RchiOBHm_Chr5g0078511

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84383785 .. 84393117
9333 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35304

Sequence Viewer

Length: 549 bp
ATGGAAGTGGCTTTTACTGTATGGCTGCTTCTGATGCTTATTTCCTCATTCTTTCTGGCCCCAATTTCTGTCTTTTCCCAGACTGATTATAAAGTAGCAGTGGGTGATTCTCTCTCTGCAAATGGAGGTCATAACTTCTCATGGCTTTCTCCTTCTGGTAATTTTGCCTTTGGATTTCGCCAACTTGAAAACAGTGAGTATTTCTTGCTTTCTATATGGTTTGCCAAGATACCAGACAGAACCATAGTTTGGTATGCAAATGGAGATAGGCCTGCACCTAAGGGATCAATTGTGAACTTGACTTCCAGCAGTGGATTAGTGCTTACAACTCCTCAGGGTGAACAGCTATGGAAATCTGATCTAACCATTGCTGGCTTTGTTGCTCATGGGGTTATGAATGATAAAGGTAACTTTGTTCTGGAAGATGAGAAGTCAGAAAAGTTATGGGAGACATTCAAGAATCCTACTGATACCATGTTGCCTGGGCAAATATTAGAAAGAGGAGGGAGACTTTCTTCTCGACAATCAGAGACTAACTATGCGAGATGA

Protein Analysis

182

Amino Acids

20.27

Weight (kDa)

5.38

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 81 - 166 1.1e-14 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 249
AclWI GGATC 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 2 cut(s) 188, 457
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 232, 264
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 443, 502, 524
AlwI GGATC 1 cut(s) 292
AoxI GGCC 2 cut(s) 57, 269
ApeKI GCWGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 116, 350
AxyI CCTNAGG 2 cut(s) 279, 333
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbvI GCAGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 483
BcoDI GTCTC 3 cut(s) 443, 502, 524
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 482
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse21I CCTNAGG 2 cut(s) 279, 333
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 482
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 347
BseRI GAGGAG 2 cut(s) 321, 516
BseXI GCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 59, 271
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 3 cut(s) 443, 502, 524
BsnI GGCC 2 cut(s) 59, 271
Bsp143I GATC 2 cut(s) 284, 358
BspANI GGCC 2 cut(s) 59, 271
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 2 cut(s) 284, 358
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 19, 194
BstC8I GCNNGC 2 cut(s) 273, 373
BstDEI CTNAG 2 cut(s) 279, 333
BstKTI GATC 2 cut(s) 287, 361
BstMAI GTCTC 3 cut(s) 443, 502, 524
BstMBI GATC 2 cut(s) 284, 358
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 481
BstV1I GCAGC 1 cut(s) 12
Bsu36I CCTNAGG 2 cut(s) 279, 333
BsuRI GGCC 2 cut(s) 59, 271
BtsI GCAGTG 2 cut(s) 105, 316
BtsIMutI CAGTG 3 cut(s) 105, 199, 316
Cac8I GCNNGC 2 cut(s) 273, 373
Cfr13I GGNCC 1 cut(s) 58
CviAII CATG 3 cut(s) 141, 386, 475
CviJI RGCY 7 cut(s) 11, 25, 59, 145, 271, 346, 375
CviKI_1 RGCY 7 cut(s) 11, 25, 59, 145, 271, 346, 375
DdeI CTNAG 2 cut(s) 279, 333
DpnI GATC 2 cut(s) 286, 360
DpnII GATC 2 cut(s) 284, 358
Eco147I AGGCCT 1 cut(s) 271
Eco81I CCTNAGG 2 cut(s) 279, 333
EcoRII CCWGG 1 cut(s) 481
FaeI CATG 3 cut(s) 144, 389, 478
FatI CATG 3 cut(s) 140, 385, 474
Fnu4HI GCNGC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 59, 271
Hin1II CATG 3 cut(s) 144, 389, 478
HinfI GANTC 2 cut(s) 107, 460
HphI GGTGA 2 cut(s) 116, 350
Hpy166II GTNNAC 2 cut(s) 295, 341
Hpy188I TCNGA 4 cut(s) 33, 358, 436, 529
Hpy188III TCNNGA 3 cut(s) 419, 457, 519
Hpy8I GTNNAC 2 cut(s) 295, 341
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 2 cut(s) 19, 194
HpyCH4V TGCA 3 cut(s) 119, 257, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 279, 333
Hsp92II CATG 3 cut(s) 144, 389, 478
Kzo9I GATC 2 cut(s) 284, 358
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 407
MalI GATC 2 cut(s) 286, 360
MboI GATC 2 cut(s) 284, 358
MboII GAAGA 2 cut(s) 434, 507
MfeI CAATTG 1 cut(s) 288
MluCI AATT 3 cut(s) 63, 160, 288
MnlI CCTC 5 cut(s) 55, 119, 342, 494, 497
MspR9I CCNGG 1 cut(s) 483
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 2 cut(s) 284, 358
NlaIII CATG 3 cut(s) 144, 389, 478
NlaIV GGNNCC 1 cut(s) 60
PceI AGGCCT 1 cut(s) 271
PfeI GAWTC 2 cut(s) 107, 460
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 1 cut(s) 27
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 58
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 284, 358
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 483
SetI ASST 4 cut(s) 130, 280, 348, 409
SfaNI GCATC 1 cut(s) 24
Sse9I AATT 3 cut(s) 63, 160, 288
SseBI AGGCCT 1 cut(s) 271
SspI AATATT 1 cut(s) 492
StuI AGGCCT 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 481
TaaI ACNGT 2 cut(s) 19, 194
TaqI TCGA 1 cut(s) 520
TasI AATT 3 cut(s) 63, 160, 288
TfiI GAWTC 2 cut(s) 107, 460
TscAI CASTG 3 cut(s) 105, 199, 316
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 3 cut(s) 105, 199, 316
Van91I CCANNNNNTGG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.