Rh5BG538200

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
85156971 .. 85168264
11294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG538200.1

Sequence Viewer

Length: 435 bp
ATGAAGCTGGAGGAGACTTTCATGATTGCTCTTTGGTATATTCAAGAACACCCATCACTTCGACCCACGATGAGGAAGGTTGTACAGATGCTTGAAGGATTAGTGGAAGCACATGTTCCACCATGCCCATCCCCATATAACATGTACGTAGTTGTTGTTTCTGAGATAATAAGGATTATGAAGTTTAATGAACCTAGTGTGTACGTAGTTGTTGTTTCTGAGATAATAAGGATTCATGCTTGGTGGATTATGAAAGCTTCTAGTTCGCCGAAATCTGATGTGAGATCGACCACCGGCATTGCAACTGAGGCAGTGTCCGGAGTTGGACGAGGTGACGTTGAACAAGAATTGGAGATCTCTTCCTCGAAGCCTTTCATGAATGAGTCTGTTGCCGGAACGGGATCAGAATCGTCGAGGAAGTCCAGCAAAGATTGA

Protein Analysis

144

Amino Acids

16.06

Weight (kDa)

5.94

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 317
AclWI GGATC 1 cut(s) 409
AfaI GTAC 3 cut(s) 84, 146, 203
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 2 cut(s) 112, 141
AgsI TTSAA 3 cut(s) 44, 95, 341
AluBI AGCT 2 cut(s) 7, 257
AluI AGCT 2 cut(s) 7, 257
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 1 cut(s) 409
Aor13HI TCCGGA 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 344
BccI CCATC 2 cut(s) 61, 136
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 2 cut(s) 195, 261
BglII AGATCT 1 cut(s) 354
BmsI GCATC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 29
BsaAI YACGTR 2 cut(s) 148, 205
BsaBI GATNNNNATC 1 cut(s) 406
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 317
BseGI GGATG 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 153, 210, 297
BseRI GAGGAG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 294, 318, 393
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 3 cut(s) 284, 354, 401
BspCNI CTCAG 3 cut(s) 154, 211, 298
BspEI TCCGGA 1 cut(s) 317
BspHI TCATGA 2 cut(s) 21, 375
BspPI GGATC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 293
BssMI GATC 3 cut(s) 284, 354, 401
Bst6I CTCTTC 1 cut(s) 364
BstAUI TGTACA 1 cut(s) 82
BstBAI YACGTR 2 cut(s) 148, 205
BstDEI CTNAG 3 cut(s) 162, 219, 306
BstF5I GGATG 1 cut(s) 128
BstKTI GATC 3 cut(s) 287, 357, 404
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 3 cut(s) 284, 354, 401
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNSI RCATGY 2 cut(s) 116, 145
BstSNI TACGTA 2 cut(s) 148, 205
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
CciI TCATGA 2 cut(s) 21, 375
Cfr10I RCCGGY 1 cut(s) 293
Csp6I GTAC 3 cut(s) 83, 145, 202
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 6 cut(s) 22, 113, 123, 142, 236, 376
CviJI RGCY 3 cut(s) 7, 257, 370
CviKI_1 RGCY 3 cut(s) 7, 257, 370
CviQI GTAC 3 cut(s) 83, 145, 202
DdeI CTNAG 3 cut(s) 162, 219, 306
DpnI GATC 3 cut(s) 286, 356, 403
DpnII GATC 3 cut(s) 284, 354, 401
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Eco105I TACGTA 2 cut(s) 148, 205
FaeI CATG 6 cut(s) 25, 116, 126, 145, 239, 379
FatI CATG 6 cut(s) 21, 112, 122, 141, 235, 375
FokI GGATG 1 cut(s) 115
FspBI CTAG 2 cut(s) 195, 261
GsuI CTGGAG 1 cut(s) 29
HapII CCGG 3 cut(s) 294, 318, 393
Hin1II CATG 6 cut(s) 25, 116, 126, 145, 239, 379
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 3 cut(s) 232, 383, 407
HpaII CCGG 3 cut(s) 294, 318, 393
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 4 cut(s) 163, 220, 277, 406
Hpy188III TCNNGA 4 cut(s) 22, 44, 318, 376
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 2 cut(s) 70, 89
HpyCH4IV ACGT 3 cut(s) 147, 204, 336
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 3 cut(s) 162, 219, 306
HpySE526I ACGT 3 cut(s) 147, 204, 336
Hsp92II CATG 6 cut(s) 25, 116, 126, 145, 239, 379
Kpn2I TCCGGA 1 cut(s) 317
Kzo9I GATC 3 cut(s) 284, 354, 401
LpnPI CCDG 3 cut(s) 307, 331, 406
LweI GCATC 1 cut(s) 78
MaeI CTAG 2 cut(s) 195, 261
MaeII ACGT 3 cut(s) 147, 204, 336
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 286, 356, 403
MboI GATC 3 cut(s) 284, 354, 401
MboII GAAGA 1 cut(s) 351
MflI RGATCY 1 cut(s) 354
MluCI AATT 1 cut(s) 347
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 6 cut(s) 4, 66, 301, 323, 373, 408
MroI TCCGGA 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 1 cut(s) 186
MspI CCGG 3 cut(s) 294, 318, 393
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 3 cut(s) 284, 354, 401
NlaIII CATG 6 cut(s) 25, 116, 126, 145, 239, 379
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 2 cut(s) 116, 145
PagI TCATGA 2 cut(s) 21, 375
PciI ACATGT 2 cut(s) 112, 141
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 2 cut(s) 232, 407
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Ppu21I YACGTR 2 cut(s) 148, 205
PscI ACATGT 2 cut(s) 112, 141
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 3 cut(s) 84, 146, 203
RsaNI GTAC 3 cut(s) 83, 145, 202
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 3 cut(s) 284, 354, 401
SchI GAGTC 1 cut(s) 392
SetI ASST 8 cut(s) 9, 81, 150, 196, 207, 259, 334, 339
SfaNI GCATC 1 cut(s) 78
SnaBI TACGTA 2 cut(s) 148, 205
Sse9I AATT 1 cut(s) 347
SspMI CTAG 2 cut(s) 195, 261
TaiI ACGT 3 cut(s) 150, 207, 339
TaqI TCGA 4 cut(s) 61, 287, 365, 413
TasI AATT 1 cut(s) 347
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 2 cut(s) 232, 407
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 8 cut(s) 10, 17, 194, 204, 224, 266, 364, 392
TspRI CASTG 1 cut(s) 318
XceI RCATGY 2 cut(s) 116, 145
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 2 cut(s) 195, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.