RchiOBHm_Chr5g0078491

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84365321 .. 84366037
717 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35302

Sequence Viewer

Length: 717 bp
ATGCCAGGTTCAGATAATAAGAAGAAGATCCGGACCACTTCGGTGCCTGTGGAATCAATTCTTCTGTTTAAGACCATCTCTCTTAATTTTATGTTTGGTGCTGCAGTTTGTTTCAGATTTTTCTTCCGTTTCCGGAAGAAACCTGCAAAGTTTACACACAGTGATTTGGAAACAAATTTGCGTTCGTTTAGTCACAAAGAGCTTGAAGAAGCTACAAATGGATTCAATGAAGTATTAGGAGAGGGTTCTTTTGGAGTTGTTTACAAAGGGATAATACAAGTTGGATCAGGTGTCGAGGTGGCAGTCAAGAAGCTCAAACGTGTGATAGAAGATGGTGAGAAGGAATTCAAGACGGAACTTAACATAATTGGCAAGACACATCACAAGAATCTGGTTCACCTGGTTGGATATTGTGATGAGGGACAGCAGCGATTACTAGTGTATGAATTCTTGAGCAATGGCACGTTAGCAAGCTTCATTTTTGGTGATGAGAAACCCAGTTGGAGGCAACGAATGGAAATTGCCTATGGTGTTGCTAGAGGGCTTCTGTACTTGCATGAAGAGTGCACCACCCAAATCATCCATTGTGATATAAAGCCTCAGAACACACTTCTGGATGATCATTGCAATGCCCGGGTCTCTGATTTTGGCTTGGCAAAACTTATGATGACGAATCAGAGCAAGACGCACACTACCATTAAAGGGACAAAAGGGTAA

Protein Analysis

238

Amino Acids

26.91

Weight (kDa)

9.01

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 75 - 230 2.4e-32 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 76 - 236 6.6e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 43
AccIII TCCGGA 2 cut(s) 30, 132
AclWI GGATC 2 cut(s) 22, 292
AcsI RAATTY 3 cut(s) 175, 344, 446
AdeI CACNNNGTG 1 cut(s) 161
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 2 cut(s) 504, 702
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 206, 226, 349
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 2 cut(s) 4, 399
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 4 cut(s) 202, 212, 313, 474
AluI AGCT 4 cut(s) 202, 212, 313, 474
Alw21I GWGCWC 1 cut(s) 569
Alw26I GTCTC 1 cut(s) 643
Alw44I GTGCAC 1 cut(s) 565
AlwI GGATC 2 cut(s) 22, 292
Ama87I CYCGRG 1 cut(s) 633
Aor13HI TCCGGA 2 cut(s) 30, 132
ApaLI GTGCAC 1 cut(s) 565
ApeKI GCWGC 2 cut(s) 101, 427
ApoI RAATTY 3 cut(s) 175, 344, 446
Asp700I GAANNNNTTC 2 cut(s) 57, 344
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 2 cut(s) 634, 635
AsuHPI GGTGA 3 cut(s) 347, 389, 497
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 569
BanI GGYRCC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 2 cut(s) 88, 439
BccI CCATC 2 cut(s) 83, 326
BciT130I CCWGG 2 cut(s) 6, 401
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 2 cut(s) 634, 635
BcoDI GTCTC 1 cut(s) 643
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 2 cut(s) 437, 537
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 2 cut(s) 102, 428
BlsI GCNGC 2 cut(s) 103, 429
Bme1390I CCNGG 4 cut(s) 6, 401, 634, 635
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 633
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 4 cut(s) 6, 401, 634, 635
BmrI ACTGGG 1 cut(s) 492
BmuI ACTGGG 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 472
BpuMI CCSGG 2 cut(s) 634, 635
BsaI GGTCTC 1 cut(s) 643
BsaJI CCNNGG 1 cut(s) 633
BsaWI WCCGGW 2 cut(s) 30, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 702
Bse1I ACTGG 1 cut(s) 498
Bse3DI GCAATG 3 cut(s) 463, 622, 634
BseAI TCCGGA 2 cut(s) 30, 132
BseBI CCWGG 2 cut(s) 6, 401
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 2 cut(s) 579, 622
BseLI CCNNNNNNNGG 2 cut(s) 504, 702
BseMI GCAATG 3 cut(s) 463, 622, 634
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 569
BseXI GCAGC 2 cut(s) 88, 439
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 569
BsiHKCI CYCGRG 1 cut(s) 633
BsiSI CCGG 3 cut(s) 31, 133, 634
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 504, 702
BsmAI GTCTC 1 cut(s) 643
BsmFI GGGAC 1 cut(s) 435
Bso31I GGTCTC 1 cut(s) 643
BsoBI CYCGRG 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 569
Bsp13I TCCGGA 2 cut(s) 30, 132
Bsp143I GATC 3 cut(s) 27, 284, 619
BspCNI CTCAG 1 cut(s) 613
BspEI TCCGGA 2 cut(s) 30, 132
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 22, 292
BspT107I GGYRCC 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 643
BsrDI GCAATG 3 cut(s) 463, 622, 634
BsrI ACTGG 1 cut(s) 498
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 3 cut(s) 27, 284, 619
Bst2UI CCWGG 2 cut(s) 6, 401
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 1 cut(s) 600
BstF5I GGATG 2 cut(s) 579, 622
BstKTI GATC 3 cut(s) 30, 287, 622
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 3 cut(s) 27, 284, 619
BstNI CCWGG 2 cut(s) 6, 401
BstSCI CCNGG 4 cut(s) 4, 399, 632, 633
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 569
BstV1I GCAGC 2 cut(s) 88, 439
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BtsCI GGATG 2 cut(s) 579, 622
BtsIMutI CAGTG 1 cut(s) 166
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 33
Cfr9I CCCGGG 1 cut(s) 633
CseI GACGC 1 cut(s) 694
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 550
CviAII CATG 1 cut(s) 557
CviJI RGCY 7 cut(s) 202, 212, 313, 474, 544, 598, 651
CviKI_1 RGCY 7 cut(s) 202, 212, 313, 474, 544, 598, 651
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 1 cut(s) 600
DpnI GATC 3 cut(s) 29, 286, 621
DpnII GATC 3 cut(s) 27, 284, 619
DraIII CACNNNGTG 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 633
EcoRI GAATTC 2 cut(s) 344, 446
EcoRII CCWGG 2 cut(s) 4, 399
FaeI CATG 1 cut(s) 560
FaiI YATR 7 cut(s) 92, 365, 444, 528, 558, 593, 665
FaqI GGGAC 1 cut(s) 435
FatI CATG 1 cut(s) 556
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 2 cut(s) 102, 428
FokI GGATG 2 cut(s) 566, 629
Fsp4HI GCNGC 2 cut(s) 102, 428
FspBI CTAG 2 cut(s) 437, 537
GluI GCNGC 2 cut(s) 102, 428
HapII CCGG 3 cut(s) 31, 133, 634
HgaI GACGC 1 cut(s) 694
Hin1II CATG 1 cut(s) 560
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 4 cut(s) 53, 222, 388, 673
HpaII CCGG 3 cut(s) 31, 133, 634
HphI GGTGA 3 cut(s) 347, 389, 497
Hpy166II GTNNAC 4 cut(s) 153, 262, 397, 567
Hpy188I TCNGA 5 cut(s) 13, 116, 603, 643, 678
Hpy188III TCNNGA 6 cut(s) 31, 133, 307, 349, 451, 614
Hpy8I GTNNAC 4 cut(s) 153, 262, 397, 567
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 319, 464
HpyCH4V TGCA 5 cut(s) 104, 146, 556, 567, 627
HpyF3I CTNAG 1 cut(s) 600
HpySE526I ACGT 2 cut(s) 319, 464
Hsp92II CATG 1 cut(s) 560
Kpn2I TCCGGA 2 cut(s) 30, 132
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 3 cut(s) 27, 284, 619
Lsp1109I GCAGC 2 cut(s) 88, 439
MabI ACCWGGT 1 cut(s) 399
MaeI CTAG 2 cut(s) 437, 537
MaeII ACGT 2 cut(s) 319, 464
MaeIII GTNAC 1 cut(s) 191
MalI GATC 3 cut(s) 29, 286, 621
MboI GATC 3 cut(s) 27, 284, 619
MboII GAAGA 8 cut(s) 34, 37, 53, 115, 148, 218, 341, 572
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 569
MluCI AATT 7 cut(s) 57, 85, 175, 344, 366, 446, 519
MmeI TCCRAC 3 cut(s) 262, 385, 482
MnlI CCTC 6 cut(s) 235, 289, 412, 498, 533, 609
MroI TCCGGA 2 cut(s) 30, 132
MroXI GAANNNNTTC 2 cut(s) 57, 344
MseI TTAA 4 cut(s) 69, 84, 360, 699
MslI CAYNNNNRTG 2 cut(s) 41, 627
MspI CCGG 3 cut(s) 31, 133, 634
MspR9I CCNGG 4 cut(s) 6, 401, 634, 635
MvaI CCWGG 2 cut(s) 6, 401
NciI CCSGG 2 cut(s) 634, 635
NdeII GATC 3 cut(s) 27, 284, 619
NlaIII CATG 1 cut(s) 560
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 191
OliI CACNNNNGTG 1 cut(s) 41
PdmI GAANNNNTTC 2 cut(s) 57, 344
PfeI GAWTC 4 cut(s) 53, 222, 388, 673
PkrI GCNGC 2 cut(s) 103, 429
Psp6I CCWGG 2 cut(s) 4, 399
PspGI CCWGG 2 cut(s) 4, 399
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 2 cut(s) 41, 627
SaqAI TTAA 4 cut(s) 69, 84, 360, 699
SatI GCNGC 2 cut(s) 102, 428
Sau3AI GATC 3 cut(s) 27, 284, 619
Sau96I GGNCC 1 cut(s) 33
ScrFI CCNGG 4 cut(s) 6, 401, 634, 635
SduI GDGCHC 1 cut(s) 569
SexAI ACCWGGT 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 33
SmaI CCCGGG 1 cut(s) 635
SmiMI CAYNNNNRTG 2 cut(s) 41, 627
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 7 cut(s) 57, 85, 175, 344, 366, 446, 519
SspMI CTAG 2 cut(s) 437, 537
StyD4I CCNGG 4 cut(s) 4, 399, 632, 633
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 322, 467
TaqI TCGA 1 cut(s) 294
TasI AATT 7 cut(s) 57, 85, 175, 344, 366, 446, 519
TatI WGTACW 1 cut(s) 549
TfiI GAWTC 4 cut(s) 53, 222, 388, 673
Tru1I TTAA 4 cut(s) 69, 84, 360, 699
Tru9I TTAA 4 cut(s) 69, 84, 360, 699
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 101, 427
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 4 cut(s) 243, 459, 466, 573
TspGWI ACGGA 2 cut(s) 116, 368
TspMI CCCGGG 1 cut(s) 633
TspRI CASTG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 3 cut(s) 175, 344, 446
XmaI CCCGGG 1 cut(s) 633
XmnI GAANNNNTTC 2 cut(s) 57, 344
XspI CTAG 2 cut(s) 437, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.