 cut(s)	120, 280
HinP1I	GCGC	2 cut(s)	120, 280
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	4 cut(s)	71, 92, 203, 211
HpaII	CCGG	2 cut(s)	129, 170
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	4 cut(s)	177, 192, 235, 270
Hpy188III	TCNNGA	2 cut(s)	170, 301
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 225
HpyF3I	CTNAG	1 cut(s)	183
HspAI	GCGC	2 cut(s)	120, 280
Kpn2I	TCCGGA	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	287
LpnPI	CCDG	4 cut(s)	23, 62, 142, 183
LweI	GCATC	2 cut(s)	141, 147
MaeI	CTAG	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	304
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	2 cut(s)	229, 236
MnlI	CCTC	4 cut(s)	34, 198, 246, 264
MroI	TCCGGA	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	79
MspI	CCGG	2 cut(s)	129, 170
MvnI	CGCG	2 cut(s)	120, 282
MwoI	GCNNNNNNNGC	2 cut(s)	112, 225
NaeI	GCCGGC	1 cut(s)	130
NdeII	GATC	1 cut(s)	172
NgoMIV	GCCGGC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	287
PdiI	GCCGGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	71, 92, 203, 211
PkrI	GCNGC	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	5 cut(s)	26, 248, 257, 289, 299
SfaNI	GCATC	2 cut(s)	141, 147
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	229, 236
SsiI	CCGC	3 cut(s)	118, 150, 153
SspMI	CTAG	1 cut(s)	313
TaqI	TCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	229, 236
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	4 cut(s)	71, 92, 203, 211
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.