Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

2371881 .. 2372780

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1026700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGCTAAAACAAGCTACCGACGGATTCAAGGAGGAACTAGGTCGTGGTGCTTTTGCAACGGTTTACAAAGGAGTTCTAGCATCCGAGAATGGGAAATATGTTGCTGTCAAAAGATTGGACAGTATGGTCAGAGAAAATGATTTCGAATTTAAAGCTGAAGTGAGCGCAATCGGGAGAACAAATCACAGAAATTTAGTCCAGCTACTAGGTTTCTGCAACGAAGGGCAGCACCGAATTCTTGTGTACGAGTTTATGACCAATGGCTCTCTTGCAAGCTTCCTCTTTGGAGAGTCAAGGCCCAGCTGGTATCAGAGAAAGGAAATTTCCTTGGGAACCGCGAGAGGACTCTTGTACTTGCATGAGGAATGCAGCAGCCAAATCATACATTGTGATATTAAGCCTCAAAACATTCTACTAGATGAGTCTTTCACAGCAAGAATTGCCGACTTTGGGGTAGCCAAGCTTTTGAAGACGGACCAAACTCGAACAACTACTAGGTTCAGAGGAACAAAAGGGTATGTGGCCCCTGAATGGTTCAAAAGCTTGCCTGTCACAGCAAAGGCGGATGTTTACAGCTTTGGAGTTATGCTATTAGAGATTGTTTGCTGCAGGAAGCATTATGAACCAAAGATGGAGGATGAAGATCAAATGGTACTAGCTGATTGGGCGTATCGTTGCTATAAGCAAAATACACTGCGCCTGTTGTTAGAGAATGATAATGATGAGTCAATGGATGACCTCGAGATGATGGAGAGGTATGTGATGATTGCATTTTGGTGCATTCATGAAGATCAATCACTAAGACCAACCATGAAGAATGTCACACAGATGCTTGAAGGAACTCTTGAAGTCCCAATCCCACCAAATATCTCTTCATTATATGTTCAATCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

300

Amino Acids

34.38

Weight (kDa)

5.52

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	10 - 279	2.2e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	11 - 277	2e-51	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	341
AciI	CCGC	2 cut(s)	339, 566
AcsI	RAATTY	4 cut(s)	149, 193, 237, 324
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	3 cut(s)	248, 356, 657
AfiI	CCNNNNNNNGG	3 cut(s)	93, 453, 534
AgsI	TTSAA	6 cut(s)	31, 472, 541, 839, 851, 890
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	2 cut(s)	299, 525
ApeKI	GCWGC	4 cut(s)	229, 372, 375, 609
ApoI	RAATTY	4 cut(s)	149, 193, 237, 324
AspLEI	GCGC	2 cut(s)	170, 702
AspS9I	GGNCC	3 cut(s)	300, 478, 526
AsuII	TTCGAA	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	4 cut(s)	241, 384, 387, 596
BccI	CCATC	2 cut(s)	628, 745
BfaI	CTAG	6 cut(s)	41, 80, 209, 419, 498, 659
BfmI	CTRYAG	1 cut(s)	610
BisI	GCNGC	4 cut(s)	230, 373, 376, 610
BlsI	GCNGC	4 cut(s)	231, 374, 377, 611
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	3 cut(s)	300, 478, 526
BmiI	GGNNCC	2 cut(s)	337, 528
BmsI	GCATC	2 cut(s)	92, 822
BpiI	GAAGAC	1 cut(s)	479
Bpu14I	TTCGAA	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 453, 534
Bse8I	GATNNNNATC	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	4 cut(s)	83, 574, 646, 742
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	93, 453, 534
BseXI	GCAGC	4 cut(s)	241, 384, 387, 596
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	301, 527
BsiHKCI	CYCGRG	1 cut(s)	743
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	3 cut(s)	93, 453, 534
BsmFI	GGGAC	1 cut(s)	839
BsmI	GAATGC	2 cut(s)	374, 783
BsnI	GGCC	2 cut(s)	301, 527
BsoBI	CYCGRG	1 cut(s)	743
Bsp119I	TTCGAA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	646, 793
BspACI	CCGC	2 cut(s)	339, 566
BspANI	GGCC	2 cut(s)	301, 527
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	2 cut(s)	337, 528
BspMAI	CTGCAG	1 cut(s)	614
BspT104I	TTCGAA	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	2 cut(s)	646, 793
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	64, 125
Bst6I	CTCTTC	1 cut(s)	880
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	277, 548
BstDEI	CTNAG	1 cut(s)	803
BstF5I	GGATG	4 cut(s)	83, 574, 646, 742
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	2 cut(s)	170, 702
BstKTI	GATC	2 cut(s)	649, 796
BstMBI	GATC	2 cut(s)	646, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 668
BstSFI	CTRYAG	1 cut(s)	610
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	4 cut(s)	241, 384, 387, 596
BstV2I	GAAGAC	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	301, 527
BtsCI	GGATG	4 cut(s)	83, 574, 646, 742
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	1 cut(s)	695
Cac8I	GCNNGC	2 cut(s)	277, 548
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	2 cut(s)	170, 702
Cfr13I	GGNCC	3 cut(s)	300, 478, 526
Csp6I	GTAC	3 cut(s)	247, 355, 656
CviAII	CATG	3 cut(s)	362, 788, 814
CviQI	GTAC	3 cut(s)	247, 355, 656
DdeI	CTNAG	1 cut(s)	803
DpnI	GATC	2 cut(s)	648, 795
DpnII	GATC	2 cut(s)	646, 793
DraI	TTTAAA	1 cut(s)	154
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
EciI	GGCGGA	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	365, 791, 817
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	3 cut(s)	361, 787, 813
Fnu4HI	GCNGC	4 cut(s)	230, 373, 376, 610
FokI	GGATG	4 cut(s)	70, 581, 653, 749
Fsp4HI	GCNGC	4 cut(s)	230, 373, 376, 610
FspBI	CTAG	6 cut(s)	41, 80, 209, 419, 498, 659
GlaI	GCGC	2 cut(s)	169, 701
GluI	GCNGC	4 cut(s)	230, 373, 376, 610
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	301, 527
HhaI	GCGC	2 cut(s)	170, 702
Hin1II	CATG	3 cut(s)	365, 791, 817
Hin6I	GCGC	2 cut(s)	168, 700
HinP1I	GCGC	2 cut(s)	168, 700
HindIII	AAGCTT	3 cut(s)	277, 464, 544
HinfI	GANTC	5 cut(s)	27, 293, 348, 425, 728
Hpy166II	GTNNAC	3 cut(s)	67, 247, 574
Hpy188I	TCNGA	4 cut(s)	88, 134, 315, 506
Hpy188III	TCNNGA	4 cut(s)	175, 745, 788, 848
Hpy8I	GTNNAC	3 cut(s)	67, 247, 574
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	218, 833
HpyCH4III	ACNGT	2 cut(s)	64, 125
HpyCH4V	TGCA	8 cut(s)	59, 219, 275, 361, 372, 612, 773, 783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 668
HpyF3I	CTNAG	1 cut(s)	803
Hsp92II	CATG	3 cut(s)	365, 791, 817
HspAI	GCGC	2 cut(s)	168, 700
Kzo9I	GATC	2 cut(s)	646, 793
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	215, 292, 316, 543, 564, 598, 716
Lsp1109I	GCAGC	4 cut(s)	241, 384, 387, 596
LweI	GCATC	2 cut(s)	92, 822
MaeI	CTAG	6 cut(s)	41, 80, 209, 419, 498, 659
MaeIII	GTNAC	2 cut(s)	553, 823
MalI	GATC	2 cut(s)	648, 795
MboI	GATC	2 cut(s)	646, 793
MboII	GAAGA	5 cut(s)	484, 656, 803, 829, 867
MluCI	AATT	5 cut(s)	149, 193, 237, 324, 441
MlyI	GAGTC	4 cut(s)	302, 342, 434, 737
MnlI	CCTC	9 cut(s)	28, 293, 338, 358, 414, 500, 631, 750, 752
MseI	TTAA	2 cut(s)	153, 399
MslI	CAYNNNNRTG	2 cut(s)	778, 830
MspA1I	CMGCKG	1 cut(s)	306
Mva1269I	GAATGC	2 cut(s)	374, 783
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	443, 668
NdeII	GATC	2 cut(s)	646, 793
NlaIII	CATG	3 cut(s)	365, 791, 817
NlaIV	GGNNCC	2 cut(s)	337, 528
NmuCI	GTSAC	2 cut(s)	553, 823
NspV	TTCGAA	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	743
PagI	TCATGA	1 cut(s)	787
PctI	GAATGC	2 cut(s)	374, 783
PfeI	GAWTC	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	231, 374, 377, 611
PleI	GAGTC	4 cut(s)	301, 342, 433, 736
PpsI	GAGTC	4 cut(s)	301, 342, 433, 736
PspFI	CCCAGC	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	337, 528
PspPI	GGNCC	3 cut(s)	300, 478, 526
PstI	CTGCAG	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	3 cut(s)	248, 356, 657
RsaNI	GTAC	3 cut(s)	247, 355, 656
RseI	CAYNNNNRTG	2 cut(s)	778, 830
SaqAI	TTAA	2 cut(s)	153, 399
SatI	GCNGC	4 cut(s)	230, 373, 376, 610
Sau3AI	GATC	2 cut(s)	646, 793
Sau96I	GGNCC	3 cut(s)	300, 478, 526
SchI	GAGTC	4 cut(s)	302, 342, 434, 737
SfaNI	GCATC	2 cut(s)	92, 822
SfcI	CTRYAG	1 cut(s)	610
Sfr274I	CTCGAG	1 cut(s)	743
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	778, 830
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
Sse9I	AATT	5 cut(s)	149, 193, 237, 324, 441
SsiI	CCGC	2 cut(s)	339, 566
SspMI	CTAG	6 cut(s)	41, 80, 209, 419, 498, 659
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	64, 125
TaqI	TCGA	3 cut(s)	147, 487, 744
TasI	AATT	5 cut(s)	149, 193, 237, 324, 441
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	153, 399
Tru9I	TTAA	2 cut(s)	153, 399
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	2 cut(s)	553, 823
TseI	GCWGC	4 cut(s)	229, 372, 375, 609
Tsp45I	GTSAC	2 cut(s)	553, 823
TspDTI	ATGAA	6 cut(s)	639, 657, 776, 804, 830, 867
TspGWI	ACGGA	2 cut(s)	39, 491
TspRI	CASTG	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	4 cut(s)	149, 193, 237, 324
XhoI	CTCGAG	1 cut(s)	743
XspI	CTAG	6 cut(s)	41, 80, 209, 419, 498, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.