Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

84469322 .. 84471376

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35314

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATGCCAGGTAACTTTGTGCTGGAAAATGAGAAGTCAGAAAAGTTGTGGGAGACGTTCAAGAATCCTACTGATACCATGTTGCCTGGGCAAATAATGGAAATAGGAGGGAAGCTTTTCTCTCGACAATCCGAAACTAACTATGTGAGAGGACGCTTCCAGCTAACTTTGCAACAAGATGAGAATCCTGTGTTTAGCGCCAAAGAACCTTTTTATTCTACTGCAACTACCACAGGGACTATTCCAGAGGAGGAACGCCCAGCAAGGGACTACTATCTCCTATCTCCGGTCAACTCTCAACTTCGATGGGGTCACTCTCTGCCACTCATCAACTTTAGATTGTTGCAAGTCTCTGTCAATCTCTACTCCGGTATCTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

5.84

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	4 - 35	5.6e-06	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	265, 286
AgsI	TTSAA	2 cut(s)	61, 379
AjnI	CCWGG	2 cut(s)	7, 85
AluBI	AGCT	2 cut(s)	115, 163
AluI	AGCT	2 cut(s)	115, 163
Alw26I	GTCTC	2 cut(s)	47, 355
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	200
BaeI	ACNNNNGTAYC	1 cut(s)	355
BccI	CCATC	1 cut(s)	300
BciT130I	CCWGG	2 cut(s)	9, 87
BcoDI	GTCTC	2 cut(s)	47, 355
BfoI	RGCGCY	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	9, 87
BmrFI	CCNGG	2 cut(s)	9, 87
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	2 cut(s)	286, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 286
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	9, 87
BseDI	CCNNGG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	265, 286
BseRI	GAGGAG	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	287, 369
BslFI	GGGAC	2 cut(s)	250, 281
BslI	CCNNNNNNNGG	2 cut(s)	265, 286
BsmAI	GTCTC	2 cut(s)	47, 355
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	250, 281
BssECI	CCNNGG	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	9, 87
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstMAI	GTCTC	2 cut(s)	47, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	9, 87
BstSCI	CCNGG	2 cut(s)	7, 85
CfoI	GCGC	1 cut(s)	200
CseI	GACGC	1 cut(s)	162
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	2 cut(s)	115, 163
CviKI_1	RGCY	2 cut(s)	115, 163
EcoRII	CCWGG	2 cut(s)	7, 85
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	80, 144
FaqI	GGGAC	2 cut(s)	250, 281
FatI	CATG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	201
HapII	CCGG	2 cut(s)	287, 369
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	64, 184
HpaII	CCGG	2 cut(s)	287, 369
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	40, 133
Hpy188III	TCNNGA	4 cut(s)	61, 123, 245, 376
Hpy8I	GTNNAC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	172, 224, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	11, 311
MnlI	CCTC	4 cut(s)	101, 143, 241, 244
MroXI	GAANNNNTTC	1 cut(s)	116
MspI	CCGG	2 cut(s)	287, 369
MspR9I	CCNGG	2 cut(s)	9, 87
MvaI	CCWGG	2 cut(s)	9, 87
MwoI	GCNNNNNNNGC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	64, 184
Psp6I	CCWGG	2 cut(s)	7, 85
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	2 cut(s)	7, 85
ScrFI	CCNGG	2 cut(s)	9, 87
SetI	ASST	5 cut(s)	13, 59, 117, 165, 211
StyD4I	CCNGG	2 cut(s)	7, 85
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	124, 304
TfiI	GAWTC	2 cut(s)	64, 184
TseFI	GTSAC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.