Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002187.1

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

32174 .. 33457

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002187.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgagcaatggctctctagcaacgttcctcttcggagagtcaagaccaaactggaatacaagaaaaaaaattgccttaggaactgcaagagggcttttgtatttgcatgaggagtgcagcagccaaatcatacattgtgacattaagcctcaaaacattcttctcgacgattctttcacagcaagaatagccgactttggagtatccaagcttttgaaatctaaccaaactcaaacaactactagaatcagaggcacaaaaggttatgttgctcctgaatggttcaaaagtttgcctgtcacagtgaaggttgatgtttatagctacggcatggtgttgttggagattgtttgctgcaggaaaaactacgaaccagaagcaccagctgaagataaaatgatattagccgattgggcatacgattgctataagacctccgccgatataacggcggattctactcttcaggcaaaggcaaagccgccaccagaccagtcttctttggcgcgcggaagctcagactcgtggcctctgttttcctcctctgcgtcgtcgttttgtttcctccaggctcagctttctgatgattctatgataattggttttatagaggtgaatcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

207

Amino Acids

22.98

Weight (kDa)

6.13

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	508, 510
AciI	CCGC	4 cut(s)	438, 452, 482, 510
AclI	AACGTT	1 cut(s)	23
AcuI	CTGAAG	2 cut(s)	408, 449
AgsI	TTSAA	2 cut(s)	217, 286
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	5 cut(s)	211, 324, 386, 516, 577
AluI	AGCT	5 cut(s)	211, 324, 386, 516, 577
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	3 cut(s)	117, 120, 354
AspLEI	GCGC	2 cut(s)	508, 510
AxyI	CCTNAGG	1 cut(s)	76
BauI	CACGAG	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	129, 132, 341
BceAI	ACGGC	2 cut(s)	343, 465
BciT130I	CCWGG	1 cut(s)	569
BciVI	GTATCC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	17, 243
BfmI	CTRYAG	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	4 cut(s)	118, 121, 355, 482
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	4 cut(s)	119, 122, 356, 483
Bme1390I	CCNGG	1 cut(s)	569
BmrFI	CCNGG	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	573
Bse1I	ACTGG	2 cut(s)	56, 493
Bse21I	CCTNAGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	569
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	531, 587
BseNI	ACTGG	2 cut(s)	56, 493
BsePI	GCGCGC	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	125, 532
BseXI	GCAGC	3 cut(s)	129, 132, 341
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	508, 510
BshFI	GGCC	1 cut(s)	529
BsnI	GGCC	1 cut(s)	529
Bsp1720I	GCTNAGC	1 cut(s)	573
BspACI	CCGC	4 cut(s)	438, 452, 482, 510
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	2 cut(s)	530, 586
BspFNI	CGCG	2 cut(s)	508, 510
BspMAI	CTGCAG	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	56, 493
BssHII	GCGCGC	1 cut(s)	506
BssSI	CACGAG	1 cut(s)	523
Bst2BI	CACGAG	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	35, 468
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	76, 517, 573
BstFNI	CGCG	2 cut(s)	508, 510
BstHHI	GCGC	2 cut(s)	508, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 413
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	2 cut(s)	508, 510
BstV1I	GCAGC	3 cut(s)	129, 132, 341
BstV2I	GAAGAC	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	508
CfoI	GCGC	2 cut(s)	508, 510
CseI	GACGC	1 cut(s)	537
CviAII	CATG	2 cut(s)	107, 331
DdeI	CTNAG	3 cut(s)	76, 517, 573
Eam1104I	CTCTTC	2 cut(s)	35, 468
EarI	CTCTTC	2 cut(s)	35, 468
EciI	GGCGGA	2 cut(s)	427, 467
Eco57I	CTGAAG	2 cut(s)	408, 449
Eco81I	CCTNAGG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	110, 334
FatI	CATG	2 cut(s)	106, 330
Fnu4HI	GCNGC	4 cut(s)	118, 121, 355, 482
Fsp4HI	GCNGC	4 cut(s)	118, 121, 355, 482
FspBI	CTAG	2 cut(s)	17, 243
GlaI	GCGC	2 cut(s)	507, 509
GluI	GCNGC	4 cut(s)	118, 121, 355, 482
GsuI	CTGGAG	1 cut(s)	551
HaeIII	GGCC	1 cut(s)	529
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	2 cut(s)	508, 510
Hin1II	CATG	2 cut(s)	110, 334
Hin6I	GCGC	2 cut(s)	506, 508
HinP1I	GCGC	2 cut(s)	506, 508
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	7 cut(s)	38, 170, 246, 455, 521, 587, 616
Hpy188I	TCNGA	4 cut(s)	35, 251, 520, 583
Hpy188III	TCNNGA	3 cut(s)	42, 164, 275
Hpy99I	CGWCG	3 cut(s)	170, 553, 556
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	86, 106, 117, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 413
HpyF3I	CTNAG	3 cut(s)	76, 517, 573
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	110, 334
HspAI	GCGC	2 cut(s)	506, 508
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	3 cut(s)	129, 132, 341
MaeI	CTAG	2 cut(s)	17, 243
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	137, 298
MboII	GAAGA	5 cut(s)	22, 152, 401, 455, 489
MluCI	AATT	2 cut(s)	69, 597
MlyI	GAGTC	2 cut(s)	47, 515
MmeI	TCCRAC	1 cut(s)	321
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MvnI	CGCG	2 cut(s)	508, 510
MwoI	GCNNNNNNNGC	2 cut(s)	188, 413
NlaIII	CATG	2 cut(s)	110, 334
NmuCI	GTSAC	2 cut(s)	137, 298
PauI	GCGCGC	1 cut(s)	506
PfeI	GAWTC	5 cut(s)	170, 246, 455, 587, 616
PkrI	GCNGC	4 cut(s)	119, 122, 356, 483
PleI	GAGTC	2 cut(s)	46, 515
PpsI	GAGTC	2 cut(s)	46, 515
Psp1406I	AACGTT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PstI	CTGCAG	1 cut(s)	359
PteI	GCGCGC	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	4 cut(s)	118, 121, 355, 482
SchI	GAGTC	2 cut(s)	47, 515
ScrFI	CCNGG	1 cut(s)	569
SfcI	CTRYAG	1 cut(s)	355
Sse9I	AATT	2 cut(s)	69, 597
SsiI	CCGC	4 cut(s)	438, 452, 482, 510
SspMI	CTAG	2 cut(s)	17, 243
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	69, 597
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	5 cut(s)	170, 246, 455, 587, 616
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	137, 298
TseI	GCWGC	3 cut(s)	117, 120, 354
Tsp45I	GTSAC	2 cut(s)	137, 298
TspRI	CASTG	1 cut(s)	309
XspI	CTAG	2 cut(s)	17, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.