RchiOBHm_Chr5g0078921

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84733425 .. 84734201
777 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35341

Sequence Viewer

Length: 777 bp
ATGGCAATGGCTTTTACTGTACGTTTGTTTCTACTTTCTTCATTGCTTCTGCTACCAACTTATGTGCTCGCACAAACTAATGGGAGCATAGCTGTGGGTGCTTCTCTCTCCACAGCAGGAAACTCCTCATGGCTTTCTGCCTTTGGGTTCCAGCAACATGAAAACAATAATCTTTTCTTGCTGTCTATATGGTTCGCCAAGATACCAGACAGAACCATAGTTTGGTATGCAAATGGGGATAAGCCTGCACGGTCTGCACCTAATGGTTTAGTTGTGACTTTGACTGCCAGCAGTGGGCTAGTTCTTACAAGTCGTCAGGGTGAGCAGTTATGGAAATCCAATCAAACCGTTGCTGGCGTTGTTGCTCATGGGGTTATGAATGATACAGGTAACTTTGTTCTGGAAGACAAAAAGTCAGCAAAGTTATGGGAGACGTTCAAGAATCCTACTGATACCATGTTGCCTGGGCAAATAATGGAAAGAGGAGGGAAAATTTCTTCTCGAAATTCAGAGACTGACTATTCGAGAAGATGCTTCCAGCTAGATTTTCATGATGATGGGAATCTTGTGTTTAGTGAGCAAAGACCTTTTTATTCAACCGCGATTACCACAGGAAGTGTTCCAGGTCATGACGGTCTACAGTTGGTTTTCAATGTCTCAGGTAACTTCTATATTCTGCGGGTGAATGGTGGACATTATCCTTTCACAGCAGAGGAACTTGCAGCAAGGGACTACTATCTCCAGTCAACTCTCAGCTTTGATGGCGTTTTGGCTTAA

Protein Analysis

258

Amino Acids

28.31

Weight (kDa)

6.2

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 160 8e-17 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AccI GTMKAC 1 cut(s) 637
AccII CGCG 1 cut(s) 602
AciI CCGC 2 cut(s) 600, 679
AcsI RAATTY 2 cut(s) 492, 505
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 222, 294
AgsI TTSAA 3 cut(s) 439, 597, 652
AhdI GACNNNNNGTC 1 cut(s) 412
AjnI CCWGG 2 cut(s) 463, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AluBI AGCT 3 cut(s) 92, 541, 756
AluI AGCT 3 cut(s) 92, 541, 756
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 3 cut(s) 425, 506, 661
AlwNI CAGNNNCTG 1 cut(s) 515
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 2 cut(s) 492, 505
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AsuHPI GGTGA 2 cut(s) 332, 694
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 734
BccI CCATC 2 cut(s) 551, 755
BciT130I CCWGG 2 cut(s) 465, 624
BcoDI GTCTC 3 cut(s) 425, 506, 661
BfaI CTAG 2 cut(s) 299, 542
BfmI CTRYAG 1 cut(s) 638
BisI GCNGC 1 cut(s) 723
BlsI GCNGC 1 cut(s) 724
Bme1390I CCNGG 2 cut(s) 465, 624
BmeRI GACNNNNNGTC 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 2 cut(s) 465, 624
BmsI GCATC 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 725
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 464
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 294
Bse1I ACTGG 1 cut(s) 742
Bse3DI GCAATG 2 cut(s) 12, 41
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 2 cut(s) 465, 624
BseDI CCNNGG 1 cut(s) 464
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 2 cut(s) 222, 294
BseMI GCAATG 2 cut(s) 12, 41
BseMII CTCAG 2 cut(s) 672, 766
BseNI ACTGG 1 cut(s) 742
BseRI GAGGAG 2 cut(s) 115, 498
BseXI GCAGC 1 cut(s) 734
BsgI GTGCAG 2 cut(s) 231, 240
Bsh1236I CGCG 1 cut(s) 602
BsiHKAI GWGCWC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 2 cut(s) 222, 294
BsmAI GTCTC 3 cut(s) 425, 506, 661
BsmBI CGTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 69
BspACI CCGC 2 cut(s) 600, 679
BspCNI CTCAG 2 cut(s) 671, 765
BspFNI CGCG 1 cut(s) 602
BspHI TCATGA 2 cut(s) 550, 628
BspLI GGNNCC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 12, 41
BsrI ACTGG 1 cut(s) 742
BssECI CCNNGG 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 465, 624
Bst4CI ACNGT 5 cut(s) 19, 252, 349, 635, 642
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 4 cut(s) 69, 246, 289, 355
BstDEI CTNAG 2 cut(s) 658, 752
BstFNI CGCG 1 cut(s) 602
BstMAI GTCTC 3 cut(s) 425, 506, 661
BstMWI GCNNNNNNNGC 3 cut(s) 98, 254, 762
BstNI CCWGG 2 cut(s) 465, 624
BstSCI CCNGG 2 cut(s) 463, 622
BstSFI CTRYAG 1 cut(s) 638
BstUI CGCG 1 cut(s) 602
BstV1I GCAGC 1 cut(s) 734
BstV2I GAAGAC 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 4 cut(s) 69, 246, 289, 355
CaiI CAGNNNCTG 1 cut(s) 515
CciI TCATGA 2 cut(s) 550, 628
Csp6I GTAC 1 cut(s) 20
CviAII CATG 6 cut(s) 129, 158, 368, 457, 551, 629
CviJI RGCY 8 cut(s) 11, 92, 133, 244, 298, 541, 756, 773
CviKI_1 RGCY 8 cut(s) 11, 92, 133, 244, 298, 541, 756, 773
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 658, 752
DriI GACNNNNNGTC 1 cut(s) 412
Eam1105I GACNNNNNGTC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 463, 622
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 6 cut(s) 132, 161, 371, 460, 554, 632
FaqI GGGAC 1 cut(s) 743
FatI CATG 6 cut(s) 128, 157, 367, 456, 550, 628
FauI CCCGC 1 cut(s) 672
FblI GTMKAC 1 cut(s) 637
Fnu4HI GCNGC 1 cut(s) 723
Fsp4HI GCNGC 1 cut(s) 723
FspBI CTAG 2 cut(s) 299, 542
GluI GCNGC 1 cut(s) 723
GsuI CTGGAG 1 cut(s) 725
Hin1II CATG 6 cut(s) 132, 161, 371, 460, 554, 632
HincII GTYRAC 1 cut(s) 747
HindII GTYRAC 1 cut(s) 747
HinfI GANTC 2 cut(s) 442, 562
HphI GGTGA 2 cut(s) 332, 694
Hpy166II GTNNAC 3 cut(s) 638, 692, 747
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 6 cut(s) 401, 439, 501, 525, 551, 629
Hpy8I GTNNAC 3 cut(s) 638, 692, 747
HpyCH4III ACNGT 5 cut(s) 19, 252, 349, 635, 642
HpyCH4IV ACGT 2 cut(s) 22, 434
HpyCH4V TGCA 4 cut(s) 230, 248, 257, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 254, 762
HpyF3I CTNAG 2 cut(s) 658, 752
HpySE526I ACGT 2 cut(s) 22, 434
Hsp92II CATG 6 cut(s) 132, 161, 371, 460, 554, 632
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 1 cut(s) 734
LweI GCATC 1 cut(s) 521
MaeI CTAG 2 cut(s) 299, 542
MaeII ACGT 2 cut(s) 22, 434
MaeIII GTNAC 3 cut(s) 274, 389, 662
MboII GAAGA 4 cut(s) 30, 416, 489, 540
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 2 cut(s) 492, 505
MnlI CCTC 4 cut(s) 136, 476, 479, 706
MseI TTAA 1 cut(s) 775
MslI CAYNNNNRTG 2 cut(s) 92, 555
MspR9I CCNGG 2 cut(s) 465, 624
MvaI CCWGG 2 cut(s) 465, 624
MvnI CGCG 1 cut(s) 602
MwoI GCNNNNNNNGC 3 cut(s) 98, 254, 762
NlaIII CATG 6 cut(s) 132, 161, 371, 460, 554, 632
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 274
PagI TCATGA 2 cut(s) 550, 628
PfeI GAWTC 2 cut(s) 442, 562
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 1 cut(s) 724
Psp6I CCWGG 2 cut(s) 463, 622
PspGI CCWGG 2 cut(s) 463, 622
PspN4I GGNNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 515
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 92, 555
SaqAI TTAA 1 cut(s) 775
SatI GCNGC 1 cut(s) 723
ScrFI CCNGG 2 cut(s) 465, 624
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 1 cut(s) 521
SfcI CTRYAG 1 cut(s) 638
SmiMI CAYNNNNRTG 2 cut(s) 92, 555
Sse9I AATT 2 cut(s) 492, 505
SsiI CCGC 2 cut(s) 600, 679
SspMI CTAG 2 cut(s) 299, 542
StyD4I CCNGG 2 cut(s) 463, 622
TaaI ACNGT 5 cut(s) 19, 252, 349, 635, 642
TaiI ACGT 2 cut(s) 25, 437
TaqI TCGA 2 cut(s) 502, 524
TasI AATT 2 cut(s) 492, 505
TfiI GAWTC 2 cut(s) 442, 562
Tru1I TTAA 1 cut(s) 775
Tru9I TTAA 1 cut(s) 775
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 4 cut(s) 30, 174, 392, 539
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 222
XapI RAATTY 2 cut(s) 492, 505
XmiI GTMKAC 1 cut(s) 637
XspI CTAG 2 cut(s) 299, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.